RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 SPOCK1Q08629 439 aa13.56□□□□□ -0.24
CCDC88A-201ENST00000263630 PIGGQ5H8A4 983 aa13.56□□□□□ -0.24
CCDC88A-201ENST00000263630 AMZ2Q86W34 360 aa13.56□□□□□ -0.24
CCDC88A-201ENST00000263630 CCDC71Q8IV32 467 aaPredicted RBP13.56□□□□□ -0.24
CCDC88A-201ENST00000263630 NLGN2Q8NFZ4 835 aa13.56□□□□□ -0.24
CCDC88A-201ENST00000263630 HERVK_113Q902F9 699 aa13.56□□□□□ -0.24
CCDC88A-201ENST00000263630 LGMNQ99538 433 aa13.56□□□□□ -0.24
CCDC88A-201ENST00000263630 ZBTB26Q9HCK0 441 aa13.56□□□□□ -0.24
CCDC88A-201ENST00000263630 ABRACLQ9P1F3 81 aa13.56□□□□□ -0.24
CCDC88A-201ENST00000263630 CPA4Q9UI42 421 aa13.56□□□□□ -0.24
CCDC88A-201ENST00000263630 DERAQ9Y315 318 aa13.56□□□□□ -0.24
CCDC88A-201ENST00000263630 ANGPTL7O43827 346 aa13.55□□□□□ -0.24
CCDC88A-201ENST00000263630 PSMD10O75832 226 aa13.55□□□□□ -0.24
CCDC88A-201ENST00000263630 C2P06681 752 aa13.55□□□□□ -0.24
CCDC88A-201ENST00000263630 ZBTB48P10074 688 aaPredicted RBP13.55□□□□□ -0.24
CCDC88A-201ENST00000263630 PTGER3P43115 390 aa13.55□□□□□ -0.24
CCDC88A-201ENST00000263630 AQP4P55087 323 aa13.55□□□□□ -0.24
CCDC88A-201ENST00000263630 PRAMEF18Q5VWM3 479 aa13.55□□□□□ -0.24
CCDC88A-201ENST00000263630 PLEKHG7Q6ZR37 379 aa13.55□□□□□ -0.24
CCDC88A-201ENST00000263630 SLC15A3Q8IY34 581 aa13.55□□□□□ -0.24
CCDC88A-201ENST00000263630 TRAPPC12Q8WVT3 735 aa13.55□□□□□ -0.24
CCDC88A-201ENST00000263630 TMEM203Q969S6 136 aa13.55□□□□□ -0.24
CCDC88A-201ENST00000263630 TMEM209Q96SK2 561 aa13.55□□□□□ -0.24
CCDC88A-201ENST00000263630 GPR21Q99679 349 aa13.55□□□□□ -0.24
CCDC88A-201ENST00000263630 TSTQ16762 297 aaKnown RBP13.55□□□□□ -0.24
CCDC88A-201ENST00000263630 TBRG1Q3YBR2 411 aa13.55□□□□□ -0.24
CCDC88A-201ENST00000263630 RAB41Q5JT25 222 aa13.55□□□□□ -0.24
CCDC88A-201ENST00000263630 TMEM214Q6NUQ4 689 aaKnown RBP13.55□□□□□ -0.24
CCDC88A-201ENST00000263630 RDH10Q8IZV5 341 aa13.55□□□□□ -0.24
CCDC88A-201ENST00000263630 TRIB2Q92519 343 aa13.55□□□□□ -0.24
CCDC88A-201ENST00000263630 Q9N2J8 555 aa13.55□□□□□ -0.24
CCDC88A-201ENST00000263630 LRRC42Q9Y546 428 aa13.55□□□□□ -0.24
CCDC88A-201ENST00000263630 GXYLT2A0PJZ3 443 aa13.55□□□□□ -0.24
CCDC88A-201ENST00000263630 OR5H15A6NDH6 313 aa13.55□□□□□ -0.24
CCDC88A-201ENST00000263630 OR5H14A6NHG9 310 aa13.55□□□□□ -0.24
CCDC88A-201ENST00000263630 OR5H1A6NKK0 313 aa13.55□□□□□ -0.24
CCDC88A-201ENST00000263630 NPIPA2E9PIF3 369 aa13.55□□□□□ -0.24
CCDC88A-201ENST00000263630 NPIPA3F8WFD2 350 aa13.55□□□□□ -0.24
CCDC88A-201ENST00000263630 CASC3O15234 703 aaKnown RBP13.55□□□□□ -0.24
CCDC88A-201ENST00000263630 GBE1Q04446 702 aa13.55□□□□□ -0.24
CCDC88A-201ENST00000263630 SERINC3Q13530 473 aa13.55□□□□□ -0.24
CCDC88A-201ENST00000263630 CDNFQ49AH0 187 aa13.55□□□□□ -0.24
CCDC88A-201ENST00000263630 TNFAIP8L2Q6P589 184 aaPredicted RBP13.55□□□□□ -0.24
CCDC88A-201ENST00000263630 SCRN2Q96FV2 425 aa13.55□□□□□ -0.24
CCDC88A-201ENST00000263630 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP13.55□□□□□ -0.24
CCDC88A-201ENST00000263630 MGAT4CQ9UBM8 478 aa13.55□□□□□ -0.24
CCDC88A-201ENST00000263630 PCDH7O60245 1069 aa13.55□□□□□ -0.24
CCDC88A-201ENST00000263630 APOC3P02656 99 aa13.55□□□□□ -0.24
CCDC88A-201ENST00000263630 RHOP08100 348 aa13.55□□□□□ -0.24
CCDC88A-201ENST00000263630 MYCLP1P12525 358 aaPredicted RBP13.55□□□□□ -0.24
CCDC88A-201ENST00000263630 PEX2P28328 305 aa13.55□□□□□ -0.24
CCDC88A-201ENST00000263630 THBS3P49746 956 aa13.55□□□□□ -0.24
CCDC88A-201ENST00000263630 CAPSQ13938 189 aa13.55□□□□□ -0.24
CCDC88A-201ENST00000263630 TARBP2Q15633 366 aaKnown RBP13.55□□□□□ -0.24
CCDC88A-201ENST00000263630 EPS8L1Q8TE68 723 aa13.55□□□□□ -0.24
CCDC88A-201ENST00000263630 D6RAR5 112 aa13.55□□□□□ -0.24
CCDC88A-201ENST00000263630 CXCL14O95715 111 aa13.55□□□□□ -0.24
CCDC88A-201ENST00000263630 HOXA9P31269 272 aa13.55□□□□□ -0.24
CCDC88A-201ENST00000263630 KCNC1P48547 511 aa13.55□□□□□ -0.24
CCDC88A-201ENST00000263630 TAS2R39P59534 338 aa13.55□□□□□ -0.24
CCDC88A-201ENST00000263630 ACTC1P68032 377 aa13.55□□□□□ -0.24
CCDC88A-201ENST00000263630 ACTA1P68133 377 aa13.55□□□□□ -0.24
CCDC88A-201ENST00000263630 ZNF662Q6ZS27 426 aa13.55□□□□□ -0.24
CCDC88A-201ENST00000263630 AURKBQ96GD4 344 aaPredicted RBP13.55□□□□□ -0.24
CCDC88A-201ENST00000263630 DHDHQ9UQ10 334 aa13.55□□□□□ -0.24
CCDC88A-201ENST00000263630 MYH13Q9UKX3 1938 aa13.55□□□□□ -0.24
CCDC88A-201ENST00000263630 LCKP06239 509 aa13.55□□□□□ -0.24
CCDC88A-201ENST00000263630 GABRR2P28476 465 aa13.55□□□□□ -0.24
CCDC88A-201ENST00000263630 OXTRP30559 389 aa13.55□□□□□ -0.24
CCDC88A-201ENST00000263630 ACTA2P62736 377 aa13.55□□□□□ -0.24
CCDC88A-201ENST00000263630 ACTG2P63267 376 aa13.55□□□□□ -0.24
CCDC88A-201ENST00000263630 RAB35Q15286 201 aa13.55□□□□□ -0.24
CCDC88A-201ENST00000263630 KLHDC10Q6PID8 442 aa13.55□□□□□ -0.24
CCDC88A-201ENST00000263630 CREB3L2Q70SY1 520 aa13.55□□□□□ -0.24
CCDC88A-201ENST00000263630 OTOP1Q7RTM1 612 aa13.55□□□□□ -0.24
CCDC88A-201ENST00000263630 TOP6BLQ8N6T0 577 aa13.55□□□□□ -0.24
CCDC88A-201ENST00000263630 PROKR1Q8TCW9 393 aa13.55□□□□□ -0.24
CCDC88A-201ENST00000263630 WDR77Q9BQA1 342 aaPredicted RBP13.55□□□□□ -0.24
CCDC88A-201ENST00000263630 TIMM22Q9Y584 194 aa13.55□□□□□ -0.24
CCDC88A-201ENST00000263630 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.55□□□□□ -0.24
CCDC88A-201ENST00000263630 PLA2G16P53816 162 aa13.55□□□□□ -0.24
CCDC88A-201ENST00000263630 NMUR2Q9GZQ4 415 aa13.55□□□□□ -0.24
CCDC88A-201ENST00000263630 KCNQ5Q9NR82 932 aa13.55□□□□□ -0.24
CCDC88A-201ENST00000263630 ACSL5Q9ULC5 683 aa13.55□□□□□ -0.24
CCDC88A-201ENST00000263630 A0A1W2PRB8 838 aa13.54□□□□□ -0.24
CCDC88A-201ENST00000263630 FAM199XQ6PEV8 388 aaPredicted RBP13.54□□□□□ -0.24
CCDC88A-201ENST00000263630 UGT2A3Q6UWM9 527 aa13.54□□□□□ -0.24
CCDC88A-201ENST00000263630 RNF128Q8TEB7 428 aa13.54□□□□□ -0.24
CCDC88A-201ENST00000263630 TMEM234Q8WY98 164 aa13.54□□□□□ -0.24
CCDC88A-201ENST00000263630 ZNF286AQ9HBT8 521 aa13.54□□□□□ -0.24
CCDC88A-201ENST00000263630 TMEM9Q9P0T7 183 aa13.54□□□□□ -0.24
CCDC88A-201ENST00000263630 CSNK2A2P19784 350 aaPredicted RBP13.54□□□□□ -0.24
CCDC88A-201ENST00000263630 TRAPPC6BQ86SZ2 158 aa13.54□□□□□ -0.24
CCDC88A-201ENST00000263630 RASGEF1CQ8N431 466 aa13.54□□□□□ -0.24
CCDC88A-201ENST00000263630 NSMAFQ92636 917 aa13.54□□□□□ -0.24
CCDC88A-201ENST00000263630 P2RY11Q96G91 374 aa13.54□□□□□ -0.24
CCDC88A-201ENST00000263630 PTPN18Q99952 460 aa13.54□□□□□ -0.24
CCDC88A-201ENST00000263630 ITM2CQ9NQX7 267 aa13.54□□□□□ -0.24
CCDC88A-201ENST00000263630 A0A1W2PPL8 197 aa13.54□□□□□ -0.24
CCDC88A-201ENST00000263630 CD79BP40259 229 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms