RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 MANBAO00462 879 aa18.57■□□□□ 0.56
UPF1-201ENST00000262803 GMFGO60234 142 aa18.57■□□□□ 0.56
UPF1-201ENST00000262803 FGF18O76093 207 aa18.57■□□□□ 0.56
UPF1-201ENST00000262803 CHRM5P08912 532 aaPredicted RBP18.57■□□□□ 0.56
UPF1-201ENST00000262803 BMP8BP34820 402 aa18.57■□□□□ 0.56
UPF1-201ENST00000262803 TUBA3CQ13748 450 aa18.57■□□□□ 0.56
UPF1-201ENST00000262803 PLEKHG6Q3KR16 790 aa18.57■□□□□ 0.56
UPF1-201ENST00000262803 DLK2Q6UY11 383 aa18.57■□□□□ 0.56
UPF1-201ENST00000262803 BMP8AQ7Z5Y6 402 aa18.57■□□□□ 0.56
UPF1-201ENST00000262803 RAD9AQ99638 391 aa18.57■□□□□ 0.56
UPF1-201ENST00000262803 SMOQ99835 787 aa18.57■□□□□ 0.56
UPF1-201ENST00000262803 METTL7AQ9H8H3 244 aa18.57■□□□□ 0.56
UPF1-201ENST00000262803 TRIM36Q9NQ86 728 aa18.57■□□□□ 0.56
UPF1-201ENST00000262803 TUBA8Q9NY65 449 aaPredicted RBP18.57■□□□□ 0.56
UPF1-201ENST00000262803 DKKL1Q9UK85 242 aa18.57■□□□□ 0.56
UPF1-201ENST00000262803 LCHNA4D1U4 455 aa18.57■□□□□ 0.56
UPF1-201ENST00000262803 C2orf74A8MZ97 194 aa18.57■□□□□ 0.56
UPF1-201ENST00000262803 TSPAN6O43657 245 aa18.57■□□□□ 0.56
UPF1-201ENST00000262803 MPC1LP0DKB6 136 aa18.57■□□□□ 0.56
UPF1-201ENST00000262803 CDH15P55291 814 aa18.57■□□□□ 0.56
UPF1-201ENST00000262803 ZNF792Q3KQV3 632 aa18.57■□□□□ 0.56
UPF1-201ENST00000262803 ZNF550Q7Z398 422 aa18.57■□□□□ 0.56
UPF1-201ENST00000262803 KCTD7Q96MP8 289 aa18.57■□□□□ 0.56
UPF1-201ENST00000262803 TAC3Q9UHF0 121 aa18.57■□□□□ 0.56
UPF1-201ENST00000262803 EFCAB9A8MZ26 197 aa18.56■□□□□ 0.56
UPF1-201ENST00000262803 TYRP14679 529 aa18.56■□□□□ 0.56
UPF1-201ENST00000262803 SLC6A6P31641 620 aa18.56■□□□□ 0.56
UPF1-201ENST00000262803 RHDQ02161 417 aa18.56■□□□□ 0.56
UPF1-201ENST00000262803 EIF5AL1Q6IS14 154 aaKnown RBP18.56■□□□□ 0.56
UPF1-201ENST00000262803 SMARCD3Q6STE5 483 aa18.56■□□□□ 0.56
UPF1-201ENST00000262803 GALNTL5Q7Z4T8 443 aa18.56■□□□□ 0.56
UPF1-201ENST00000262803 SLC44A3Q8N4M1 653 aa18.56■□□□□ 0.56
UPF1-201ENST00000262803 TMBIM1Q969X1 311 aa18.56■□□□□ 0.56
UPF1-201ENST00000262803 TBC1D24Q9ULP9 559 aa18.56■□□□□ 0.56
UPF1-201ENST00000262803 IFT52Q9Y366 437 aa18.56■□□□□ 0.56
UPF1-201ENST00000262803 RBMX2Q9Y388 322 aaKnown RBP18.56■□□□□ 0.56
UPF1-201ENST00000262803 A0A1W2PRQ8 180 aa18.56■□□□□ 0.56
UPF1-201ENST00000262803 L7N2F9 121 aa18.56■□□□□ 0.56
UPF1-201ENST00000262803 SAP18O00422 153 aaKnown RBP18.56■□□□□ 0.56
UPF1-201ENST00000262803 FANCGO15287 622 aa18.56■□□□□ 0.56
UPF1-201ENST00000262803 SCGNO76038 276 aa18.56■□□□□ 0.56
UPF1-201ENST00000262803 CYP11A1P05108 521 aa18.56■□□□□ 0.56
UPF1-201ENST00000262803 S100A6P06703 90 aa18.56■□□□□ 0.56
UPF1-201ENST00000262803 DLDP09622 509 aaKnown RBP18.56■□□□□ 0.56
UPF1-201ENST00000262803 VAMP2P63027 116 aa18.56■□□□□ 0.56
UPF1-201ENST00000262803 RING1Q06587 406 aa18.56■□□□□ 0.56
UPF1-201ENST00000262803 IRF5Q13568 498 aa18.56■□□□□ 0.56
UPF1-201ENST00000262803 CMTR2Q8IYT2 770 aaKnown RBP18.56■□□□□ 0.56
UPF1-201ENST00000262803 FAM210AQ96ND0 272 aa18.56■□□□□ 0.56
UPF1-201ENST00000262803 ERMAPQ96PL5 475 aaPredicted RBP18.56■□□□□ 0.56
UPF1-201ENST00000262803 MND1Q9BWT6 205 aa18.56■□□□□ 0.56
UPF1-201ENST00000262803 MOV10Q9HCE1 1003 aaKnown RBP18.56■□□□□ 0.56
UPF1-201ENST00000262803 NLE1Q9NVX2 485 aaPredicted RBP18.56■□□□□ 0.56
UPF1-201ENST00000262803 SLC11A1P49279 550 aa18.56■□□□□ 0.56
UPF1-201ENST00000262803 SLC2A7Q6PXP3 512 aa18.56■□□□□ 0.56
UPF1-201ENST00000262803 LMX1AQ8TE12 382 aa18.56■□□□□ 0.56
UPF1-201ENST00000262803 TBC1D17Q9HA65 648 aa18.56■□□□□ 0.56
UPF1-201ENST00000262803 LEFTY2O00292 366 aa18.56■□□□□ 0.56
UPF1-201ENST00000262803 DFNA5O60443 496 aa18.56■□□□□ 0.56
UPF1-201ENST00000262803 CSTBP04080 98 aaKnown RBP18.56■□□□□ 0.56
UPF1-201ENST00000262803 PFKLP17858 780 aa18.56■□□□□ 0.56
UPF1-201ENST00000262803 ITIH1P19827 911 aa18.56■□□□□ 0.56
UPF1-201ENST00000262803 KCNQ1P51787 676 aa18.56■□□□□ 0.56
UPF1-201ENST00000262803 CASP6P55212 293 aa18.56■□□□□ 0.56
UPF1-201ENST00000262803 KLK6Q92876 244 aa18.56■□□□□ 0.56
UPF1-201ENST00000262803 MED11Q9P086 117 aa18.56■□□□□ 0.56
UPF1-201ENST00000262803 TNFRSF10DQ9UBN6 386 aa18.56■□□□□ 0.56
UPF1-201ENST00000262803 SEC14L4Q9UDX3 406 aa18.56■□□□□ 0.56
UPF1-201ENST00000262803 MTMR11A4FU01 709 aa18.55■□□□□ 0.56
UPF1-201ENST00000262803 SYNGR4O95473 234 aa18.55■□□□□ 0.56
UPF1-201ENST00000262803 ZNF8P17098 575 aaPredicted RBP18.55■□□□□ 0.56
UPF1-201ENST00000262803 RPS21P63220 83 aaKnown RBP18.55■□□□□ 0.56
UPF1-201ENST00000262803 ABHD18Q0P651 414 aa18.55■□□□□ 0.56
UPF1-201ENST00000262803 EIF4HQ15056 248 aaKnown RBP18.55■□□□□ 0.56
UPF1-201ENST00000262803 NPTX1Q15818 432 aa18.55■□□□□ 0.56
UPF1-201ENST00000262803 UNQ6126/PRO20091Q6UXV3 157 aa18.55■□□□□ 0.56
UPF1-201ENST00000262803 FAM110BQ8TC76 370 aa18.55■□□□□ 0.56
UPF1-201ENST00000262803 TSPEARQ8WU66 669 aa18.55■□□□□ 0.56
UPF1-201ENST00000262803 SLC25A36Q96CQ1 311 aa18.55■□□□□ 0.56
UPF1-201ENST00000262803 G6PC3Q9BUM1 346 aa18.55■□□□□ 0.56
UPF1-201ENST00000262803 TTYH1Q9H313 450 aaPredicted RBP18.55■□□□□ 0.56
UPF1-201ENST00000262803 CTPS2Q9NRF8 586 aa18.55■□□□□ 0.56
UPF1-201ENST00000262803 NLGN3Q9NZ94 848 aa18.55■□□□□ 0.56
UPF1-201ENST00000262803 ACTR3BQ9P1U1 418 aa18.55■□□□□ 0.56
UPF1-201ENST00000262803 KCTD3Q9Y597 815 aa18.55■□□□□ 0.56
UPF1-201ENST00000262803 SLC25A25Q6KCM7 469 aa18.55■□□□□ 0.56
UPF1-201ENST00000262803 TMIGD1Q6UXZ0 262 aa18.55■□□□□ 0.56
UPF1-201ENST00000262803 LGI4Q8N135 537 aa18.55■□□□□ 0.56
UPF1-201ENST00000262803 BBS10Q8TAM1 723 aa18.55■□□□□ 0.56
UPF1-201ENST00000262803 RBP7Q96R05 134 aa18.55■□□□□ 0.56
UPF1-201ENST00000262803 C17orf62Q9BQA9 187 aa18.55■□□□□ 0.56
UPF1-201ENST00000262803 ARHGAP39Q9C0H5 1083 aa18.55■□□□□ 0.56
UPF1-201ENST00000262803 MKS1Q9NXB0 559 aa18.55■□□□□ 0.56
UPF1-201ENST00000262803 B4GALT7Q9UBV7 327 aa18.55■□□□□ 0.56
UPF1-201ENST00000262803 GRID2O43424 1007 aa18.55■□□□□ 0.56
UPF1-201ENST00000262803 CD36P16671 472 aa18.55■□□□□ 0.56
UPF1-201ENST00000262803 MPP2Q14168 576 aa18.55■□□□□ 0.56
UPF1-201ENST00000262803 PON3Q15166 354 aa18.55■□□□□ 0.56
UPF1-201ENST00000262803 ZBED5Q49AG3 693 aa18.55■□□□□ 0.56
UPF1-201ENST00000262803 LINGO2Q7L985 606 aa18.55■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms