RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 RAPGEFL1Q9UHV5 662 aa11.16□□□□□ -0.62
VPS4A-201ENST00000254950 LRCH1Q9Y2L9 728 aa11.16□□□□□ -0.62
VPS4A-201ENST00000254950 C15orf41Q9Y2V0 281 aa11.16□□□□□ -0.62
VPS4A-201ENST00000254950 PDCD11Q14690 1871 aaKnown RBP11.16□□□□□ -0.62
VPS4A-201ENST00000254950 TMEM202A6NGA9 273 aa11.16□□□□□ -0.62
VPS4A-201ENST00000254950 TNFRSF10CO14798 259 aa11.16□□□□□ -0.62
VPS4A-201ENST00000254950 CYP7B1O75881 506 aa11.16□□□□□ -0.62
VPS4A-201ENST00000254950 JUNP05412 331 aaKnown RBP11.16□□□□□ -0.62
VPS4A-201ENST00000254950 MAOBP27338 520 aa11.16□□□□□ -0.62
VPS4A-201ENST00000254950 MPIP34949 423 aa11.16□□□□□ -0.62
VPS4A-201ENST00000254950 AVPR1BP47901 424 aa11.16□□□□□ -0.62
VPS4A-201ENST00000254950 ASPGQ86U10 573 aa11.16□□□□□ -0.62
VPS4A-201ENST00000254950 C11orf74Q86VG3 221 aa11.16□□□□□ -0.62
VPS4A-201ENST00000254950 UBALD2Q8IYN6 164 aa11.16□□□□□ -0.62
VPS4A-201ENST00000254950 C3orf30Q96M34 536 aa11.16□□□□□ -0.62
VPS4A-201ENST00000254950 FOXQ1Q9C009 403 aa11.16□□□□□ -0.62
VPS4A-201ENST00000254950 PCDHAC1Q9H158 963 aa11.16□□□□□ -0.62
VPS4A-201ENST00000254950 EQTNQ9NQ60 294 aa11.16□□□□□ -0.62
VPS4A-201ENST00000254950 ZCCHC3Q9NUD5 404 aaKnown RBP11.16□□□□□ -0.62
VPS4A-201ENST00000254950 IMPAD1Q9NX62 359 aa11.16□□□□□ -0.62
VPS4A-201ENST00000254950 OR10H1Q9Y4A9 318 aa11.16□□□□□ -0.62
VPS4A-201ENST00000254950 ENTPD2Q9Y5L3 495 aa11.16□□□□□ -0.62
VPS4A-201ENST00000254950 NARSO43776 548 aaKnown RBP11.16□□□□□ -0.62
VPS4A-201ENST00000254950 ITGA2P17301 1181 aa11.16□□□□□ -0.62
VPS4A-201ENST00000254950 TAP2Q03519 686 aa11.16□□□□□ -0.62
VPS4A-201ENST00000254950 RPE65Q16518 533 aa11.16□□□□□ -0.62
VPS4A-201ENST00000254950 TMEM35AQ53FP2 167 aa11.16□□□□□ -0.62
VPS4A-201ENST00000254950 SFTPA1Q8IWL2 248 aa11.16□□□□□ -0.62
VPS4A-201ENST00000254950 CDX2Q99626 313 aaPredicted RBP11.16□□□□□ -0.62
VPS4A-201ENST00000254950 TMEM168Q9H0V1 697 aa11.16□□□□□ -0.62
VPS4A-201ENST00000254950 ATG2BQ96BY7 2078 aa11.15□□□□□ -0.62
VPS4A-201ENST00000254950 UBTFL6P0CB48 400 aaPredicted RBP11.15□□□□□ -0.62
VPS4A-201ENST00000254950 IGFALSP35858 605 aa11.15□□□□□ -0.62
VPS4A-201ENST00000254950 RPS15AP62244 130 aaKnown RBP11.15□□□□□ -0.62
VPS4A-201ENST00000254950 MINDY4Q4G0A6 757 aa11.15□□□□□ -0.62
VPS4A-201ENST00000254950 TTC33Q6PID6 262 aaPredicted RBP11.15□□□□□ -0.62
VPS4A-201ENST00000254950 P3H2Q8IVL5 708 aa11.15□□□□□ -0.62
VPS4A-201ENST00000254950 SPNS2Q8IVW8 549 aa11.15□□□□□ -0.62
VPS4A-201ENST00000254950 MAFAQ8NHW3 353 aaPredicted RBP11.15□□□□□ -0.62
VPS4A-201ENST00000254950 ZDHHC12Q96GR4 267 aa11.15□□□□□ -0.62
VPS4A-201ENST00000254950 RBM18Q96H35 190 aaKnown RBP11.15□□□□□ -0.62
VPS4A-201ENST00000254950 BRF2Q9HAW0 419 aa11.15□□□□□ -0.62
VPS4A-201ENST00000254950 CDC14AQ9UNH5 594 aa11.15□□□□□ -0.62
VPS4A-201ENST00000254950 SLC9A8Q9Y2E8 581 aa11.15□□□□□ -0.62
VPS4A-201ENST00000254950 IGLV3-16A0A075B6K0 115 aa11.15□□□□□ -0.62
VPS4A-201ENST00000254950 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa11.15□□□□□ -0.62
VPS4A-201ENST00000254950 FEZF1A0PJY2 475 aa11.15□□□□□ -0.62
VPS4A-201ENST00000254950 POM121BA6NF01 834 aa11.15□□□□□ -0.62
VPS4A-201ENST00000254950 AQP12BA6NM10 295 aa11.15□□□□□ -0.62
VPS4A-201ENST00000254950 TARM1B6A8C7 271 aa11.15□□□□□ -0.62
VPS4A-201ENST00000254950 GFYI3L273 518 aa11.15□□□□□ -0.62
VPS4A-201ENST00000254950 CXCR6O00574 342 aa11.15□□□□□ -0.62
VPS4A-201ENST00000254950 TIPRLO75663 272 aa11.15□□□□□ -0.62
VPS4A-201ENST00000254950 PIK3CBP42338 1070 aa11.15□□□□□ -0.62
VPS4A-201ENST00000254950 B4GALNT1Q00973 533 aa11.15□□□□□ -0.62
VPS4A-201ENST00000254950 LRIT3Q3SXY7 679 aa11.15□□□□□ -0.62
VPS4A-201ENST00000254950 FGD3Q5JSP0 725 aa11.15□□□□□ -0.62
VPS4A-201ENST00000254950 METRNLQ641Q3 311 aa11.15□□□□□ -0.62
VPS4A-201ENST00000254950 AQP12AQ8IXF9 295 aa11.15□□□□□ -0.62
VPS4A-201ENST00000254950 RBM12BQ8IXT5 1001 aaKnown RBP11.15□□□□□ -0.62
VPS4A-201ENST00000254950 TMEFF1Q8IYR6 380 aa11.15□□□□□ -0.62
VPS4A-201ENST00000254950 MICU2Q8IYU8 434 aa11.15□□□□□ -0.62
VPS4A-201ENST00000254950 KRTCAP2Q8N6L1 136 aa11.15□□□□□ -0.62
VPS4A-201ENST00000254950 OR1E3Q8WZA6 343 aa11.15□□□□□ -0.62
VPS4A-201ENST00000254950 PLEKHA8Q96JA3 519 aa11.15□□□□□ -0.62
VPS4A-201ENST00000254950 C6orf106Q9H6K1 298 aaPredicted RBP11.15□□□□□ -0.62
VPS4A-201ENST00000254950 IL21RQ9HBE5 538 aa11.15□□□□□ -0.62
VPS4A-201ENST00000254950 LTB4R2Q9NPC1 389 aa11.15□□□□□ -0.62
VPS4A-201ENST00000254950 DNAAF2Q9NVR5 837 aaKnown RBP11.15□□□□□ -0.62
VPS4A-201ENST00000254950 OR7A17O14581 309 aa11.15□□□□□ -0.63
VPS4A-201ENST00000254950 CST1P01037 141 aa11.15□□□□□ -0.63
VPS4A-201ENST00000254950 NCK1P16333 377 aa11.15□□□□□ -0.63
VPS4A-201ENST00000254950 ENGP17813 658 aa11.15□□□□□ -0.63
VPS4A-201ENST00000254950 NCBP2P52298 156 aaKnown RBP eCLIP11.15□□□□□ -0.63
VPS4A-201ENST00000254950 PPP2CBP62714 309 aa11.15□□□□□ -0.63
VPS4A-201ENST00000254950 PPP2CAP67775 309 aa11.15□□□□□ -0.63
VPS4A-201ENST00000254950 KIR2DS3Q14952 304 aa11.15□□□□□ -0.63
VPS4A-201ENST00000254950 RABL3Q5HYI8 236 aa11.15□□□□□ -0.63
VPS4A-201ENST00000254950 COQ5Q5HYK3 327 aa11.15□□□□□ -0.63
VPS4A-201ENST00000254950 ATG9BQ674R7 924 aa11.15□□□□□ -0.63
VPS4A-201ENST00000254950 FIGLAQ6QHK4 219 aa11.15□□□□□ -0.63
VPS4A-201ENST00000254950 SPESP1Q6UW49 350 aa11.15□□□□□ -0.63
VPS4A-201ENST00000254950 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP11.15□□□□□ -0.63
VPS4A-201ENST00000254950 SLC47A1Q96FL8 570 aa11.15□□□□□ -0.63
VPS4A-201ENST00000254950 APIPQ96GX9 242 aa11.15□□□□□ -0.63
VPS4A-201ENST00000254950 KCNC2Q96PR1 638 aa11.15□□□□□ -0.63
VPS4A-201ENST00000254950 TMEM79Q9BSE2 394 aa11.15□□□□□ -0.63
VPS4A-201ENST00000254950 TMEM45AQ9NWC5 275 aa11.15□□□□□ -0.63
VPS4A-201ENST00000254950 PCDHGB3Q9Y5G1 929 aa11.15□□□□□ -0.63
VPS4A-201ENST00000254950 FAM220BPB1ANY3 271 aa11.14□□□□□ -0.63
VPS4A-201ENST00000254950 HS6ST1O60243 411 aa11.14□□□□□ -0.63
VPS4A-201ENST00000254950 SDC3O75056 442 aa11.14□□□□□ -0.63
VPS4A-201ENST00000254950 TSPAN12O95859 305 aa11.14□□□□□ -0.63
VPS4A-201ENST00000254950 MRPS35P82673 323 aaKnown RBP11.14□□□□□ -0.63
VPS4A-201ENST00000254950 ABHD18Q0P651 414 aa11.14□□□□□ -0.63
VPS4A-201ENST00000254950 GGTA1PQ4G0N0 100 aa11.14□□□□□ -0.63
VPS4A-201ENST00000254950 LYSMD4Q5XG99 296 aa11.14□□□□□ -0.63
VPS4A-201ENST00000254950 Q6ZS52 159 aa11.14□□□□□ -0.63
VPS4A-201ENST00000254950 DHRSXQ8N5I4 330 aa11.14□□□□□ -0.63
VPS4A-201ENST00000254950 OR13H1Q8NG92 308 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms