RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 SLC10A3P09131 477 aa11.96□□□□□ -0.5
NUP88-201ENST00000225696 PRPS1L1P21108 318 aa11.96□□□□□ -0.5
NUP88-201ENST00000225696 PIK3CBP42338 1070 aa11.96□□□□□ -0.5
NUP88-201ENST00000225696 SLC6A12P48065 614 aa11.96□□□□□ -0.5
NUP88-201ENST00000225696 CHIT1Q13231 466 aa11.96□□□□□ -0.5
NUP88-201ENST00000225696 BOP1Q14137 746 aaKnown RBP11.96□□□□□ -0.5
NUP88-201ENST00000225696 ATP13A5Q4VNC0 1218 aa11.96□□□□□ -0.5
NUP88-201ENST00000225696 LRRC73Q5JTD7 316 aa11.96□□□□□ -0.5
NUP88-201ENST00000225696 PDE4DIPQ5VU43 2346 aa11.96□□□□□ -0.5
NUP88-201ENST00000225696 THOC7Q6I9Y2 204 aaKnown RBP11.96□□□□□ -0.5
NUP88-201ENST00000225696 SERPINA13PQ6UXR4 307 aa11.96□□□□□ -0.5
NUP88-201ENST00000225696 CHST9Q7L1S5 443 aa11.96□□□□□ -0.5
NUP88-201ENST00000225696 NRARPQ7Z6K4 114 aa11.96□□□□□ -0.5
NUP88-201ENST00000225696 PAF1Q8N7H5 531 aa11.96□□□□□ -0.5
NUP88-201ENST00000225696 L3MBTL4Q8NA19 623 aa11.96□□□□□ -0.5
NUP88-201ENST00000225696 B3GNT7Q8NFL0 401 aa11.96□□□□□ -0.5
NUP88-201ENST00000225696 FCGR1BQ92637 280 aa11.96□□□□□ -0.5
NUP88-201ENST00000225696 MYDGFQ969H8 173 aa11.96□□□□□ -0.5
NUP88-201ENST00000225696 COPS8Q99627 209 aa11.96□□□□□ -0.5
NUP88-201ENST00000225696 HTATIP2Q9BUP3 242 aa11.96□□□□□ -0.5
NUP88-201ENST00000225696 TMEM121BQ9BXQ6 578 aaPredicted RBP11.96□□□□□ -0.5
NUP88-201ENST00000225696 PLCXD1Q9NUJ7 323 aa11.96□□□□□ -0.5
NUP88-201ENST00000225696 PCDHGB3Q9Y5G1 929 aa11.96□□□□□ -0.5
NUP88-201ENST00000225696 SCN8AQ9UQD0 1980 aa11.95□□□□□ -0.5
NUP88-201ENST00000225696 H3BM21 787 aa11.95□□□□□ -0.5
NUP88-201ENST00000225696 ADAMTS4O75173 837 aa11.95□□□□□ -0.5
NUP88-201ENST00000225696 MTX2O75431 263 aa11.95□□□□□ -0.5
NUP88-201ENST00000225696 CYBAP13498 195 aa11.95□□□□□ -0.5
NUP88-201ENST00000225696 HOXB6P17509 224 aaKnown RBP11.95□□□□□ -0.5
NUP88-201ENST00000225696 PRPH2P23942 346 aa11.95□□□□□ -0.5
NUP88-201ENST00000225696 CDH12P55289 794 aa11.95□□□□□ -0.5
NUP88-201ENST00000225696 TAF1CQ15572 869 aaPredicted RBP11.95□□□□□ -0.5
NUP88-201ENST00000225696 LRRC26Q2I0M4 334 aa11.95□□□□□ -0.5
NUP88-201ENST00000225696 EXOC3L2Q2M3D2 409 aa11.95□□□□□ -0.5
NUP88-201ENST00000225696 ATAD3CQ5T2N8 411 aa11.95□□□□□ -0.5
NUP88-201ENST00000225696 HECTD3Q5T447 861 aa11.95□□□□□ -0.5
NUP88-201ENST00000225696 C10orf62Q5T681 223 aaPredicted RBP11.95□□□□□ -0.5
NUP88-201ENST00000225696 AGAP6Q5VW22 663 aa11.95□□□□□ -0.5
NUP88-201ENST00000225696 CCDC190Q86UF4 302 aa11.95□□□□□ -0.5
NUP88-201ENST00000225696 ATCAYQ86WG3 371 aa11.95□□□□□ -0.5
NUP88-201ENST00000225696 STX19Q8N4C7 294 aa11.95□□□□□ -0.5
NUP88-201ENST00000225696 OR10G2Q8NGC3 310 aa11.95□□□□□ -0.5
NUP88-201ENST00000225696 BCL7CQ8WUZ0 217 aaPredicted RBP11.95□□□□□ -0.5
NUP88-201ENST00000225696 VOPP1Q96AW1 172 aa11.95□□□□□ -0.5
NUP88-201ENST00000225696 AGAP4Q96P64 663 aa11.95□□□□□ -0.5
NUP88-201ENST00000225696 SLC22A12Q96S37 553 aa11.95□□□□□ -0.5
NUP88-201ENST00000225696 NUAK2Q9H093 628 aa11.95□□□□□ -0.5
NUP88-201ENST00000225696 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.95□□□□□ -0.5
NUP88-201ENST00000225696 CWH43Q9H720 699 aa11.95□□□□□ -0.5
NUP88-201ENST00000225696 CCDC59Q9P031 241 aaKnown RBP11.95□□□□□ -0.5
NUP88-201ENST00000225696 FAM8A1Q9UBU6 413 aa11.95□□□□□ -0.5
NUP88-201ENST00000225696 MUTYHQ9UIF7 546 aa11.95□□□□□ -0.5
NUP88-201ENST00000225696 CLEC4EQ9ULY5 219 aa11.95□□□□□ -0.5
NUP88-201ENST00000225696 PCDHB11Q9Y5F2 797 aa11.95□□□□□ -0.5
NUP88-201ENST00000225696 LINC00854A0A1B0GVQ3 168 aa11.95□□□□□ -0.5
NUP88-201ENST00000225696 C1orf226A1L170 272 aa11.95□□□□□ -0.5
NUP88-201ENST00000225696 ANKRD34BA5PLL1 514 aa11.95□□□□□ -0.5
NUP88-201ENST00000225696 PCDH17O14917 1159 aa11.95□□□□□ -0.5
NUP88-201ENST00000225696 GUCY1B2O75343 617 aa11.95□□□□□ -0.5
NUP88-201ENST00000225696 GPX5O75715 221 aa11.95□□□□□ -0.5
NUP88-201ENST00000225696 EOMESO95936 686 aa11.95□□□□□ -0.5
NUP88-201ENST00000225696 HTR3AP46098 478 aa11.95□□□□□ -0.5
NUP88-201ENST00000225696 SLC11A1P49279 550 aa11.95□□□□□ -0.5
NUP88-201ENST00000225696 DMPKQ09013 629 aa11.95□□□□□ -0.5
NUP88-201ENST00000225696 RGNQ15493 299 aa11.95□□□□□ -0.5
NUP88-201ENST00000225696 MED22Q15528 200 aa11.95□□□□□ -0.5
NUP88-201ENST00000225696 SSX1Q16384 188 aa11.95□□□□□ -0.5
NUP88-201ENST00000225696 TSTQ16762 297 aaKnown RBP11.95□□□□□ -0.5
NUP88-201ENST00000225696 MLIPQ5VWP3 458 aa11.95□□□□□ -0.5
NUP88-201ENST00000225696 FAM217AQ8IXS0 508 aa11.95□□□□□ -0.5
NUP88-201ENST00000225696 CPA6Q8N4T0 437 aa11.95□□□□□ -0.5
NUP88-201ENST00000225696 OR4C15Q8NGM1 316 aa11.95□□□□□ -0.5
NUP88-201ENST00000225696 GTPBP3Q969Y2 492 aaKnown RBP11.95□□□□□ -0.5
NUP88-201ENST00000225696 ALG14Q96F25 216 aa11.95□□□□□ -0.5
NUP88-201ENST00000225696 DMRTB1Q96MA1 342 aa11.95□□□□□ -0.5
NUP88-201ENST00000225696 YME1L1Q96TA2 773 aa11.95□□□□□ -0.5
NUP88-201ENST00000225696 RAD9AQ99638 391 aa11.95□□□□□ -0.5
NUP88-201ENST00000225696 DOHHQ9BU89 302 aa11.95□□□□□ -0.5
NUP88-201ENST00000225696 TTLL2Q9BWV7 592 aa11.95□□□□□ -0.5
NUP88-201ENST00000225696 BARHL1Q9BZE3 327 aa11.95□□□□□ -0.5
NUP88-201ENST00000225696 ARHGAP39Q9C0H5 1083 aa11.95□□□□□ -0.5
NUP88-201ENST00000225696 NDEL1Q9GZM8 345 aa11.95□□□□□ -0.5
NUP88-201ENST00000225696 TMPRSS11EQ9UL52 423 aa11.95□□□□□ -0.5
NUP88-201ENST00000225696 TMEM98Q9Y2Y6 226 aa11.95□□□□□ -0.5
NUP88-201ENST00000225696 A3GALT2U3KPV4 340 aa11.95□□□□□ -0.5
NUP88-201ENST00000225696 PRRC2BQ5JSZ5 2229 aaKnown RBP11.95□□□□□ -0.5
NUP88-201ENST00000225696 FAM227AF5H4B4 570 aa11.94□□□□□ -0.5
NUP88-201ENST00000225696 RGS13O14921 159 aa11.94□□□□□ -0.5
NUP88-201ENST00000225696 HOXC11O43248 304 aaPredicted RBP11.94□□□□□ -0.5
NUP88-201ENST00000225696 ZW10O43264 779 aa11.94□□□□□ -0.5
NUP88-201ENST00000225696 ARHGEF15O94989 841 aa11.94□□□□□ -0.5
NUP88-201ENST00000225696 MED26O95402 600 aa11.94□□□□□ -0.5
NUP88-201ENST00000225696 C1SP09871 688 aa11.94□□□□□ -0.5
NUP88-201ENST00000225696 ETFAP13804 333 aa11.94□□□□□ -0.5
NUP88-201ENST00000225696 HMGA1P17096 107 aaKnown RBP11.94□□□□□ -0.5
NUP88-201ENST00000225696 OR2B6P58173 313 aa11.94□□□□□ -0.5
NUP88-201ENST00000225696 PFN3P60673 137 aa11.94□□□□□ -0.5
NUP88-201ENST00000225696 RAE1P78406 368 aaKnown RBP11.94□□□□□ -0.5
NUP88-201ENST00000225696 VEZF1Q14119 521 aa11.94□□□□□ -0.5
NUP88-201ENST00000225696 HKDC1Q2TB90 917 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms