RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 NHLH2Q02577 135 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 SNTB1Q13884 538 aaKnown RBP3.47□□□□□ -1.85
SCN1A-221ENST00000641996 POTEHQ6S545 545 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 POTEGQ6S5H5 508 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 SLC13A3Q8WWT9 602 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 SERINC2Q96SA4 455 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 RMND5AQ9H871 391 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 AMFRQ9UKV5 643 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 ASB14A6NK59 587 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 E9PAM4 449 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 AQP9O43315 295 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 CSF1P09603 554 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 CCNYL3P0C7X3 344 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 PNMTP11086 282 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 DRD1P21728 446 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 FPR3P25089 353 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 ACOT2P49753 483 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 SF1Q15637 639 aaKnown RBP3.47□□□□□ -1.85
SCN1A-221ENST00000641996 AENQ8WTP8 325 aaKnown RBP3.47□□□□□ -1.85
SCN1A-221ENST00000641996 SDR42E1Q8WUS8 393 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 IL21RQ9HBE5 538 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 PCDHA7Q9UN72 937 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 C2orf71A6NGG8 1288 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 H3BNC9 293 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 SSX4O60224 188 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 PDGFAP04085 211 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 UGT2B7P16662 529 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 HLA-DMAP28067 261 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 CD6P30203 668 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 MLLT10P55197 1068 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 NRF1Q16656 503 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 ATAT1Q5SQI0 421 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 PADI6Q6TGC4 694 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 RNF44Q7L0R7 432 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 AMIGO2Q86SJ2 522 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 ATP6V0D2Q8N8Y2 350 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 PPP4R1Q8TF05 950 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 CXorf58Q96LI9 332 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 ALKBH4Q9NXW9 302 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 TAS2R7Q9NYW3 318 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 ENTPD5O75356 428 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 SAGP10523 405 aaPredicted RBP3.47□□□□□ -1.85
SCN1A-221ENST00000641996 CEACAM3P40198 252 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 RAB13P51153 203 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 MGAT3Q09327 533 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 SLC5A12Q1EHB4 618 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 RRM2BQ7LG56 351 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 SLITRK4Q8IW52 837 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 ISG20Q96AZ6 181 aaKnown RBP3.47□□□□□ -1.85
SCN1A-221ENST00000641996 ELMOD3Q96FG2 381 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 TWNKQ96RR1 684 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 NMUR2Q9GZQ4 415 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 CARS2Q9HA77 564 aaKnown RBP3.47□□□□□ -1.85
SCN1A-221ENST00000641996 ZNF639Q9UID6 485 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 BAZ2AQ9UIF9 1905 aaKnown RBP3.47□□□□□ -1.85
SCN1A-221ENST00000641996 A0A1W2PPV4 95 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 AQP7P3A6NL99 342 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 GOSR2O14653 212 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 PHYHO14832 338 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 ABLIM3O94929 683 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 SMIM6P0DI80 62 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 AMD1P17707 334 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 ILKQ13418 452 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 MGAT5BQ3V5L5 792 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 TMEM220Q6QAJ8 160 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 NPNTQ6UXI9 565 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 C12orf54Q6X4T0 127 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 KANSL1Q7Z3B3 1105 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 REPS2Q8NFH8 660 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 OR9Q1Q8NGQ5 310 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 ZDHHC1Q8WTX9 485 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 S100ZQ8WXG8 99 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 P2RX5Q93086 422 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 AARSD1Q9BTE6 412 aaKnown RBP3.47□□□□□ -1.85
SCN1A-221ENST00000641996 KATNB1Q9BVA0 655 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 MRIQ9BWK5 157 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 DHX33Q9H6R0 707 aaKnown RBP3.47□□□□□ -1.85
SCN1A-221ENST00000641996 ZNF430Q9H8G1 570 aaPredicted RBP3.47□□□□□ -1.85
SCN1A-221ENST00000641996 FOLH1BQ9HBA9 442 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 SLC23A1Q9UHI7 598 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 ERRFI1Q9UJM3 462 aaPredicted RBP3.47□□□□□ -1.85
SCN1A-221ENST00000641996 CNOT6Q9ULM6 557 aaKnown RBP3.47□□□□□ -1.85
SCN1A-221ENST00000641996 DENND4AQ7Z401 1863 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 AKAP12Q02952 1782 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 PRAMEF33A0A0G2JMD5 474 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 CFLARO15519 480 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 PRAMEF10O60809 474 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 B4GALT2O60909 372 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 SNRPB2P08579 225 aaKnown RBP3.47□□□□□ -1.85
SCN1A-221ENST00000641996 DRD2P14416 443 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 OR1E1P30953 314 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 BST1Q10588 318 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 MRPL23Q16540 153 aaKnown RBP3.47□□□□□ -1.85
SCN1A-221ENST00000641996 AVPI1Q5T686 147 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 EIF4E3Q8N5X7 224 aaKnown RBP3.47□□□□□ -1.85
SCN1A-221ENST00000641996 EXD3Q8N9H8 876 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 SLC35G2Q8TBE7 412 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 MYRFLQ96LU7 910 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 CCDC17Q96LX7 622 aa3.47□□□□□ -1.85
SCN1A-221ENST00000641996 WDR11Q9BZH6 1224 aa3.47□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms