RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 LURAP1Q96LR2 239 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 DCBLD2Q96PD2 775 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 DEFB118Q96PH6 123 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 ORAI3Q9BRQ5 295 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 KATNBL1Q9H079 304 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 KCNF1Q9H3M0 494 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 ASB7Q9H672 318 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 POLD4Q9HCU8 107 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 SAR1AQ9NR31 198 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 PTTG3PQ9NZH4 202 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 PPP4R1LQ9P1A2 415 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 POMPQ9Y244 141 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 DEPDC5O75140 1603 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 A0A0U1RQJ8 604 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 MEIOCA2RUB1 952 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 SOWAHBA6NEL2 793 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 L7N2F9 121 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 SLC16A3O15427 465 aaKnown RBP2.71□□□□□ -1.98
SCN1A-219ENST00000641575 FGF10O15520 208 aaPredicted RBP2.71□□□□□ -1.98
SCN1A-219ENST00000641575 NARSO43776 548 aaKnown RBP2.71□□□□□ -1.98
SCN1A-219ENST00000641575 F2RP25116 425 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 NMT1P30419 496 aaKnown RBP2.71□□□□□ -1.98
SCN1A-219ENST00000641575 RORCP51449 518 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 MTMR2Q13614 643 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 NPY5RQ15761 445 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 SLC14A2Q15849 920 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 C14orf28Q4W4Y0 310 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 FAM122CQ6P4D5 195 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 ZNF550Q7Z398 422 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 KIAA0319LQ8IZA0 1049 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 OFCC1Q8IZS5 231 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 FBXW8Q8N3Y1 598 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 M1APQ8TC57 530 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 C11orf24Q96F05 449 aaPredicted RBP2.71□□□□□ -1.98
SCN1A-219ENST00000641575 SLC47A1Q96FL8 570 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 INPP4AQ96PE3 977 aaPredicted RBP2.71□□□□□ -1.98
SCN1A-219ENST00000641575 HERPUD2Q9BSE4 406 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 KCNH6Q9H252 994 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 RIOX1Q9H6W3 641 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 BIN3Q9NQY0 253 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 ABRACLQ9P1F3 81 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 IGSF9Q9P2J2 1179 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 PCDHGA8Q9Y5G5 932 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 ADGRB2O60241 1585 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 PTPRJQ12913 1337 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 FRMPD4Q14CM0 1322 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 PRAMEF22A3QJZ6 481 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 FOXO6A8MYZ6 492 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 ATP6V1G2-DDX39BF2Z307 99 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 LATO43561 262 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 LILRB3O75022 631 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 CBX6O95503 412 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 CYP4B1P13584 511 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 SLC1A3P43003 542 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 NR2C2P49116 596 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 TTPAP49638 278 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 HINT1P49773 126 aaPredicted RBP2.71□□□□□ -1.98
SCN1A-219ENST00000641575 AP2S1P53680 142 aaPredicted RBP2.71□□□□□ -1.98
SCN1A-219ENST00000641575 NKX6-1P78426 367 aaPredicted RBP2.71□□□□□ -1.98
SCN1A-219ENST00000641575 EPHA7Q15375 998 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 NRF1Q16656 503 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 FAM69AQ5T7M9 428 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 CXorf57Q6NSI4 855 aaKnown RBP2.71□□□□□ -1.98
SCN1A-219ENST00000641575 DPY19L4Q7Z388 723 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 RTN4RL1Q86UN2 441 aaPredicted RBP2.71□□□□□ -1.98
SCN1A-219ENST00000641575 OR51D1Q8NGF3 324 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 OTUD7AQ8TE49 926 aaPredicted RBP2.71□□□□□ -1.98
SCN1A-219ENST00000641575 RHBDD1Q8TEB9 315 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 SSC4DQ8WTU2 575 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 RAB2BQ8WUD1 216 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 ZNF597Q96LX8 424 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 HGH1Q9BTY7 390 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 GPR174Q9BXC1 333 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 ANKRA2Q9H9E1 313 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 QPCTLQ9NXS2 382 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 PTBP2Q9UKA9 531 aaKnown RBP2.71□□□□□ -1.98
SCN1A-219ENST00000641575 GJD2Q9UKL4 321 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 EXOGQ9Y2C4 368 aaKnown RBP2.71□□□□□ -1.98
SCN1A-219ENST00000641575 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP2.71□□□□□ -1.98
SCN1A-219ENST00000641575 TUBGCP6Q96RT7 1819 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 FXYD6-FXYD2A0A087WZ82 144 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 EFCAB9A8MZ26 197 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 MKRN2OSH3BPM6 223 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 TLX2O43763 284 aaPredicted RBP2.71□□□□□ -1.98
SCN1A-219ENST00000641575 BRINP1O60477 761 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 ANGPTL1O95841 491 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 VDRP11473 427 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 SMPD1P17405 629 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 RFC3P40938 356 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 RPL35P42766 123 aaKnown RBP2.71□□□□□ -1.98
SCN1A-219ENST00000641575 DCDC1P59894 354 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 PRAMEF13Q5VWM6 474 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 FBXO46Q6PJ61 603 aaPredicted RBP2.71□□□□□ -1.98
SCN1A-219ENST00000641575 CRTC1Q6UUV9 634 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 CHST15Q7LFX5 561 aaPredicted RBP2.71□□□□□ -1.98
SCN1A-219ENST00000641575 GALNTL5Q7Z4T8 443 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 RBM23Q86U06 439 aaKnown RBP2.71□□□□□ -1.98
SCN1A-219ENST00000641575 TXNRD3Q86VQ6 643 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 TMEM151BQ8IW70 566 aa2.71□□□□□ -1.98
SCN1A-219ENST00000641575 ZNF610Q8N9Z0 462 aa2.71□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms