RNA–Protein interactions for RNA: ENST00000625299.1

PNKP-218, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 428 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-218ENST00000625299 CDC123O75794 336 aaPredicted RBP13.83□□□□□ -0.2
PNKP-218ENST00000625299 NEURL1O76050 574 aa13.83□□□□□ -0.2
PNKP-218ENST00000625299 SYF2O95926 243 aaKnown RBP13.83□□□□□ -0.2
PNKP-218ENST00000625299 IFNB1P01574 187 aa13.83□□□□□ -0.2
PNKP-218ENST00000625299 TPOP07202 933 aa13.83□□□□□ -0.2
PNKP-218ENST00000625299 ERGP11308 486 aa13.83□□□□□ -0.2
PNKP-218ENST00000625299 IL1RNP18510 177 aa13.83□□□□□ -0.2
PNKP-218ENST00000625299 FMO4P31512 558 aa13.83□□□□□ -0.2
PNKP-218ENST00000625299 AGTR2P50052 363 aa13.83□□□□□ -0.2
PNKP-218ENST00000625299 PNLIPRP1P54315 467 aa13.83□□□□□ -0.2
PNKP-218ENST00000625299 TAS2R50P59544 299 aa13.83□□□□□ -0.2
PNKP-218ENST00000625299 PRDX1Q06830 199 aaKnown RBP13.83□□□□□ -0.2
PNKP-218ENST00000625299 ACTN3Q08043 901 aaPredicted RBP13.83□□□□□ -0.2
PNKP-218ENST00000625299 PTK6Q13882 451 aa13.83□□□□□ -0.2
PNKP-218ENST00000625299 SFT2D3Q587I9 215 aa13.83□□□□□ -0.2
PNKP-218ENST00000625299 RNFT1Q5M7Z0 435 aa13.83□□□□□ -0.2
PNKP-218ENST00000625299 THEMIS2Q5TEJ8 643 aa13.83□□□□□ -0.2
PNKP-218ENST00000625299 CD163Q86VB7 1156 aa13.83□□□□□ -0.2
PNKP-218ENST00000625299 LRRC6Q86X45 466 aa13.83□□□□□ -0.2
PNKP-218ENST00000625299 CHERPQ8IWX8 916 aaKnown RBP13.83□□□□□ -0.2
PNKP-218ENST00000625299 MMP21Q8N119 569 aa13.83□□□□□ -0.2
PNKP-218ENST00000625299 SLC35B2Q8TB61 432 aa13.83□□□□□ -0.2
PNKP-218ENST00000625299 ZCCHC10Q8TBK6 192 aa13.83□□□□□ -0.2
PNKP-218ENST00000625299 M1APQ8TC57 530 aa13.83□□□□□ -0.2
PNKP-218ENST00000625299 MCOLN3Q8TDD5 553 aa13.83□□□□□ -0.2
PNKP-218ENST00000625299 ATG4AQ8WYN0 398 aa13.83□□□□□ -0.2
PNKP-218ENST00000625299 PKP4Q99569 1192 aa13.83□□□□□ -0.2
PNKP-218ENST00000625299 TREX2Q9BQ50 279 aaPredicted RBP13.83□□□□□ -0.2
PNKP-218ENST00000625299 MACROD1Q9BQ69 325 aa13.83□□□□□ -0.2
PNKP-218ENST00000625299 ZNF559Q9BR84 538 aa13.83□□□□□ -0.2
PNKP-218ENST00000625299 CDCP1Q9H5V8 836 aa13.83□□□□□ -0.2
PNKP-218ENST00000625299 MMP25Q9NPA2 562 aa13.83□□□□□ -0.2
PNKP-218ENST00000625299 DUSP10Q9Y6W6 482 aa13.83□□□□□ -0.2
PNKP-218ENST00000625299 ZNF469Q96JG9 3925 aaPredicted RBP13.82□□□□□ -0.2
PNKP-218ENST00000625299 TCRBV7S2A1N4TA0A589 114 aa13.82□□□□□ -0.2
PNKP-218ENST00000625299 MYO1CO00159 1063 aa13.82□□□□□ -0.2
PNKP-218ENST00000625299 SMAPO00193 183 aa13.82□□□□□ -0.2
PNKP-218ENST00000625299 NDC80O14777 642 aa13.82□□□□□ -0.2
PNKP-218ENST00000625299 TFECO14948 347 aaPredicted RBP13.82□□□□□ -0.2
PNKP-218ENST00000625299 CDC40O60508 579 aaKnown RBP eCLIP13.82□□□□□ -0.2
PNKP-218ENST00000625299 MATN4O95460 622 aa13.82□□□□□ -0.2
PNKP-218ENST00000625299 NSA2O95478 260 aaKnown RBP13.82□□□□□ -0.2
PNKP-218ENST00000625299 HOXB4P17483 251 aaPredicted RBP13.82□□□□□ -0.2
PNKP-218ENST00000625299 RPS3P23396 243 aaKnown RBP eCLIP13.82□□□□□ -0.2
PNKP-218ENST00000625299 CYLC1P35663 651 aaPredicted RBP13.82□□□□□ -0.2
PNKP-218ENST00000625299 FDFT1P37268 417 aa13.82□□□□□ -0.2
PNKP-218ENST00000625299 RFC3P40938 356 aa13.82□□□□□ -0.2
PNKP-218ENST00000625299 SESN2P58004 480 aaPredicted RBP13.82□□□□□ -0.2
PNKP-218ENST00000625299 CRADDP78560 199 aa13.82□□□□□ -0.2
PNKP-218ENST00000625299 ZNF468Q5VIY5 522 aaPredicted RBP13.82□□□□□ -0.2
PNKP-218ENST00000625299 PRUNE1Q86TP1 453 aa13.82□□□□□ -0.2
PNKP-218ENST00000625299 LPAR4Q99677 370 aa13.82□□□□□ -0.2
PNKP-218ENST00000625299 UCK2Q9BZX2 261 aa13.82□□□□□ -0.2
PNKP-218ENST00000625299 NPDC1Q9NQX5 325 aaPredicted RBP13.82□□□□□ -0.2
PNKP-218ENST00000625299 RAB6BQ9NRW1 208 aa13.82□□□□□ -0.2
PNKP-218ENST00000625299 FAM114A2Q9NRY5 505 aa13.82□□□□□ -0.2
PNKP-218ENST00000625299 TNFRSF10DQ9UBN6 386 aa13.82□□□□□ -0.2
PNKP-218ENST00000625299 PACSIN2Q9UNF0 486 aaPredicted RBP13.82□□□□□ -0.2
PNKP-218ENST00000625299 NIPBLQ6KC79 2804 aaeCLIP13.82□□□□□ -0.2
PNKP-218ENST00000625299 ANKHD1Q8IWZ3 2542 aaKnown RBP13.81□□□□□ -0.2
PNKP-218ENST00000625299 A0A1B0GTH9 108 aa13.81□□□□□ -0.2
PNKP-218ENST00000625299 ZNF839A8K0R7 811 aa13.81□□□□□ -0.2
PNKP-218ENST00000625299 FOXO6A8MYZ6 492 aa13.81□□□□□ -0.2
PNKP-218ENST00000625299 H7BY64 318 aa13.81□□□□□ -0.2
PNKP-218ENST00000625299 NME2P1O60361 137 aa13.81□□□□□ -0.2
PNKP-218ENST00000625299 RDH16O75452 317 aa13.81□□□□□ -0.2
PNKP-218ENST00000625299 CATP04040 527 aaKnown RBP13.81□□□□□ -0.2
PNKP-218ENST00000625299 APRTP07741 180 aa13.81□□□□□ -0.2
PNKP-218ENST00000625299 CYC1P08574 325 aa13.81□□□□□ -0.2
PNKP-218ENST00000625299 CHRM3P20309 590 aa13.81□□□□□ -0.2
PNKP-218ENST00000625299 NME2P22392 152 aa13.81□□□□□ -0.2
PNKP-218ENST00000625299 DNAJA1P31689 397 aaKnown RBP13.81□□□□□ -0.2
PNKP-218ENST00000625299 PTGS2P35354 604 aa13.81□□□□□ -0.2
PNKP-218ENST00000625299 MYBPHQ13203 477 aa13.81□□□□□ -0.2
PNKP-218ENST00000625299 KLF1Q13351 362 aaPredicted RBP13.81□□□□□ -0.2
PNKP-218ENST00000625299 ARHGAP19Q14CB8 494 aa13.81□□□□□ -0.2
PNKP-218ENST00000625299 ABRAXAS2Q15018 415 aa13.81□□□□□ -0.2
PNKP-218ENST00000625299 NSDHLQ15738 373 aa13.81□□□□□ -0.2
PNKP-218ENST00000625299 KLHL38Q2WGJ6 581 aa13.81□□□□□ -0.2
PNKP-218ENST00000625299 ACSBG2Q5FVE4 666 aa13.81□□□□□ -0.2
PNKP-218ENST00000625299 MPP5Q8N3R9 675 aa13.81□□□□□ -0.2
PNKP-218ENST00000625299 MARVELD2Q8N4S9 558 aa13.81□□□□□ -0.2
PNKP-218ENST00000625299 FAM57AQ8TBR7 257 aa13.81□□□□□ -0.2
PNKP-218ENST00000625299 PEX13Q92968 403 aa13.81□□□□□ -0.2
PNKP-218ENST00000625299 TSLPQ969D9 159 aa13.81□□□□□ -0.2
PNKP-218ENST00000625299 PRAP1Q96NZ9 151 aa13.81□□□□□ -0.2
PNKP-218ENST00000625299 EBNA1BP2Q99848 306 aaKnown RBP13.81□□□□□ -0.2
PNKP-218ENST00000625299 TMUB1Q9BVT8 246 aa13.81□□□□□ -0.2
PNKP-218ENST00000625299 GRID2IPA4D2P6 1211 aa13.8□□□□□ -0.2
PNKP-218ENST00000625299 ZNF860A6NHJ4 632 aa13.8□□□□□ -0.2
PNKP-218ENST00000625299 GOLGA8KD6RF30 607 aa13.8□□□□□ -0.2
PNKP-218ENST00000625299 GOLGA8TH3BQL2 631 aa13.8□□□□□ -0.2
PNKP-218ENST00000625299 PSIP1O75475 530 aaKnown RBP13.8□□□□□ -0.2
PNKP-218ENST00000625299 SLC16A8O95907 504 aa13.8□□□□□ -0.2
PNKP-218ENST00000625299 ETS1P14921 441 aa13.8□□□□□ -0.2
PNKP-218ENST00000625299 IGFBP2P18065 325 aa13.8□□□□□ -0.2
PNKP-218ENST00000625299 NMBRP28336 390 aa13.8□□□□□ -0.2
PNKP-218ENST00000625299 TPP2P29144 1249 aaPredicted RBP13.8□□□□□ -0.2
PNKP-218ENST00000625299 ATP5DP30049 168 aa13.8□□□□□ -0.2
PNKP-218ENST00000625299 BCL6P41182 706 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms