RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 CXorf40AQ8TE69 158 aa10.24□□□□□ -0.77
CUX1-221ENST00000622516 SNX19Q92543 992 aa10.24□□□□□ -0.77
CUX1-221ENST00000622516 NELL1Q92832 810 aa10.24□□□□□ -0.77
CUX1-221ENST00000622516 DUSP26Q9BV47 211 aa10.24□□□□□ -0.77
CUX1-221ENST00000622516 PBX4Q9BYU1 374 aa10.24□□□□□ -0.77
CUX1-221ENST00000622516 SLC6A17Q9H1V8 727 aa10.24□□□□□ -0.77
CUX1-221ENST00000622516 TOR3AQ9H497 397 aa10.24□□□□□ -0.77
CUX1-221ENST00000622516 VNN3Q9NY84 501 aa10.24□□□□□ -0.77
CUX1-221ENST00000622516 NFKBIL1Q9UBC1 381 aaPredicted RBP10.24□□□□□ -0.77
CUX1-221ENST00000622516 RUVBL1Q9Y265 456 aaKnown RBP10.24□□□□□ -0.77
CUX1-221ENST00000622516 MAN2B2Q9Y2E5 1009 aa10.24□□□□□ -0.77
CUX1-221ENST00000622516 MGAT4DA6NG13 374 aa10.23□□□□□ -0.77
CUX1-221ENST00000622516 EVPLLA8MZ36 301 aa10.23□□□□□ -0.77
CUX1-221ENST00000622516 SCELO95171 688 aa10.23□□□□□ -0.77
CUX1-221ENST00000622516 PAK4O96013 591 aaPredicted RBP10.23□□□□□ -0.77
CUX1-221ENST00000622516 RB1P06400 928 aa10.23□□□□□ -0.77
CUX1-221ENST00000622516 HNF4AP41235 474 aa10.23□□□□□ -0.77
CUX1-221ENST00000622516 ALDH3A2P51648 485 aa10.23□□□□□ -0.77
CUX1-221ENST00000622516 CSTF3Q12996 717 aaKnown RBP10.23□□□□□ -0.77
CUX1-221ENST00000622516 DAG1Q14118 895 aa10.23□□□□□ -0.77
CUX1-221ENST00000622516 SHHQ15465 462 aa10.23□□□□□ -0.77
CUX1-221ENST00000622516 CPTPQ5TA50 214 aa10.23□□□□□ -0.77
CUX1-221ENST00000622516 ZNF852Q6ZMS4 543 aa10.23□□□□□ -0.77
CUX1-221ENST00000622516 ARHGAP22Q7Z5H3 698 aa10.23□□□□□ -0.77
CUX1-221ENST00000622516 C11orf96Q7Z7L8 435 aa10.23□□□□□ -0.77
CUX1-221ENST00000622516 GALNT5Q7Z7M9 940 aa10.23□□□□□ -0.77
CUX1-221ENST00000622516 OR9A1PQ8NGU1 263 aa10.23□□□□□ -0.77
CUX1-221ENST00000622516 CIDECQ96AQ7 238 aaPredicted RBP10.23□□□□□ -0.77
CUX1-221ENST00000622516 PHF12Q96QT6 1004 aa10.23□□□□□ -0.77
CUX1-221ENST00000622516 MYOCQ99972 504 aa10.23□□□□□ -0.77
CUX1-221ENST00000622516 MBNL1Q9NR56 388 aaKnown RBP10.23□□□□□ -0.77
CUX1-221ENST00000622516 AASSQ9UDR5 926 aa10.23□□□□□ -0.77
CUX1-221ENST00000622516 RAPGEFL1Q9UHV5 662 aa10.23□□□□□ -0.77
CUX1-221ENST00000622516 ZNF639Q9UID6 485 aa10.23□□□□□ -0.77
CUX1-221ENST00000622516 ABCG2Q9UNQ0 655 aa10.23□□□□□ -0.77
CUX1-221ENST00000622516 WDR87Q6ZQQ6 2873 aa10.23□□□□□ -0.77
CUX1-221ENST00000622516 MYO10Q9HD67 2058 aa10.23□□□□□ -0.77
CUX1-221ENST00000622516 MYO1GB0I1T2 1018 aa10.23□□□□□ -0.77
CUX1-221ENST00000622516 PSMD11O00231 422 aa10.23□□□□□ -0.77
CUX1-221ENST00000622516 HS6ST1O60243 411 aa10.23□□□□□ -0.77
CUX1-221ENST00000622516 PCDH7O60245 1069 aa10.23□□□□□ -0.77
CUX1-221ENST00000622516 MYO1DO94832 1006 aa10.23□□□□□ -0.77
CUX1-221ENST00000622516 KAT7O95251 611 aa10.23□□□□□ -0.77
CUX1-221ENST00000622516 KCNK5O95279 499 aa10.23□□□□□ -0.77
CUX1-221ENST00000622516 FCARP24071 287 aa10.23□□□□□ -0.77
CUX1-221ENST00000622516 EEF1B2P24534 225 aaKnown RBP10.23□□□□□ -0.77
CUX1-221ENST00000622516 PSMB5P28074 263 aa10.23□□□□□ -0.77
CUX1-221ENST00000622516 CLCN2P51788 898 aa10.23□□□□□ -0.77
CUX1-221ENST00000622516 MAPK10P53779 464 aa10.23□□□□□ -0.77
CUX1-221ENST00000622516 ZNF385BQ569K4 471 aa10.23□□□□□ -0.77
CUX1-221ENST00000622516 DDX59Q5T1V6 619 aaKnown RBP eCLIP10.23□□□□□ -0.778e-7■■■■■ 33
CUX1-221ENST00000622516 MED27Q6P2C8 311 aa10.23□□□□□ -0.77
CUX1-221ENST00000622516 C11orf24Q96F05 449 aaPredicted RBP10.23□□□□□ -0.77
CUX1-221ENST00000622516 TPD52L3Q96J77 140 aa10.23□□□□□ -0.77
CUX1-221ENST00000622516 ZDHHC5Q9C0B5 715 aa10.23□□□□□ -0.77
CUX1-221ENST00000622516 TPT1P8Q9HAU6 139 aa10.23□□□□□ -0.77
CUX1-221ENST00000622516 DPP7Q9UHL4 492 aa10.23□□□□□ -0.77
CUX1-221ENST00000622516 EXO1Q9UQ84 846 aaKnown RBP10.23□□□□□ -0.77
CUX1-221ENST00000622516 CEPT1Q9Y6K0 416 aa10.23□□□□□ -0.77
CUX1-221ENST00000622516 A0A1W2PP55 124 aa10.23□□□□□ -0.77
CUX1-221ENST00000622516 SOBPA7XYQ1 873 aa10.23□□□□□ -0.77
CUX1-221ENST00000622516 FAM220BPB1ANY3 271 aa10.23□□□□□ -0.77
CUX1-221ENST00000622516 RTCAO00442 366 aaKnown RBP10.23□□□□□ -0.77
CUX1-221ENST00000622516 UGDHO60701 494 aa10.23□□□□□ -0.77
CUX1-221ENST00000622516 MITFO75030 526 aaPredicted RBP10.23□□□□□ -0.77
CUX1-221ENST00000622516 EPN2O95208 641 aa10.23□□□□□ -0.77
CUX1-221ENST00000622516 STATHP02808 62 aa10.23□□□□□ -0.77
CUX1-221ENST00000622516 KLK1P06870 262 aa10.23□□□□□ -0.77
CUX1-221ENST00000622516 IL7RP16871 459 aa10.23□□□□□ -0.77
CUX1-221ENST00000622516 PIGFQ07326 219 aa10.23□□□□□ -0.77
CUX1-221ENST00000622516 ABHD18Q0P651 414 aa10.23□□□□□ -0.77
CUX1-221ENST00000622516 MTAPQ13126 283 aa10.23□□□□□ -0.77
CUX1-221ENST00000622516 GAB1Q13480 694 aa10.23□□□□□ -0.77
CUX1-221ENST00000622516 RUNX3Q13761 415 aa10.23□□□□□ -0.77
CUX1-221ENST00000622516 NEDD8Q15843 81 aa10.23□□□□□ -0.77
CUX1-221ENST00000622516 ABRAXAS1Q6UWZ7 409 aa10.23□□□□□ -0.77
CUX1-221ENST00000622516 FAM20CQ8IXL6 584 aa10.23□□□□□ -0.77
CUX1-221ENST00000622516 AADATQ8N5Z0 425 aa10.23□□□□□ -0.77
CUX1-221ENST00000622516 TNIP2Q8NFZ5 429 aa10.23□□□□□ -0.77
CUX1-221ENST00000622516 OR5AK3PQ8NH89 298 aa10.23□□□□□ -0.77
CUX1-221ENST00000622516 FAM81AQ8TBF8 368 aa10.23□□□□□ -0.77
CUX1-221ENST00000622516 HCAR2Q8TDS4 363 aa10.23□□□□□ -0.77
CUX1-221ENST00000622516 PYURFQ96I23 114 aa10.23□□□□□ -0.77
CUX1-221ENST00000622516 PPP1R16AQ96I34 528 aa10.23□□□□□ -0.77
CUX1-221ENST00000622516 REXO5Q96IC2 774 aaKnown RBP10.23□□□□□ -0.77
CUX1-221ENST00000622516 HAUS8Q9BT25 410 aa10.23□□□□□ -0.77
CUX1-221ENST00000622516 OSBPL6Q9BZF3 934 aa10.23□□□□□ -0.77
CUX1-221ENST00000622516 ADNPQ9H2P0 1102 aa10.23□□□□□ -0.77
CUX1-221ENST00000622516 DNAJB9Q9UBS3 223 aa10.23□□□□□ -0.77
CUX1-221ENST00000622516 ACSL6Q9UKU0 697 aa10.23□□□□□ -0.77
CUX1-221ENST00000622516 DYRK1BQ9Y463 629 aa10.23□□□□□ -0.77
CUX1-221ENST00000622516 PLXND1Q9Y4D7 1925 aa10.22□□□□□ -0.77
CUX1-221ENST00000622516 PIPSLA2A3N6 862 aa10.22□□□□□ -0.77
CUX1-221ENST00000622516 TMX2-CTNND1H3BSU7 103 aa10.22□□□□□ -0.77
CUX1-221ENST00000622516 SCAMP2O15127 329 aaKnown RBP10.22□□□□□ -0.77
CUX1-221ENST00000622516 PRSS23O95084 383 aa10.22□□□□□ -0.77
CUX1-221ENST00000622516 FKBP9O95302 570 aa10.22□□□□□ -0.77
CUX1-221ENST00000622516 THRBP10828 461 aa10.22□□□□□ -0.77
CUX1-221ENST00000622516 CYP4B1P13584 511 aa10.22□□□□□ -0.77
CUX1-221ENST00000622516 ACPPP15309 386 aa10.22□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 87 ms