RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 RNF165Q6ZSG1 346 aa10.48□□□□□ -0.73
UPF3A-212ENST00000619079 OR52B6Q8NGF0 335 aa10.48□□□□□ -0.73
UPF3A-212ENST00000619079 EDEM1Q92611 657 aa10.48□□□□□ -0.73
UPF3A-212ENST00000619079 AP2M1Q96CW1 435 aa10.48□□□□□ -0.73
UPF3A-212ENST00000619079 TTPALQ9BTX7 342 aa10.48□□□□□ -0.73
UPF3A-212ENST00000619079 C1QTNF7Q9BXJ2 289 aa10.48□□□□□ -0.73
UPF3A-212ENST00000619079 ASPNQ9BXN1 380 aa10.48□□□□□ -0.73
UPF3A-212ENST00000619079 RACGAP1Q9H0H5 632 aa10.48□□□□□ -0.73
UPF3A-212ENST00000619079 LIN7BQ9HAP6 207 aa10.48□□□□□ -0.73
UPF3A-212ENST00000619079 PRDM8Q9NQV8 689 aa10.48□□□□□ -0.73
UPF3A-212ENST00000619079 GPR83Q9NYM4 423 aa10.48□□□□□ -0.73
UPF3A-212ENST00000619079 NUDT4Q9NZJ9 180 aa10.48□□□□□ -0.73
UPF3A-212ENST00000619079 FAM50BQ9Y247 325 aa10.48□□□□□ -0.73
UPF3A-212ENST00000619079 HSPB11Q9Y547 144 aa10.48□□□□□ -0.73
UPF3A-212ENST00000619079 EVPLQ92817 2033 aa10.47□□□□□ -0.73
UPF3A-212ENST00000619079 MEN1O00255 615 aa10.47□□□□□ -0.73
UPF3A-212ENST00000619079 SLC28A1O00337 649 aa10.47□□□□□ -0.73
UPF3A-212ENST00000619079 IFI30P13284 250 aa10.47□□□□□ -0.73
UPF3A-212ENST00000619079 PCSK2P16519 638 aa10.47□□□□□ -0.73
UPF3A-212ENST00000619079 AZGP1P25311 298 aaKnown RBP10.47□□□□□ -0.73
UPF3A-212ENST00000619079 CTAG1AP78358 180 aa10.47□□□□□ -0.73
UPF3A-212ENST00000619079 MAB21L1Q13394 359 aa10.47□□□□□ -0.73
UPF3A-212ENST00000619079 TSTQ16762 297 aaKnown RBP10.47□□□□□ -0.73
UPF3A-212ENST00000619079 GPR153Q6NV75 609 aa10.47□□□□□ -0.73
UPF3A-212ENST00000619079 SERPINA11Q86U17 422 aa10.47□□□□□ -0.73
UPF3A-212ENST00000619079 OSTM1Q86WC4 334 aa10.47□□□□□ -0.73
UPF3A-212ENST00000619079 ATCAYQ86WG3 371 aa10.47□□□□□ -0.73
UPF3A-212ENST00000619079 TRIM48Q8IWZ4 208 aa10.47□□□□□ -0.73
UPF3A-212ENST00000619079 FAM9CQ8IZT9 166 aa10.47□□□□□ -0.73
UPF3A-212ENST00000619079 RTL3Q8N8U3 475 aaKnown RBP10.47□□□□□ -0.73
UPF3A-212ENST00000619079 OR4M1Q8NGD0 313 aa10.47□□□□□ -0.73
UPF3A-212ENST00000619079 BTN2A2Q8WVV5 523 aa10.47□□□□□ -0.73
UPF3A-212ENST00000619079 TMEM40Q8WWA1 233 aa10.47□□□□□ -0.73
UPF3A-212ENST00000619079 COQ8BQ96D53 544 aa10.47□□□□□ -0.73
UPF3A-212ENST00000619079 REPS1Q96D71 796 aa10.47□□□□□ -0.73
UPF3A-212ENST00000619079 MAGEB10Q96LZ2 347 aaPredicted RBP10.47□□□□□ -0.73
UPF3A-212ENST00000619079 HYLS1Q96M11 299 aa10.47□□□□□ -0.73
UPF3A-212ENST00000619079 MYOCQ99972 504 aa10.47□□□□□ -0.73
UPF3A-212ENST00000619079 C11orf54Q9H0W9 315 aaPredicted RBP10.47□□□□□ -0.73
UPF3A-212ENST00000619079 CXCL16Q9H2A7 254 aa10.47□□□□□ -0.73
UPF3A-212ENST00000619079 KCNN2Q9H2S1 579 aa10.47□□□□□ -0.73
UPF3A-212ENST00000619079 NT5MQ9NPB1 228 aa10.47□□□□□ -0.73
UPF3A-212ENST00000619079 ABI2Q9NYB9 513 aaPredicted RBP10.47□□□□□ -0.73
UPF3A-212ENST00000619079 CNOT2Q9NZN8 540 aaKnown RBP10.47□□□□□ -0.73
UPF3A-212ENST00000619079 TNFRSF10DQ9UBN6 386 aa10.47□□□□□ -0.73
UPF3A-212ENST00000619079 ZNF490Q9ULM2 529 aaPredicted RBP10.47□□□□□ -0.73
UPF3A-212ENST00000619079 AUP1Q9Y679 476 aa10.47□□□□□ -0.73
UPF3A-212ENST00000619079 KCNE2Q9Y6J6 123 aa10.47□□□□□ -0.73
UPF3A-212ENST00000619079 LINC00854A0A1B0GVQ3 168 aa10.47□□□□□ -0.73
UPF3A-212ENST00000619079 SLC12A8A0AV02 714 aa10.47□□□□□ -0.73
UPF3A-212ENST00000619079 PLD2O14939 933 aa10.47□□□□□ -0.73
UPF3A-212ENST00000619079 DARSP14868 501 aaKnown RBP10.47□□□□□ -0.73
UPF3A-212ENST00000619079 HLA-DPA1P20036 260 aa10.47□□□□□ -0.73
UPF3A-212ENST00000619079 ALAS2P22557 587 aa10.47□□□□□ -0.73
UPF3A-212ENST00000619079 TALDO1P37837 337 aa10.47□□□□□ -0.73
UPF3A-212ENST00000619079 KCNQ1P51787 676 aa10.47□□□□□ -0.73
UPF3A-212ENST00000619079 MGAT3Q09327 533 aa10.47□□□□□ -0.73
UPF3A-212ENST00000619079 IKZF1Q13422 519 aa10.47□□□□□ -0.73
UPF3A-212ENST00000619079 GTDC1Q4AE62 458 aa10.47□□□□□ -0.73
UPF3A-212ENST00000619079 ZBTB37Q5TC79 503 aa10.47□□□□□ -0.73
UPF3A-212ENST00000619079 MANEALQ5VSG8 457 aa10.47□□□□□ -0.73
UPF3A-212ENST00000619079 MARC1Q5VT66 337 aa10.47□□□□□ -0.73
UPF3A-212ENST00000619079 FAM131AQ6UXB0 335 aa10.47□□□□□ -0.73
UPF3A-212ENST00000619079 CCDC149Q6ZUS6 474 aa10.47□□□□□ -0.73
UPF3A-212ENST00000619079 DCBLD1Q8N8Z6 715 aa10.47□□□□□ -0.73
UPF3A-212ENST00000619079 LPCAT1Q8NF37 534 aa10.47□□□□□ -0.73
UPF3A-212ENST00000619079 OR10Q1Q8NGQ4 319 aa10.47□□□□□ -0.73
UPF3A-212ENST00000619079 LHFPL5Q8TAF8 219 aa10.47□□□□□ -0.73
UPF3A-212ENST00000619079 CDK15Q96Q40 435 aa10.47□□□□□ -0.73
UPF3A-212ENST00000619079 RETREG1Q9H6L5 497 aa10.47□□□□□ -0.73
UPF3A-212ENST00000619079 TIGARQ9NQ88 270 aa10.47□□□□□ -0.73
UPF3A-212ENST00000619079 MRPL39Q9NYK5 338 aaKnown RBP10.47□□□□□ -0.73
UPF3A-212ENST00000619079 ANKRD36A6QL64 1941 aa10.47□□□□□ -0.73
UPF3A-212ENST00000619079 A0A0B4J293 547 aa10.46□□□□□ -0.73
UPF3A-212ENST00000619079 LOC285095A0A1B0GVY8 99 aa10.46□□□□□ -0.73
UPF3A-212ENST00000619079 NBNO60934 754 aa10.46□□□□□ -0.73
UPF3A-212ENST00000619079 RECQL4O94761 1208 aa10.46□□□□□ -0.73
UPF3A-212ENST00000619079 VIPP01282 170 aa10.46□□□□□ -0.73
UPF3A-212ENST00000619079 FGF1P05230 155 aa10.46□□□□□ -0.73
UPF3A-212ENST00000619079 ATXN1LP0C7T5 689 aaKnown RBP10.46□□□□□ -0.73
UPF3A-212ENST00000619079 ACRP10323 421 aa10.46□□□□□ -0.73
UPF3A-212ENST00000619079 CD9P21926 228 aa10.46□□□□□ -0.73
UPF3A-212ENST00000619079 CBLP22681 906 aa10.46□□□□□ -0.73
UPF3A-212ENST00000619079 PTX3P26022 381 aaPredicted RBP10.46□□□□□ -0.73
UPF3A-212ENST00000619079 CD52P31358 61 aa10.46□□□□□ -0.73
UPF3A-212ENST00000619079 RGS19P49795 217 aa10.46□□□□□ -0.73
UPF3A-212ENST00000619079 IL2P60568 153 aa10.46□□□□□ -0.73
UPF3A-212ENST00000619079 VLDLRP98155 873 aa10.46□□□□□ -0.73
UPF3A-212ENST00000619079 NRG1Q02297 640 aaPredicted RBP10.46□□□□□ -0.73
UPF3A-212ENST00000619079 MRPL28Q13084 256 aaKnown RBP10.46□□□□□ -0.73
UPF3A-212ENST00000619079 ABRAXAS2Q15018 415 aa10.46□□□□□ -0.73
UPF3A-212ENST00000619079 PCBP2Q15366 365 aaKnown RBP eCLIP10.46□□□□□ -0.73
UPF3A-212ENST00000619079 MED22Q15528 200 aa10.46□□□□□ -0.73
UPF3A-212ENST00000619079 TATDN3Q17R31 274 aa10.46□□□□□ -0.73
UPF3A-212ENST00000619079 GLYR1Q49A26 553 aaPredicted RBP10.46□□□□□ -0.73
UPF3A-212ENST00000619079 ZMAT1Q5H9K5 638 aa10.46□□□□□ -0.73
UPF3A-212ENST00000619079 FAM26DQ5JW98 314 aa10.46□□□□□ -0.73
UPF3A-212ENST00000619079 LCN1P1Q5VSP4 162 aa10.46□□□□□ -0.73
UPF3A-212ENST00000619079 OR4F3Q6IEY1 312 aa10.46□□□□□ -0.73
UPF3A-212ENST00000619079 MZT2BQ6NZ67 158 aa10.46□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms