RNA–Protein interactions for RNA: ENST00000614678.1

CPNE3-208, Transcript of copine 3, humanhuman

TSL 1 (best)

Gene CPNE3, Length 4,201 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-208ENST00000614678 ATP5DP30049 168 aa5.41□□□□□ -1.54
CPNE3-208ENST00000614678 HNRNPH1P31943 449 aaKnown RBP5.41□□□□□ -1.54
CPNE3-208ENST00000614678 DEFB134Q4QY38 66 aa5.41□□□□□ -1.54
CPNE3-208ENST00000614678 FAM180BQ6P0A1 224 aa5.41□□□□□ -1.54
CPNE3-208ENST00000614678 KIRREL2Q6UWL6 708 aa5.41□□□□□ -1.54
CPNE3-208ENST00000614678 NEK10Q6ZWH5 1172 aa5.41□□□□□ -1.54
CPNE3-208ENST00000614678 PRICKLE2Q7Z3G6 844 aa5.41□□□□□ -1.54
CPNE3-208ENST00000614678 EPS8L3Q8TE67 593 aaKnown RBP5.41□□□□□ -1.54
CPNE3-208ENST00000614678 COL26A1Q96A83 441 aa5.41□□□□□ -1.54
CPNE3-208ENST00000614678 ATOH8Q96SQ7 321 aa5.41□□□□□ -1.54
CPNE3-208ENST00000614678 ARHGAP9Q9BRR9 750 aa5.41□□□□□ -1.54
CPNE3-208ENST00000614678 NDC1Q9BTX1 674 aa5.41□□□□□ -1.54
CPNE3-208ENST00000614678 NLNQ9BYT8 704 aa5.41□□□□□ -1.54
CPNE3-208ENST00000614678 L2HGDHQ9H9P8 463 aa5.41□□□□□ -1.54
CPNE3-208ENST00000614678 ZNF490Q9ULM2 529 aaPredicted RBP5.41□□□□□ -1.54
CPNE3-208ENST00000614678 VPS9D1Q9Y2B5 631 aa5.41□□□□□ -1.54
CPNE3-208ENST00000614678 USP9YO00507 2555 aaPredicted RBP5.41□□□□□ -1.54
CPNE3-208ENST00000614678 A0A096LPK6 155 aa5.41□□□□□ -1.54
CPNE3-208ENST00000614678 MATN2O00339 956 aa5.41□□□□□ -1.54
CPNE3-208ENST00000614678 NDUFS4O43181 175 aa5.41□□□□□ -1.54
CPNE3-208ENST00000614678 RIPK2O43353 540 aa5.41□□□□□ -1.54
CPNE3-208ENST00000614678 CCNT2O60583 730 aaKnown RBP5.41□□□□□ -1.54
CPNE3-208ENST00000614678 GBAP04062 536 aa5.41□□□□□ -1.54
CPNE3-208ENST00000614678 RPN2P04844 631 aa5.41□□□□□ -1.54
CPNE3-208ENST00000614678 KLK3P07288 261 aaPredicted RBP5.41□□□□□ -1.54
CPNE3-208ENST00000614678 ENO3P13929 434 aaPredicted RBP5.41□□□□□ -1.54
CPNE3-208ENST00000614678 CMPK1P30085 196 aa5.41□□□□□ -1.54
CPNE3-208ENST00000614678 PTGER1P34995 402 aa5.41□□□□□ -1.54
CPNE3-208ENST00000614678 CCNFP41002 786 aa5.41□□□□□ -1.54
CPNE3-208ENST00000614678 NEK2P51955 445 aa5.41□□□□□ -1.54
CPNE3-208ENST00000614678 BTG2P78543 158 aa5.41□□□□□ -1.54
CPNE3-208ENST00000614678 DCDP81605 110 aaKnown RBP5.41□□□□□ -1.54
CPNE3-208ENST00000614678 FCRLBQ6BAA4 426 aa5.41□□□□□ -1.54
CPNE3-208ENST00000614678 CAPN13Q6MZZ7 669 aaPredicted RBP5.41□□□□□ -1.54
CPNE3-208ENST00000614678 PARP9Q8IXQ6 854 aa5.41□□□□□ -1.54
CPNE3-208ENST00000614678 LMNTD2Q8IXW0 634 aa5.41□□□□□ -1.54
CPNE3-208ENST00000614678 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP5.41□□□□□ -1.54
CPNE3-208ENST00000614678 STT3BQ8TCJ2 826 aa5.41□□□□□ -1.54
CPNE3-208ENST00000614678 TSLPQ969D9 159 aa5.41□□□□□ -1.54
CPNE3-208ENST00000614678 ZUFSPQ96AP4 578 aa5.41□□□□□ -1.54
CPNE3-208ENST00000614678 KIAA1143Q96AT1 154 aaPredicted RBP5.41□□□□□ -1.54
CPNE3-208ENST00000614678 MTFMTQ96DP5 389 aaKnown RBP5.41□□□□□ -1.54
CPNE3-208ENST00000614678 ZPBPQ9BS86 351 aa5.41□□□□□ -1.54
CPNE3-208ENST00000614678 ACSS3Q9H6R3 686 aa5.41□□□□□ -1.54
CPNE3-208ENST00000614678 TXLNGQ9NUQ3 528 aa5.41□□□□□ -1.54
CPNE3-208ENST00000614678 TRPC4Q9UBN4 977 aa5.41□□□□□ -1.54
CPNE3-208ENST00000614678 HS3ST3B1Q9Y662 390 aa5.41□□□□□ -1.54
CPNE3-208ENST00000614678 COMMD10Q9Y6G5 202 aa5.41□□□□□ -1.54
CPNE3-208ENST00000614678 MED12Q93074 2177 aa5.41□□□□□ -1.54
CPNE3-208ENST00000614678 ZGRF1Q86YA3 2104 aa5.41□□□□□ -1.54
CPNE3-208ENST00000614678 A0A1B0GX78 115 aa5.41□□□□□ -1.54
CPNE3-208ENST00000614678 TRIM49D1C9J1S8 452 aa5.41□□□□□ -1.54
CPNE3-208ENST00000614678 TGFBR3LH3BV60 316 aa5.41□□□□□ -1.54
CPNE3-208ENST00000614678 PFDN6O15212 129 aa5.41□□□□□ -1.54
CPNE3-208ENST00000614678 CD82P27701 267 aa5.41□□□□□ -1.54
CPNE3-208ENST00000614678 RGS4P49798 205 aa5.41□□□□□ -1.54
CPNE3-208ENST00000614678 NR0B1P51843 470 aaKnown RBP5.41□□□□□ -1.54
CPNE3-208ENST00000614678 CDH13P55290 713 aa5.41□□□□□ -1.54
CPNE3-208ENST00000614678 CBLBQ13191 982 aa5.41□□□□□ -1.54
CPNE3-208ENST00000614678 PFKFB4Q16877 469 aa5.41□□□□□ -1.54
CPNE3-208ENST00000614678 ERCC6LQ2NKX8 1250 aa5.41□□□□□ -1.54
CPNE3-208ENST00000614678 TCHHL1Q5QJ38 904 aaPredicted RBP5.41□□□□□ -1.54
CPNE3-208ENST00000614678 B3GNTL1Q67FW5 361 aaPredicted RBP5.41□□□□□ -1.54
CPNE3-208ENST00000614678 ATG14Q6ZNE5 492 aa5.41□□□□□ -1.54
CPNE3-208ENST00000614678 GALNT7Q86SF2 657 aa5.41□□□□□ -1.54
CPNE3-208ENST00000614678 BBOF1Q8ND07 529 aa5.41□□□□□ -1.54
CPNE3-208ENST00000614678 OR52B6Q8NGF0 335 aa5.41□□□□□ -1.54
CPNE3-208ENST00000614678 RHBGQ9H310 441 aa5.41□□□□□ -1.54
CPNE3-208ENST00000614678 ZBTB26Q9HCK0 441 aa5.41□□□□□ -1.54
CPNE3-208ENST00000614678 FAM114A2Q9NRY5 505 aa5.41□□□□□ -1.54
CPNE3-208ENST00000614678 GEMIN8Q9NWZ8 242 aaKnown RBP5.41□□□□□ -1.54
CPNE3-208ENST00000614678 SPATA7Q9P0W8 599 aa5.41□□□□□ -1.54
CPNE3-208ENST00000614678 MAN2B2Q9Y2E5 1009 aa5.41□□□□□ -1.54
CPNE3-208ENST00000614678 NAALAD2Q9Y3Q0 740 aa5.41□□□□□ -1.54
CPNE3-208ENST00000614678 SPTBN1Q01082 2364 aaKnown RBP5.41□□□□□ -1.54
CPNE3-208ENST00000614678 ERVH48-1M5A8F1 160 aa5.4□□□□□ -1.54
CPNE3-208ENST00000614678 SOCS6O14544 535 aa5.4□□□□□ -1.54
CPNE3-208ENST00000614678 RFPL1O75677 317 aa5.4□□□□□ -1.54
CPNE3-208ENST00000614678 ETHE1O95571 254 aa5.4□□□□□ -1.54
CPNE3-208ENST00000614678 C8GP07360 202 aa5.4□□□□□ -1.54
CPNE3-208ENST00000614678 ZNF888P0CJ79 500 aaPredicted RBP5.4□□□□□ -1.54
CPNE3-208ENST00000614678 SLC6A12P48065 614 aa5.4□□□□□ -1.54
CPNE3-208ENST00000614678 POU4F1Q01851 419 aa5.4□□□□□ -1.54
CPNE3-208ENST00000614678 RBBP5Q15291 538 aaKnown RBP5.4□□□□□ -1.54
CPNE3-208ENST00000614678 BORAQ6PGQ7 559 aa5.4□□□□□ -1.54
CPNE3-208ENST00000614678 MRGPREQ86SM8 312 aa5.4□□□□□ -1.54
CPNE3-208ENST00000614678 FBXO15Q8NCQ5 510 aaPredicted RBP5.4□□□□□ -1.54
CPNE3-208ENST00000614678 SLC44A1Q8WWI5 657 aa5.4□□□□□ -1.54
CPNE3-208ENST00000614678 SLC13A3Q8WWT9 602 aa5.4□□□□□ -1.54
CPNE3-208ENST00000614678 C19orf60Q96EN9 201 aa5.4□□□□□ -1.54
CPNE3-208ENST00000614678 PEX11GQ96HA9 241 aa5.4□□□□□ -1.54
CPNE3-208ENST00000614678 FANCEQ9HB96 536 aa5.4□□□□□ -1.54
CPNE3-208ENST00000614678 TNFRSF12AQ9NP84 129 aa5.4□□□□□ -1.54
CPNE3-208ENST00000614678 P4HTMQ9NXG6 502 aa5.4□□□□□ -1.54
CPNE3-208ENST00000614678 TXNDC16Q9P2K2 825 aa5.4□□□□□ -1.54
CPNE3-208ENST00000614678 OARD1Q9Y530 152 aa5.4□□□□□ -1.54
CPNE3-208ENST00000614678 EML6Q6ZMW3 1958 aa5.4□□□□□ -1.54
CPNE3-208ENST00000614678 TACC2O95359 2948 aa5.4□□□□□ -1.54
CPNE3-208ENST00000614678 DIDO1Q9BTC0 2240 aaKnown RBP5.4□□□□□ -1.54
CPNE3-208ENST00000614678 FITM1A5D6W6 292 aa5.4□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms