RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 ANXA8L1Q5VT79 327 aa12.19□□□□□ -0.46
LIG1-221ENST00000613670 LYPLAL1Q5VWZ2 237 aa12.19□□□□□ -0.46
LIG1-221ENST00000613670 LIMS2Q7Z4I7 341 aa12.19□□□□□ -0.46
LIG1-221ENST00000613670 TRAPPC5Q8IUR0 188 aa12.19□□□□□ -0.46
LIG1-221ENST00000613670 BEND7Q8N7W2 519 aaPredicted RBP12.19□□□□□ -0.46
LIG1-221ENST00000613670 AQP11Q8NBQ7 271 aa12.19□□□□□ -0.46
LIG1-221ENST00000613670 PIK3R3Q92569 461 aa12.19□□□□□ -0.46
LIG1-221ENST00000613670 PHOX2BQ99453 314 aa12.19□□□□□ -0.46
LIG1-221ENST00000613670 NLNQ9BYT8 704 aa12.19□□□□□ -0.46
LIG1-221ENST00000613670 SLC29A3Q9BZD2 475 aa12.19□□□□□ -0.46
LIG1-221ENST00000613670 ACTL8Q9H568 366 aa12.19□□□□□ -0.46
LIG1-221ENST00000613670 CLMPQ9H6B4 373 aa12.19□□□□□ -0.46
LIG1-221ENST00000613670 IL26Q9NPH9 171 aa12.19□□□□□ -0.46
LIG1-221ENST00000613670 PCDHGB6Q9Y5F9 930 aa12.19□□□□□ -0.46
LIG1-221ENST00000613670 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP12.19□□□□□ -0.46
LIG1-221ENST00000613670 UPK1AO00322 258 aa12.19□□□□□ -0.46
LIG1-221ENST00000613670 COCHO43405 550 aa12.19□□□□□ -0.46
LIG1-221ENST00000613670 TGFB1P01137 390 aa12.19□□□□□ -0.46
LIG1-221ENST00000613670 PAX3P23760 479 aa12.19□□□□□ -0.46
LIG1-221ENST00000613670 TIE1P35590 1138 aa12.19□□□□□ -0.46
LIG1-221ENST00000613670 HNF1BP35680 557 aa12.19□□□□□ -0.46
LIG1-221ENST00000613670 FLT3LGP49771 235 aa12.19□□□□□ -0.46
LIG1-221ENST00000613670 AP1S1P61966 158 aa12.19□□□□□ -0.46
LIG1-221ENST00000613670 SLC16A12Q6ZSM3 486 aa12.19□□□□□ -0.46
LIG1-221ENST00000613670 SERINC5Q86VE9 423 aa12.19□□□□□ -0.46
LIG1-221ENST00000613670 CELF2-AS1Q8N7Q2 184 aa12.19□□□□□ -0.46
LIG1-221ENST00000613670 OR9Q2Q8NGE9 314 aa12.19□□□□□ -0.46
LIG1-221ENST00000613670 SOCS4Q8WXH5 440 aa12.19□□□□□ -0.46
LIG1-221ENST00000613670 ZNF486Q96H40 463 aaPredicted RBP12.19□□□□□ -0.46
LIG1-221ENST00000613670 TMEM246Q9BRR3 403 aa12.19□□□□□ -0.46
LIG1-221ENST00000613670 ASPNQ9BXN1 380 aa12.19□□□□□ -0.46
LIG1-221ENST00000613670 TMEM245Q9H330 911 aa12.19□□□□□ -0.46
LIG1-221ENST00000613670 TVP23BQ9NYZ1 205 aa12.19□□□□□ -0.46
LIG1-221ENST00000613670 ANGPT4Q9Y264 503 aa12.19□□□□□ -0.46
LIG1-221ENST00000613670 SSC5DA1L4H1 1573 aa12.19□□□□□ -0.46
LIG1-221ENST00000613670 ISPDA4D126 451 aa12.19□□□□□ -0.46
LIG1-221ENST00000613670 SYN3O14994 580 aa12.19□□□□□ -0.46
LIG1-221ENST00000613670 IFNW1P05000 195 aa12.19□□□□□ -0.46
LIG1-221ENST00000613670 PPIBP23284 216 aaKnown RBP12.19□□□□□ -0.46
LIG1-221ENST00000613670 ZNF45Q02386 682 aa12.19□□□□□ -0.46
LIG1-221ENST00000613670 PPIGQ13427 754 aaKnown RBP eCLIP12.19□□□□□ -0.463e-7■■■□□ 16.7
LIG1-221ENST00000613670 ZNF181Q2M3W8 571 aa12.19□□□□□ -0.46
LIG1-221ENST00000613670 DPY19L1Q2PZI1 675 aa12.19□□□□□ -0.46
LIG1-221ENST00000613670 TBRG1Q3YBR2 411 aa12.19□□□□□ -0.46
LIG1-221ENST00000613670 NEK10Q6ZWH5 1172 aa12.19□□□□□ -0.46
LIG1-221ENST00000613670 NXPE1Q8N323 547 aa12.19□□□□□ -0.46
LIG1-221ENST00000613670 PCSK9Q8NBP7 692 aaKnown RBP12.19□□□□□ -0.46
LIG1-221ENST00000613670 FBXO22Q8NEZ5 403 aa12.19□□□□□ -0.46
LIG1-221ENST00000613670 CMTM7Q96FZ5 175 aa12.19□□□□□ -0.46
LIG1-221ENST00000613670 COMMD3Q9UBI1 195 aa12.19□□□□□ -0.46
LIG1-221ENST00000613670 ENOPH1Q9UHY7 261 aa12.19□□□□□ -0.46
LIG1-221ENST00000613670 LYVE1Q9Y5Y7 322 aa12.19□□□□□ -0.46
LIG1-221ENST00000613670 DNMT3AQ9Y6K1 912 aaPredicted RBP12.19□□□□□ -0.46
LIG1-221ENST00000613670 FABP12A6NFH5 140 aa12.18□□□□□ -0.46
LIG1-221ENST00000613670 DRGXA6NNA5 263 aa12.18□□□□□ -0.46
LIG1-221ENST00000613670 AXIN1O15169 862 aa12.18□□□□□ -0.46
LIG1-221ENST00000613670 PSIP1O75475 530 aaKnown RBP12.18□□□□□ -0.46
LIG1-221ENST00000613670 HTR1AP08908 422 aa12.18□□□□□ -0.46
LIG1-221ENST00000613670 ETFAP13804 333 aa12.18□□□□□ -0.46
LIG1-221ENST00000613670 MASP1P48740 699 aa12.18□□□□□ -0.46
LIG1-221ENST00000613670 CLCN7P51798 805 aa12.18□□□□□ -0.46
LIG1-221ENST00000613670 CCL23P55773 120 aa12.18□□□□□ -0.46
LIG1-221ENST00000613670 SLC35A2P78381 396 aa12.18□□□□□ -0.46
LIG1-221ENST00000613670 SCN1BQ07699 218 aa12.18□□□□□ -0.46
LIG1-221ENST00000613670 SCARB2Q14108 478 aa12.18□□□□□ -0.46
LIG1-221ENST00000613670 EXOC3L2Q2M3D2 409 aa12.18□□□□□ -0.46
LIG1-221ENST00000613670 USP30Q70CQ3 517 aa12.18□□□□□ -0.46
LIG1-221ENST00000613670 ZSWIM9Q86XI8 627 aa12.18□□□□□ -0.46
LIG1-221ENST00000613670 PARP16Q8N5Y8 322 aa12.18□□□□□ -0.46
LIG1-221ENST00000613670 ASZ1Q8WWH4 475 aa12.18□□□□□ -0.46
LIG1-221ENST00000613670 TMCO6Q96DC7 493 aa12.18□□□□□ -0.46
LIG1-221ENST00000613670 OMA1Q96E52 524 aa12.18□□□□□ -0.46
LIG1-221ENST00000613670 CPPED1Q9BRF8 314 aaPredicted RBP12.18□□□□□ -0.46
LIG1-221ENST00000613670 SLC35A5Q9BS91 424 aa12.18□□□□□ -0.46
LIG1-221ENST00000613670 PAQR5Q9NXK6 330 aaPredicted RBP12.18□□□□□ -0.46
LIG1-221ENST00000613670 H2AFY2Q9P0M6 372 aaPredicted RBP12.18□□□□□ -0.46
LIG1-221ENST00000613670 CORO2BQ9UQ03 480 aa12.18□□□□□ -0.46
LIG1-221ENST00000613670 LTBP4Q8N2S1 1624 aa12.18□□□□□ -0.46
LIG1-221ENST00000613670 NUAK1O60285 661 aa12.18□□□□□ -0.46
LIG1-221ENST00000613670 PCDHGA12O60330 932 aa12.18□□□□□ -0.46
LIG1-221ENST00000613670 FEN1P39748 380 aaKnown RBP12.18□□□□□ -0.46
LIG1-221ENST00000613670 TIAL1Q01085 375 aaKnown RBP eCLIP12.18□□□□□ -0.46
LIG1-221ENST00000613670 KRT33BQ14525 404 aa12.18□□□□□ -0.46
LIG1-221ENST00000613670 AFMIDQ63HM1 303 aa12.18□□□□□ -0.46
LIG1-221ENST00000613670 NLGN4XQ8N0W4 816 aa12.18□□□□□ -0.46
LIG1-221ENST00000613670 ELMOD1Q8N336 334 aa12.18□□□□□ -0.46
LIG1-221ENST00000613670 METTL4Q8N3J2 472 aa12.18□□□□□ -0.46
LIG1-221ENST00000613670 C17orf50Q8WW18 174 aa12.18□□□□□ -0.46
LIG1-221ENST00000613670 TRIM63Q969Q1 353 aa12.18□□□□□ -0.46
LIG1-221ENST00000613670 STARD7Q9NQZ5 370 aa12.18□□□□□ -0.46
LIG1-221ENST00000613670 HCSTQ9UBK5 93 aa12.18□□□□□ -0.46
LIG1-221ENST00000613670 SLCO3A1Q9UIG8 710 aa12.18□□□□□ -0.46
LIG1-221ENST00000613670 MKLN1Q9UL63 735 aa12.18□□□□□ -0.46
LIG1-221ENST00000613670 FAM240BA0A1B0GVZ2 78 aa12.18□□□□□ -0.46
LIG1-221ENST00000613670 GRXCR2A6NFK2 248 aa12.18□□□□□ -0.46
LIG1-221ENST00000613670 NOTOA8MTQ0 251 aa12.18□□□□□ -0.46
LIG1-221ENST00000613670 SLC16A6O15403 523 aa12.18□□□□□ -0.46
LIG1-221ENST00000613670 PCDH7O60245 1069 aa12.18□□□□□ -0.46
LIG1-221ENST00000613670 CPNE3O75131 537 aaKnown RBP12.18□□□□□ -0.46
LIG1-221ENST00000613670 TSPAN12O95859 305 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms