RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 EMP3P54852 163 aa15.78■□□□□ 0.12
CCDC28A-202ENST00000611852 BROXQ5VW32 411 aa15.78■□□□□ 0.12
CCDC28A-202ENST00000611852 LCN10Q6JVE6 187 aa15.78■□□□□ 0.12
CCDC28A-202ENST00000611852 TTLL10Q6ZVT0 673 aa15.78■□□□□ 0.12
CCDC28A-202ENST00000611852 TRABD2AQ86V40 505 aa15.78■□□□□ 0.12
CCDC28A-202ENST00000611852 C4orf33Q8N1A6 199 aa15.78■□□□□ 0.12
CCDC28A-202ENST00000611852 ARHGEF39Q8N4T4 335 aa15.78■□□□□ 0.12
CCDC28A-202ENST00000611852 PROKR1Q8TCW9 393 aa15.78■□□□□ 0.12
CCDC28A-202ENST00000611852 HNRNPLLQ8WVV9 542 aaKnown RBP15.78■□□□□ 0.12
CCDC28A-202ENST00000611852 MR1Q95460 341 aa15.78■□□□□ 0.12
CCDC28A-202ENST00000611852 TM4SF19Q96DZ7 209 aa15.78■□□□□ 0.12
CCDC28A-202ENST00000611852 DPH2Q9BQC3 489 aaPredicted RBP15.78■□□□□ 0.12
CCDC28A-202ENST00000611852 AIF1LQ9BQI0 150 aa15.78■□□□□ 0.12
CCDC28A-202ENST00000611852 TXLNGQ9NUQ3 528 aa15.78■□□□□ 0.12
CCDC28A-202ENST00000611852 GEMIN8Q9NWZ8 242 aaKnown RBP15.78■□□□□ 0.12
CCDC28A-202ENST00000611852 RUVBL1Q9Y265 456 aaKnown RBP15.78■□□□□ 0.12
CCDC28A-202ENST00000611852 A0A1B0GX78 115 aa15.78■□□□□ 0.12
CCDC28A-202ENST00000611852 E2F3O00716 465 aa15.78■□□□□ 0.12
CCDC28A-202ENST00000611852 TXNDC9O14530 226 aa15.78■□□□□ 0.12
CCDC28A-202ENST00000611852 DSCR3O14972 297 aa15.78■□□□□ 0.12
CCDC28A-202ENST00000611852 EFSO43281 561 aa15.78■□□□□ 0.12
CCDC28A-202ENST00000611852 MED26O95402 600 aa15.78■□□□□ 0.12
CCDC28A-202ENST00000611852 STATHP02808 62 aa15.78■□□□□ 0.12
CCDC28A-202ENST00000611852 LIFP15018 202 aa15.78■□□□□ 0.12
CCDC28A-202ENST00000611852 EPB42P16452 691 aa15.78■□□□□ 0.12
CCDC28A-202ENST00000611852 TCN2P20062 427 aa15.78■□□□□ 0.12
CCDC28A-202ENST00000611852 ALAS2P22557 587 aa15.78■□□□□ 0.12
CCDC28A-202ENST00000611852 CRHR1P34998 444 aa15.78■□□□□ 0.12
CCDC28A-202ENST00000611852 DLSTP36957 453 aa15.78■□□□□ 0.12
CCDC28A-202ENST00000611852 SCTRP47872 440 aa15.78■□□□□ 0.12
CCDC28A-202ENST00000611852 SLC18A2Q05940 514 aa15.78■□□□□ 0.12
CCDC28A-202ENST00000611852 PCDH1Q08174 1060 aa15.78■□□□□ 0.12
CCDC28A-202ENST00000611852 KRT71Q3SY84 523 aa15.78■□□□□ 0.12
CCDC28A-202ENST00000611852 C1orf189Q5VU69 101 aa15.78■□□□□ 0.12
CCDC28A-202ENST00000611852 METTL2BQ6P1Q9 378 aaKnown RBP15.78■□□□□ 0.12
CCDC28A-202ENST00000611852 TBC1D19Q8N5T2 526 aa15.78■□□□□ 0.12
CCDC28A-202ENST00000611852 TEX9Q8N6V9 391 aa15.78■□□□□ 0.12
CCDC28A-202ENST00000611852 ANKRD53Q8N9V6 530 aa15.78■□□□□ 0.12
CCDC28A-202ENST00000611852 CT55Q8WUE5 264 aa15.78■□□□□ 0.12
CCDC28A-202ENST00000611852 KIAA1143Q96AT1 154 aaPredicted RBP15.78■□□□□ 0.12
CCDC28A-202ENST00000611852 WDR34Q96EX3 536 aa15.78■□□□□ 0.12
CCDC28A-202ENST00000611852 C10orf90Q96M02 699 aa15.78■□□□□ 0.12
CCDC28A-202ENST00000611852 ZIM3Q96PE6 472 aa15.78■□□□□ 0.12
CCDC28A-202ENST00000611852 CHST8Q9H2A9 424 aa15.78■□□□□ 0.12
CCDC28A-202ENST00000611852 GPN2Q9H9Y4 310 aaPredicted RBP15.78■□□□□ 0.12
CCDC28A-202ENST00000611852 CROTQ9UKG9 612 aa15.78■□□□□ 0.12
CCDC28A-202ENST00000611852 EMCNQ9ULC0 261 aa15.78■□□□□ 0.12
CCDC28A-202ENST00000611852 PTPRQQ9UMZ3 2332 aa15.77■□□□□ 0.12
CCDC28A-202ENST00000611852 A8MT66 165 aa15.77■□□□□ 0.11
CCDC28A-202ENST00000611852 COPEO14579 308 aa15.77■□□□□ 0.11
CCDC28A-202ENST00000611852 H2AFYO75367 372 aaKnown RBP15.77■□□□□ 0.11
CCDC28A-202ENST00000611852 WFS1O76024 890 aa15.77■□□□□ 0.11
CCDC28A-202ENST00000611852 WT1P19544 449 aaPredicted RBP15.77■□□□□ 0.11
CCDC28A-202ENST00000611852 CD22P20273 847 aa15.77■□□□□ 0.11
CCDC28A-202ENST00000611852 TAC1P20366 129 aa15.77■□□□□ 0.11
CCDC28A-202ENST00000611852 F8A1P23610 371 aa15.77■□□□□ 0.11
CCDC28A-202ENST00000611852 CXCR2P25025 360 aa15.77■□□□□ 0.11
CCDC28A-202ENST00000611852 EEF1DP29692 281 aaKnown RBP15.77■□□□□ 0.11
CCDC28A-202ENST00000611852 DCDP81605 110 aaKnown RBP15.77■□□□□ 0.11
CCDC28A-202ENST00000611852 CHIT1Q13231 466 aa15.77■□□□□ 0.11
CCDC28A-202ENST00000611852 DOC2AQ14183 400 aa15.77■□□□□ 0.11
CCDC28A-202ENST00000611852 E2F2Q14209 437 aa15.77■□□□□ 0.11
CCDC28A-202ENST00000611852 SLBPQ14493 270 aaKnown RBP eCLIP15.77■□□□□ 0.11
CCDC28A-202ENST00000611852 TBCCQ15814 346 aa15.77■□□□□ 0.11
CCDC28A-202ENST00000611852 MUM1Q2TAK8 710 aa15.77■□□□□ 0.11
CCDC28A-202ENST00000611852 XKR6Q5GH73 641 aa15.77■□□□□ 0.11
CCDC28A-202ENST00000611852 GARNL3Q5VVW2 1013 aa15.77■□□□□ 0.11
CCDC28A-202ENST00000611852 ASPGQ86U10 573 aa15.77■□□□□ 0.11
CCDC28A-202ENST00000611852 SRRM1Q8IYB3 904 aaKnown RBP15.77■□□□□ 0.11
CCDC28A-202ENST00000611852 DTWD1Q8N5C7 304 aa15.77■□□□□ 0.11
CCDC28A-202ENST00000611852 SLC13A3Q8WWT9 602 aa15.77■□□□□ 0.11
CCDC28A-202ENST00000611852 PTCD3Q96EY7 689 aaKnown RBP15.77■□□□□ 0.11
CCDC28A-202ENST00000611852 MACROD1Q9BQ69 325 aa15.77■□□□□ 0.11
CCDC28A-202ENST00000611852 NLNQ9BYT8 704 aa15.77■□□□□ 0.11
CCDC28A-202ENST00000611852 COPG2Q9UBF2 871 aa15.77■□□□□ 0.11
CCDC28A-202ENST00000611852 NDOR1Q9UHB4 597 aa15.77■□□□□ 0.11
CCDC28A-202ENST00000611852 IL17BQ9UHF5 180 aa15.77■□□□□ 0.11
CCDC28A-202ENST00000611852 ZFP69BQ9UJL9 534 aa15.77■□□□□ 0.11
CCDC28A-202ENST00000611852 GRID1Q9ULK0 1009 aa15.77■□□□□ 0.11
CCDC28A-202ENST00000611852 ANGPTL3Q9Y5C1 460 aa15.77■□□□□ 0.11
CCDC28A-202ENST00000611852 CFAP47Q6ZTR5 3102 aa15.76■□□□□ 0.11
CCDC28A-202ENST00000611852 C21orf140B9A014 251 aa15.76■□□□□ 0.11
CCDC28A-202ENST00000611852 DLX3O60479 287 aa15.76■□□□□ 0.11
CCDC28A-202ENST00000611852 CAPN1P07384 714 aa15.76■□□□□ 0.11
CCDC28A-202ENST00000611852 SLC35G6P0C7Q6 338 aa15.76■□□□□ 0.11
CCDC28A-202ENST00000611852 ITGAXP20702 1163 aa15.76■□□□□ 0.11
CCDC28A-202ENST00000611852 AGXTP21549 392 aa15.76■□□□□ 0.11
CCDC28A-202ENST00000611852 AHRP35869 848 aa15.76■□□□□ 0.11
CCDC28A-202ENST00000611852 CASP2P42575 452 aa15.76■□□□□ 0.11
CCDC28A-202ENST00000611852 UCNP55089 124 aa15.76■□□□□ 0.11
CCDC28A-202ENST00000611852 NFKB2Q00653 900 aa15.76■□□□□ 0.11
CCDC28A-202ENST00000611852 IRF8Q02556 426 aa15.76■□□□□ 0.11
CCDC28A-202ENST00000611852 DNASE1L3Q13609 305 aa15.76■□□□□ 0.11
CCDC28A-202ENST00000611852 GTF2H2Q13888 395 aa15.76■□□□□ 0.11
CCDC28A-202ENST00000611852 RBBP5Q15291 538 aaKnown RBP15.76■□□□□ 0.11
CCDC28A-202ENST00000611852 CEP85LQ5SZL2 805 aa15.76■□□□□ 0.11
CCDC28A-202ENST00000611852 GTF2H2CQ6P1K8 395 aa15.76■□□□□ 0.11
CCDC28A-202ENST00000611852 FAM198BQ6UWH4 519 aa15.76■□□□□ 0.11
CCDC28A-202ENST00000611852 TMIGD1Q6UXZ0 262 aa15.76■□□□□ 0.11
CCDC28A-202ENST00000611852 KRT78Q8N1N4 520 aa15.76■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms