RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 ADNP2Q6IQ32 1131 aa13.54□□□□□ -0.24
SHKBP1-217ENST00000598558 KLC3Q6P597 504 aa13.54□□□□□ -0.24
SHKBP1-217ENST00000598558 RPS27LQ71UM5 84 aaKnown RBP13.54□□□□□ -0.24
SHKBP1-217ENST00000598558 PRSS41Q7RTY9 318 aa13.54□□□□□ -0.24
SHKBP1-217ENST00000598558 PTGR2Q8N8N7 351 aaPredicted RBP13.54□□□□□ -0.24
SHKBP1-217ENST00000598558 SNX31Q8N9S9 440 aa13.54□□□□□ -0.24
SHKBP1-217ENST00000598558 KCT2Q8NC54 265 aa13.54□□□□□ -0.24
SHKBP1-217ENST00000598558 ACMSDQ8TDX5 336 aa13.54□□□□□ -0.24
SHKBP1-217ENST00000598558 SNRNP27Q8WVK2 155 aaKnown RBP13.54□□□□□ -0.24
SHKBP1-217ENST00000598558 PHF21BQ96EK2 531 aa13.54□□□□□ -0.24
SHKBP1-217ENST00000598558 SLC45A3Q96JT2 553 aa13.54□□□□□ -0.24
SHKBP1-217ENST00000598558 PLAAQ9Y263 795 aa13.54□□□□□ -0.24
SHKBP1-217ENST00000598558 PKD1L2Q7Z442 2459 aa13.54□□□□□ -0.24
SHKBP1-217ENST00000598558 KMT2BQ9UMN6 2715 aaPredicted RBP13.54□□□□□ -0.24
SHKBP1-217ENST00000598558 SPTBP11277 2137 aa13.54□□□□□ -0.24
SHKBP1-217ENST00000598558 SYCE1LA8MT33 242 aa13.53□□□□□ -0.24
SHKBP1-217ENST00000598558 K7EPI3 171 aa13.53□□□□□ -0.24
SHKBP1-217ENST00000598558 DSCR3O14972 297 aa13.53□□□□□ -0.24
SHKBP1-217ENST00000598558 DNAJB6O75190 326 aa13.53□□□□□ -0.24
SHKBP1-217ENST00000598558 IPO13O94829 963 aaKnown RBP13.53□□□□□ -0.24
SHKBP1-217ENST00000598558 ONECUT2O95948 504 aa13.53□□□□□ -0.24
SHKBP1-217ENST00000598558 B3GALT4O96024 378 aa13.53□□□□□ -0.24
SHKBP1-217ENST00000598558 S100BP04271 92 aaPredicted RBP13.53□□□□□ -0.24
SHKBP1-217ENST00000598558 KLK3P07288 261 aaPredicted RBP13.53□□□□□ -0.24
SHKBP1-217ENST00000598558 HBQ1P09105 142 aa13.53□□□□□ -0.24
SHKBP1-217ENST00000598558 GFAPP14136 432 aa13.53□□□□□ -0.24
SHKBP1-217ENST00000598558 GNAZP19086 355 aa13.53□□□□□ -0.24
SHKBP1-217ENST00000598558 ARSFP54793 590 aa13.53□□□□□ -0.24
SHKBP1-217ENST00000598558 ALDH18A1P54886 795 aaKnown RBP13.53□□□□□ -0.24
SHKBP1-217ENST00000598558 TMPRSS3P57727 454 aa13.53□□□□□ -0.24
SHKBP1-217ENST00000598558 DCDP81605 110 aaKnown RBP13.53□□□□□ -0.24
SHKBP1-217ENST00000598558 HYAL2Q12891 473 aa13.53□□□□□ -0.24
SHKBP1-217ENST00000598558 SLBPQ14493 270 aaKnown RBP eCLIP13.53□□□□□ -0.24
SHKBP1-217ENST00000598558 PCBP2Q15366 365 aaKnown RBP eCLIP13.53□□□□□ -0.24
SHKBP1-217ENST00000598558 PDK4Q16654 411 aa13.53□□□□□ -0.24
SHKBP1-217ENST00000598558 TSNAXIP1Q2TAA8 658 aa13.53□□□□□ -0.24
SHKBP1-217ENST00000598558 BROXQ5VW32 411 aa13.53□□□□□ -0.24
SHKBP1-217ENST00000598558 ATG9BQ674R7 924 aa13.53□□□□□ -0.24
SHKBP1-217ENST00000598558 VN1R5Q7Z5H4 357 aa13.53□□□□□ -0.24
SHKBP1-217ENST00000598558 IQCKQ8N0W5 287 aa13.53□□□□□ -0.24
SHKBP1-217ENST00000598558 TEX9Q8N6V9 391 aa13.53□□□□□ -0.24
SHKBP1-217ENST00000598558 ENDOVQ8N8Q3 282 aaKnown RBP13.53□□□□□ -0.24
SHKBP1-217ENST00000598558 TTC29Q8NA56 475 aaPredicted RBP13.53□□□□□ -0.24
SHKBP1-217ENST00000598558 CREB3L4Q8TEY5 395 aa13.53□□□□□ -0.24
SHKBP1-217ENST00000598558 THAP11Q96EK4 314 aa13.53□□□□□ -0.24
SHKBP1-217ENST00000598558 WDR34Q96EX3 536 aa13.53□□□□□ -0.24
SHKBP1-217ENST00000598558 CABS1Q96KC9 395 aa13.53□□□□□ -0.24
SHKBP1-217ENST00000598558 NSUN5Q96P11 429 aaKnown RBP13.53□□□□□ -0.24
SHKBP1-217ENST00000598558 MRPL57Q9BQC6 102 aaKnown RBP13.53□□□□□ -0.24
SHKBP1-217ENST00000598558 SLC7A5P2Q9GIP4 190 aa13.53□□□□□ -0.24
SHKBP1-217ENST00000598558 MRPL46Q9H2W6 279 aaKnown RBP13.53□□□□□ -0.24
SHKBP1-217ENST00000598558 CNOT10Q9H9A5 744 aaKnown RBP13.53□□□□□ -0.24
SHKBP1-217ENST00000598558 GPRC5BQ9NZH0 403 aa13.53□□□□□ -0.24
SHKBP1-217ENST00000598558 NDOR1Q9UHB4 597 aa13.53□□□□□ -0.24
SHKBP1-217ENST00000598558 SRPK3Q9UPE1 567 aa13.53□□□□□ -0.24
SHKBP1-217ENST00000598558 FARSAQ9Y285 508 aaKnown RBP13.53□□□□□ -0.24
SHKBP1-217ENST00000598558 PCDHGA6Q9Y5G7 932 aa13.53□□□□□ -0.24
SHKBP1-217ENST00000598558 MAU2Q9Y6X3 613 aa13.53□□□□□ -0.24
SHKBP1-217ENST00000598558 CFAP47Q6ZTR5 3102 aa13.52□□□□□ -0.24
SHKBP1-217ENST00000598558 A0A1B0GTL3 188 aa13.52□□□□□ -0.25
SHKBP1-217ENST00000598558 A0A1B0GX78 115 aa13.52□□□□□ -0.25
SHKBP1-217ENST00000598558 A8MT66 165 aa13.52□□□□□ -0.25
SHKBP1-217ENST00000598558 C4orf51C9J302 202 aa13.52□□□□□ -0.25
SHKBP1-217ENST00000598558 E2F3O00716 465 aa13.52□□□□□ -0.25
SHKBP1-217ENST00000598558 PPP6CO00743 305 aa13.52□□□□□ -0.25
SHKBP1-217ENST00000598558 FFAR3O14843 346 aa13.52□□□□□ -0.25
SHKBP1-217ENST00000598558 GPR42O15529 346 aa13.52□□□□□ -0.25
SHKBP1-217ENST00000598558 DLX3O60479 287 aa13.52□□□□□ -0.25
SHKBP1-217ENST00000598558 CDH16O75309 829 aa13.52□□□□□ -0.25
SHKBP1-217ENST00000598558 KLF7O75840 302 aaPredicted RBP13.52□□□□□ -0.25
SHKBP1-217ENST00000598558 WFS1O76024 890 aa13.52□□□□□ -0.25
SHKBP1-217ENST00000598558 CREB1P16220 341 aa13.52□□□□□ -0.25
SHKBP1-217ENST00000598558 KRT15P19012 456 aa13.52□□□□□ -0.25
SHKBP1-217ENST00000598558 PTPN4P29074 926 aa13.52□□□□□ -0.25
SHKBP1-217ENST00000598558 EEF1DP29692 281 aaKnown RBP13.52□□□□□ -0.25
SHKBP1-217ENST00000598558 CASP2P42575 452 aa13.52□□□□□ -0.25
SHKBP1-217ENST00000598558 SLC18A2Q05940 514 aa13.52□□□□□ -0.25
SHKBP1-217ENST00000598558 ZNF844Q08AG5 666 aa13.52□□□□□ -0.25
SHKBP1-217ENST00000598558 CHIT1Q13231 466 aa13.52□□□□□ -0.25
SHKBP1-217ENST00000598558 E2F2Q14209 437 aa13.52□□□□□ -0.25
SHKBP1-217ENST00000598558 RBBP5Q15291 538 aaKnown RBP13.52□□□□□ -0.25
SHKBP1-217ENST00000598558 FAM214AQ32MH5 1076 aa13.52□□□□□ -0.25
SHKBP1-217ENST00000598558 XKR6Q5GH73 641 aa13.52□□□□□ -0.25
SHKBP1-217ENST00000598558 MLIPQ5VWP3 458 aa13.52□□□□□ -0.25
SHKBP1-217ENST00000598558 MRPL14Q6P1L8 145 aaKnown RBP13.52□□□□□ -0.25
SHKBP1-217ENST00000598558 LRRC70Q7Z2Q7 622 aa13.52□□□□□ -0.25
SHKBP1-217ENST00000598558 ASPGQ86U10 573 aa13.52□□□□□ -0.25
SHKBP1-217ENST00000598558 C4orf33Q8N1A6 199 aa13.52□□□□□ -0.25
SHKBP1-217ENST00000598558 PROKR1Q8TCW9 393 aa13.52□□□□□ -0.25
SHKBP1-217ENST00000598558 SLC13A3Q8WWT9 602 aa13.52□□□□□ -0.25
SHKBP1-217ENST00000598558 STARD8Q92502 1023 aa13.52□□□□□ -0.25
SHKBP1-217ENST00000598558 RERGQ96A58 199 aaPredicted RBP13.52□□□□□ -0.25
SHKBP1-217ENST00000598558 TMEM109Q9BVC6 243 aa13.52□□□□□ -0.25
SHKBP1-217ENST00000598558 NLNQ9BYT8 704 aa13.52□□□□□ -0.25
SHKBP1-217ENST00000598558 KLHL31Q9H511 634 aa13.52□□□□□ -0.25
SHKBP1-217ENST00000598558 ACTL8Q9H568 366 aa13.52□□□□□ -0.25
SHKBP1-217ENST00000598558 PPCSQ9HAB8 311 aa13.52□□□□□ -0.25
SHKBP1-217ENST00000598558 ZBTB26Q9HCK0 441 aa13.52□□□□□ -0.25
SHKBP1-217ENST00000598558 TXLNGQ9NUQ3 528 aa13.52□□□□□ -0.25
SHKBP1-217ENST00000598558 COPG2Q9UBF2 871 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms