RNA–Protein interactions for RNA: ENST00000598201.5

SHKBP1-216, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 2,069 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-216ENST00000598201 SPIN4Q56A73 249 aa16.39■□□□□ 0.21
SHKBP1-216ENST00000598201 TMEM31Q5JXX7 168 aa16.39■□□□□ 0.21
SHKBP1-216ENST00000598201 GCNT7Q6ZNI0 430 aa16.39■□□□□ 0.21
SHKBP1-216ENST00000598201 VN1R5Q7Z5H4 357 aa16.39■□□□□ 0.21
SHKBP1-216ENST00000598201 FAM129CQ86XR2 697 aa16.39■□□□□ 0.21
SHKBP1-216ENST00000598201 TRPV3Q8NET8 790 aa16.39■□□□□ 0.21
SHKBP1-216ENST00000598201 FAM3CQ92520 227 aa16.39■□□□□ 0.21
SHKBP1-216ENST00000598201 C12orf66Q96MD2 445 aa16.39■□□□□ 0.21
SHKBP1-216ENST00000598201 NSMCE2Q96MF7 247 aa16.39■□□□□ 0.21
SHKBP1-216ENST00000598201 SLC29A1Q99808 456 aa16.39■□□□□ 0.21
SHKBP1-216ENST00000598201 CIB1Q99828 191 aa16.39■□□□□ 0.21
SHKBP1-216ENST00000598201 TIMM29Q9BSF4 260 aa16.39■□□□□ 0.21
SHKBP1-216ENST00000598201 KAT8Q9H7Z6 458 aaKnown RBP16.39■□□□□ 0.21
SHKBP1-216ENST00000598201 AGPAT4Q9NRZ5 378 aa16.39■□□□□ 0.21
SHKBP1-216ENST00000598201 FZD4Q9ULV1 537 aa16.39■□□□□ 0.21
SHKBP1-216ENST00000598201 CA5BQ9Y2D0 317 aa16.39■□□□□ 0.21
SHKBP1-216ENST00000598201 A0A1W2PPV9 198 aa16.38■□□□□ 0.21
SHKBP1-216ENST00000598201 PRR19A6NJB7 356 aa16.38■□□□□ 0.21
SHKBP1-216ENST00000598201 MAN2B1O00754 1011 aa16.38■□□□□ 0.21
SHKBP1-216ENST00000598201 TXNDC9O14530 226 aa16.38■□□□□ 0.21
SHKBP1-216ENST00000598201 HNRNPRO43390 633 aaKnown RBP16.38■□□□□ 0.21
SHKBP1-216ENST00000598201 SLC34A2O95436 690 aa16.38■□□□□ 0.21
SHKBP1-216ENST00000598201 GBAP04062 536 aa16.38■□□□□ 0.21
SHKBP1-216ENST00000598201 LAMP1P11279 417 aa16.38■□□□□ 0.21
SHKBP1-216ENST00000598201 BMP2P12643 396 aa16.38■□□□□ 0.21
SHKBP1-216ENST00000598201 CKMT2P17540 419 aa16.38■□□□□ 0.21
SHKBP1-216ENST00000598201 TIA1P31483 386 aaKnown RBP eCLIP16.38■□□□□ 0.21
SHKBP1-216ENST00000598201 CLDN2P57739 230 aa16.38■□□□□ 0.21
SHKBP1-216ENST00000598201 C21orf58P58505 322 aa16.38■□□□□ 0.21
SHKBP1-216ENST00000598201 MRPS21P82921 87 aaKnown RBP16.38■□□□□ 0.21
SHKBP1-216ENST00000598201 ARHGAP19Q14CB8 494 aa16.38■□□□□ 0.21
SHKBP1-216ENST00000598201 CLCA4Q14CN2 919 aa16.38■□□□□ 0.21
SHKBP1-216ENST00000598201 NRF1Q16656 503 aa16.38■□□□□ 0.21
SHKBP1-216ENST00000598201 HIST2H2ACQ16777 129 aaPredicted RBP16.38■□□□□ 0.21
SHKBP1-216ENST00000598201 HIST2H2AA3Q6FI13 130 aa16.38■□□□□ 0.21
SHKBP1-216ENST00000598201 ZNF852Q6ZMS4 543 aa16.38■□□□□ 0.21
SHKBP1-216ENST00000598201 TBC1D21Q8IYX1 336 aa16.38■□□□□ 0.21
SHKBP1-216ENST00000598201 ANKFN1Q8N957 763 aa16.38■□□□□ 0.21
SHKBP1-216ENST00000598201 LINC01555Q8NAE3 123 aa16.38■□□□□ 0.21
SHKBP1-216ENST00000598201 DNAJB8Q8NHS0 232 aa16.38■□□□□ 0.21
SHKBP1-216ENST00000598201 SHDQ96IW2 340 aa16.38■□□□□ 0.21
SHKBP1-216ENST00000598201 NR1H4Q96RI1 486 aaPredicted RBP16.38■□□□□ 0.21
SHKBP1-216ENST00000598201 FERD3LQ96RJ6 166 aa16.38■□□□□ 0.21
SHKBP1-216ENST00000598201 HAUS8Q9BT25 410 aa16.38■□□□□ 0.21
SHKBP1-216ENST00000598201 C1QTNF7Q9BXJ2 289 aa16.38■□□□□ 0.21
SHKBP1-216ENST00000598201 FGF22Q9HCT0 170 aa16.38■□□□□ 0.21
SHKBP1-216ENST00000598201 CUEDC1Q9NWM3 386 aaPredicted RBP16.38■□□□□ 0.21
SHKBP1-216ENST00000598201 ANAPC2Q9UJX6 822 aa16.38■□□□□ 0.21
SHKBP1-216ENST00000598201 SCML1Q9UN30 329 aa16.38■□□□□ 0.21
SHKBP1-216ENST00000598201 INVSQ9Y283 1065 aa16.38■□□□□ 0.21
SHKBP1-216ENST00000598201 GPSM3Q9Y4H4 160 aa16.38■□□□□ 0.21
SHKBP1-216ENST00000598201 KLHL33A6NCF5 533 aa16.38■□□□□ 0.21
SHKBP1-216ENST00000598201 GABRR3A8MPY1 467 aa16.38■□□□□ 0.21
SHKBP1-216ENST00000598201 RFXANKO14593 260 aa16.38■□□□□ 0.21
SHKBP1-216ENST00000598201 SCAMP2O15127 329 aaKnown RBP16.38■□□□□ 0.21
SHKBP1-216ENST00000598201 PCDH7O60245 1069 aa16.38■□□□□ 0.21
SHKBP1-216ENST00000598201 MT-ND1P03886 318 aa16.38■□□□□ 0.21
SHKBP1-216ENST00000598201 PIM1P11309 404 aaPredicted RBP16.38■□□□□ 0.21
SHKBP1-216ENST00000598201 NDUFV2P19404 249 aa16.38■□□□□ 0.21
SHKBP1-216ENST00000598201 EFNA1P20827 205 aaPredicted RBP16.38■□□□□ 0.21
SHKBP1-216ENST00000598201 ACSL1P33121 698 aa16.38■□□□□ 0.21
SHKBP1-216ENST00000598201 GZMMP51124 257 aa16.38■□□□□ 0.21
SHKBP1-216ENST00000598201 SRSF11Q05519 484 aaKnown RBP16.38■□□□□ 0.21
SHKBP1-216ENST00000598201 SIGLEC14Q08ET2 396 aa16.38■□□□□ 0.21
SHKBP1-216ENST00000598201 SLC14A1Q13336 389 aa16.38■□□□□ 0.21
SHKBP1-216ENST00000598201 MED21Q13503 144 aa16.38■□□□□ 0.21
SHKBP1-216ENST00000598201 DPY19L1Q2PZI1 675 aa16.38■□□□□ 0.21
SHKBP1-216ENST00000598201 KIAA1324Q6UXG2 1013 aaKnown RBP16.38■□□□□ 0.21
SHKBP1-216ENST00000598201 MSANTD1Q6ZTZ1 278 aa16.38■□□□□ 0.21
SHKBP1-216ENST00000598201 ZNF551Q7Z340 670 aaPredicted RBP16.38■□□□□ 0.21
SHKBP1-216ENST00000598201 COMMD6Q7Z4G1 85 aa16.38■□□□□ 0.21
SHKBP1-216ENST00000598201 CLECL1Q8IZS7 167 aa16.38■□□□□ 0.21
SHKBP1-216ENST00000598201 TMEM132CQ8N3T6 1108 aa16.38■□□□□ 0.21
SHKBP1-216ENST00000598201 PAPD5Q8NDF8 572 aaKnown RBP16.38■□□□□ 0.21
SHKBP1-216ENST00000598201 OR8J2Q8NGG1 315 aa16.38■□□□□ 0.21
SHKBP1-216ENST00000598201 WDR48Q8TAF3 677 aa16.38■□□□□ 0.21
SHKBP1-216ENST00000598201 CCDC115Q96NT0 180 aa16.38■□□□□ 0.21
SHKBP1-216ENST00000598201 GBP5Q96PP8 586 aa16.38■□□□□ 0.21
SHKBP1-216ENST00000598201 SEPHS2Q99611 448 aa16.38■□□□□ 0.21
SHKBP1-216ENST00000598201 SH3GL1Q99961 368 aa16.38■□□□□ 0.21
SHKBP1-216ENST00000598201 BATF3Q9NR55 127 aa16.38■□□□□ 0.21
SHKBP1-216ENST00000598201 CNOT11Q9UKZ1 510 aaKnown RBP16.38■□□□□ 0.21
SHKBP1-216ENST00000598201 EXO1Q9UQ84 846 aaKnown RBP16.38■□□□□ 0.21
SHKBP1-216ENST00000598201 BDP1A6H8Y1 2624 aa16.37■□□□□ 0.21
SHKBP1-216ENST00000598201 GNG14A0A1W2PPG7 69 aa16.37■□□□□ 0.21
SHKBP1-216ENST00000598201 C7orf72A4D263 438 aa16.37■□□□□ 0.21
SHKBP1-216ENST00000598201 KLHL18O94889 574 aa16.37■□□□□ 0.21
SHKBP1-216ENST00000598201 STARD6P59095 220 aa16.37■□□□□ 0.21
SHKBP1-216ENST00000598201 LAPTM5Q13571 262 aa16.37■□□□□ 0.21
SHKBP1-216ENST00000598201 DUOXA1Q1HG43 343 aa16.37■□□□□ 0.21
SHKBP1-216ENST00000598201 GALNT18Q6P9A2 607 aa16.37■□□□□ 0.21
SHKBP1-216ENST00000598201 TMIGD1Q6UXZ0 262 aa16.37■□□□□ 0.21
SHKBP1-216ENST00000598201 USP30Q70CQ3 517 aa16.37■□□□□ 0.21
SHKBP1-216ENST00000598201 CALHM3Q86XJ0 350 aa16.37■□□□□ 0.21
SHKBP1-216ENST00000598201 FIG4Q92562 907 aa16.37■□□□□ 0.21
SHKBP1-216ENST00000598201 NELL1Q92832 810 aa16.37■□□□□ 0.21
SHKBP1-216ENST00000598201 CENPKQ9BS16 269 aa16.37■□□□□ 0.21
SHKBP1-216ENST00000598201 RMI1Q9H9A7 625 aa16.37■□□□□ 0.21
SHKBP1-216ENST00000598201 IMP3Q9NV31 184 aaKnown RBP16.37■□□□□ 0.21
SHKBP1-216ENST00000598201 TTC28Q96AY4 2481 aa16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms