RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 SYNPO2LQ9H987 977 aa14.37□□□□□ -0.11
TRIM28-207ENST00000597136 MRPS30Q9NP92 439 aaKnown RBP14.37□□□□□ -0.11
TRIM28-207ENST00000597136 SLCO1B3Q9NPD5 702 aa14.37□□□□□ -0.11
TRIM28-207ENST00000597136 PCDHGA3Q9Y5H0 932 aa14.37□□□□□ -0.11
TRIM28-207ENST00000597136 CACNA1BQ00975 2339 aa14.37□□□□□ -0.11
TRIM28-207ENST00000597136 MED13Q9UHV7 2174 aa14.36□□□□□ -0.11
TRIM28-207ENST00000597136 TEX51A0A1B0GUA7 166 aa14.36□□□□□ -0.11
TRIM28-207ENST00000597136 KATNA1O75449 491 aa14.36□□□□□ -0.11
TRIM28-207ENST00000597136 HSPA4LO95757 839 aa14.36□□□□□ -0.11
TRIM28-207ENST00000597136 FGF5P12034 268 aa14.36□□□□□ -0.11
TRIM28-207ENST00000597136 CMPK1P30085 196 aa14.36□□□□□ -0.11
TRIM28-207ENST00000597136 LSP1P33241 339 aa14.36□□□□□ -0.11
TRIM28-207ENST00000597136 ERVPABLB-1P60509 514 aa14.36□□□□□ -0.11
TRIM28-207ENST00000597136 GNGT1P63211 74 aa14.36□□□□□ -0.11
TRIM28-207ENST00000597136 TGIF1Q15583 401 aa14.36□□□□□ -0.11
TRIM28-207ENST00000597136 RBBP7Q16576 425 aa14.36□□□□□ -0.11
TRIM28-207ENST00000597136 TUBB8Q3ZCM7 444 aa14.36□□□□□ -0.11
TRIM28-207ENST00000597136 TMTC4Q5T4D3 741 aa14.36□□□□□ -0.11
TRIM28-207ENST00000597136 PWWP2BQ6NUJ5 590 aa14.36□□□□□ -0.11
TRIM28-207ENST00000597136 FBXO42Q6P3S6 717 aa14.36□□□□□ -0.11
TRIM28-207ENST00000597136 LCTLQ6UWM7 567 aa14.36□□□□□ -0.11
TRIM28-207ENST00000597136 OR52B6Q8NGF0 335 aa14.36□□□□□ -0.11
TRIM28-207ENST00000597136 FGF11Q92914 225 aa14.36□□□□□ -0.11
TRIM28-207ENST00000597136 ZUFSPQ96AP4 578 aa14.36□□□□□ -0.11
TRIM28-207ENST00000597136 NAF1Q96HR8 494 aaKnown RBP14.36□□□□□ -0.11
TRIM28-207ENST00000597136 ZNF317Q96PQ6 595 aaPredicted RBP14.36□□□□□ -0.11
TRIM28-207ENST00000597136 ZNF382Q96SR6 550 aa14.36□□□□□ -0.11
TRIM28-207ENST00000597136 HAUS8Q9BT25 410 aa14.36□□□□□ -0.11
TRIM28-207ENST00000597136 DDA1Q9BW61 102 aa14.36□□□□□ -0.11
TRIM28-207ENST00000597136 SHCBP1LQ9BZQ2 653 aa14.36□□□□□ -0.11
TRIM28-207ENST00000597136 SPRY4Q9C004 299 aa14.36□□□□□ -0.11
TRIM28-207ENST00000597136 SPRTNQ9H040 489 aaPredicted RBP14.36□□□□□ -0.11
TRIM28-207ENST00000597136 THSD1Q9NS62 852 aa14.36□□□□□ -0.11
TRIM28-207ENST00000597136 PCDHGA7Q9Y5G6 932 aa14.36□□□□□ -0.11
TRIM28-207ENST00000597136 KCNE2Q9Y6J6 123 aa14.36□□□□□ -0.11
TRIM28-207ENST00000597136 ITPR1Q14643 2758 aa14.35□□□□□ -0.11
TRIM28-207ENST00000597136 A0A1B0GTL3 188 aa14.35□□□□□ -0.11
TRIM28-207ENST00000597136 TMEM150CB9EJG8 249 aa14.35□□□□□ -0.11
TRIM28-207ENST00000597136 H7BY64 318 aa14.35□□□□□ -0.11
TRIM28-207ENST00000597136 SNUPNO95149 360 aaKnown RBP14.35□□□□□ -0.11
TRIM28-207ENST00000597136 OTCP00480 354 aa14.35□□□□□ -0.11
TRIM28-207ENST00000597136 CCNG1P51959 295 aa14.35□□□□□ -0.11
TRIM28-207ENST00000597136 RAB15P59190 212 aa14.35□□□□□ -0.11
TRIM28-207ENST00000597136 ACY1Q03154 408 aa14.35□□□□□ -0.11
TRIM28-207ENST00000597136 PCDH1Q08174 1060 aa14.35□□□□□ -0.11
TRIM28-207ENST00000597136 IL11RAQ14626 422 aa14.35□□□□□ -0.11
TRIM28-207ENST00000597136 CEACAM20Q6UY09 585 aa14.35□□□□□ -0.11
TRIM28-207ENST00000597136 TIPARPQ7Z3E1 657 aaKnown RBP14.35□□□□□ -0.11
TRIM28-207ENST00000597136 ZCCHC14Q8WYQ9 949 aaKnown RBP14.35□□□□□ -0.11
TRIM28-207ENST00000597136 NEIL2Q969S2 332 aa14.35□□□□□ -0.11
TRIM28-207ENST00000597136 PRAP1Q96NZ9 151 aa14.35□□□□□ -0.11
TRIM28-207ENST00000597136 EML4Q9HC35 981 aaKnown RBP14.35□□□□□ -0.11
TRIM28-207ENST00000597136 GPRC5BQ9NZH0 403 aa14.35□□□□□ -0.11
TRIM28-207ENST00000597136 ZNF225Q9UK10 706 aa14.35□□□□□ -0.11
TRIM28-207ENST00000597136 RARRES3Q9UL19 164 aa14.35□□□□□ -0.11
TRIM28-207ENST00000597136 RAXQ9Y2V3 346 aa14.35□□□□□ -0.11
TRIM28-207ENST00000597136 H3BMH7 237 aa14.34□□□□□ -0.11
TRIM28-207ENST00000597136 PRAMEF4O60810 478 aa14.34□□□□□ -0.11
TRIM28-207ENST00000597136 NTRK1P04629 796 aa14.34□□□□□ -0.11
TRIM28-207ENST00000597136 VIMP08670 466 aaKnown RBP14.34□□□□□ -0.11
TRIM28-207ENST00000597136 GNAZP19086 355 aa14.34□□□□□ -0.11
TRIM28-207ENST00000597136 PKNOX1P55347 436 aa14.34□□□□□ -0.11
TRIM28-207ENST00000597136 TRAF3Q13114 568 aa14.34□□□□□ -0.11
TRIM28-207ENST00000597136 TMEM164Q5U3C3 297 aa14.34□□□□□ -0.11
TRIM28-207ENST00000597136 PRAMEF9Q5VWM5 478 aa14.34□□□□□ -0.11
TRIM28-207ENST00000597136 FRMPD2BQ6IN97 320 aa14.34□□□□□ -0.11
TRIM28-207ENST00000597136 ZNF425Q6IV72 752 aa14.34□□□□□ -0.11
TRIM28-207ENST00000597136 FAM47EQ6ZV65 393 aa14.34□□□□□ -0.11
TRIM28-207ENST00000597136 SYVN1Q86TM6 617 aa14.34□□□□□ -0.11
TRIM28-207ENST00000597136 CUZD1Q86UP6 607 aa14.34□□□□□ -0.11
TRIM28-207ENST00000597136 PAQR7Q86WK9 346 aa14.34□□□□□ -0.11
TRIM28-207ENST00000597136 C17orf64Q86WR6 236 aa14.34□□□□□ -0.11
TRIM28-207ENST00000597136 PPP1R3BQ86XI6 285 aa14.34□□□□□ -0.11
TRIM28-207ENST00000597136 PROSER1Q86XN7 944 aa14.34□□□□□ -0.11
TRIM28-207ENST00000597136 PLD3Q8IV08 490 aa14.34□□□□□ -0.11
TRIM28-207ENST00000597136 MCATQ8IVS2 390 aaKnown RBP14.34□□□□□ -0.11
TRIM28-207ENST00000597136 KDF1Q8NAX2 398 aaPredicted RBP14.34□□□□□ -0.11
TRIM28-207ENST00000597136 SLC38A9Q8NBW4 561 aa14.34□□□□□ -0.11
TRIM28-207ENST00000597136 AGAP11Q8TF27 550 aa14.34□□□□□ -0.11
TRIM28-207ENST00000597136 ATP6V1E2Q96A05 226 aa14.34□□□□□ -0.11
TRIM28-207ENST00000597136 C7orf26Q96N11 449 aa14.34□□□□□ -0.11
TRIM28-207ENST00000597136 NTMT1Q9BV86 223 aa14.34□□□□□ -0.11
TRIM28-207ENST00000597136 ASPSCR1Q9BZE9 553 aa14.34□□□□□ -0.11
TRIM28-207ENST00000597136 CHRNA10Q9GZZ6 450 aa14.34□□□□□ -0.11
TRIM28-207ENST00000597136 ILKAPQ9H0C8 392 aaPredicted RBP14.34□□□□□ -0.11
TRIM28-207ENST00000597136 TNFRSF12AQ9NP84 129 aa14.34□□□□□ -0.11
TRIM28-207ENST00000597136 MID1IP1Q9NPA3 183 aa14.34□□□□□ -0.11
TRIM28-207ENST00000597136 STARD5Q9NSY2 213 aa14.34□□□□□ -0.11
TRIM28-207ENST00000597136 HAO1Q9UJM8 370 aa14.34□□□□□ -0.11
TRIM28-207ENST00000597136 PILRAQ9UKJ1 303 aa14.34□□□□□ -0.11
TRIM28-207ENST00000597136 STK38LQ9Y2H1 464 aa14.34□□□□□ -0.11
TRIM28-207ENST00000597136 EPB41L3Q9Y2J2 1087 aaPredicted RBP14.34□□□□□ -0.11
TRIM28-207ENST00000597136 RAP2CQ9Y3L5 183 aa14.34□□□□□ -0.11
TRIM28-207ENST00000597136 DYRK1BQ9Y463 629 aa14.34□□□□□ -0.11
TRIM28-207ENST00000597136 KLK4Q9Y5K2 254 aa14.34□□□□□ -0.11
TRIM28-207ENST00000597136 CROCCQ5TZA2 2017 aa14.34□□□□□ -0.11
TRIM28-207ENST00000597136 LOC105369274A0A096LPK9 316 aa14.34□□□□□ -0.11
TRIM28-207ENST00000597136 LOC102723532A0A0G2JNH3 316 aa14.34□□□□□ -0.11
TRIM28-207ENST00000597136 A0A0J9YVX5 310 aa14.34□□□□□ -0.11
TRIM28-207ENST00000597136 OR2A25A4D2G3 310 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms