RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 TRIM60Q495X7 471 aa14.76□□□□□ -0.05
UPF1-204ENST00000596842 CST9Q5W186 159 aa14.76□□□□□ -0.05
UPF1-204ENST00000596842 RETSATQ6NUM9 610 aa14.76□□□□□ -0.05
UPF1-204ENST00000596842 DEFB128Q7Z7B8 93 aa14.76□□□□□ -0.05
UPF1-204ENST00000596842 CCDC71Q8IV32 467 aaPredicted RBP14.76□□□□□ -0.05
UPF1-204ENST00000596842 MFSD4AQ8N468 514 aa14.76□□□□□ -0.05
UPF1-204ENST00000596842 DYNC2LI1Q8TCX1 351 aa14.76□□□□□ -0.05
UPF1-204ENST00000596842 BCL7CQ8WUZ0 217 aaPredicted RBP14.76□□□□□ -0.05
UPF1-204ENST00000596842 P2RY13Q9BPV8 354 aa14.76□□□□□ -0.05
UPF1-204ENST00000596842 SMG9Q9H0W8 520 aaKnown RBP14.76□□□□□ -0.05
UPF1-204ENST00000596842 TRPS1Q9UHF7 1281 aa14.76□□□□□ -0.05
UPF1-204ENST00000596842 PDZK1P1A8MUH7 402 aa14.76□□□□□ -0.05
UPF1-204ENST00000596842 GAPDHSO14556 408 aaPredicted RBP14.76□□□□□ -0.05
UPF1-204ENST00000596842 WNT9AO14904 365 aa14.76□□□□□ -0.05
UPF1-204ENST00000596842 ACOX1Q15067 660 aa14.76□□□□□ -0.05
UPF1-204ENST00000596842 ZNF404Q494X3 552 aa14.76□□□□□ -0.05
UPF1-204ENST00000596842 INO80DQ53TQ3 878 aaPredicted RBP14.76□□□□□ -0.05
UPF1-204ENST00000596842 TRIM46Q7Z4K8 759 aa14.76□□□□□ -0.05
UPF1-204ENST00000596842 UBE2Q1Q7Z7E8 422 aa14.76□□□□□ -0.05
UPF1-204ENST00000596842 ZSWIM9Q86XI8 627 aa14.76□□□□□ -0.05
UPF1-204ENST00000596842 ARMC8Q8IUR7 673 aa14.76□□□□□ -0.05
UPF1-204ENST00000596842 RPRD1BQ9NQG5 326 aaKnown RBP14.76□□□□□ -0.05
UPF1-204ENST00000596842 RLIMQ9NVW2 624 aa14.76□□□□□ -0.05
UPF1-204ENST00000596842 KIAA1522Q9P206 1035 aaPredicted RBP14.76□□□□□ -0.05
UPF1-204ENST00000596842 SPASTQ9UBP0 616 aa14.76□□□□□ -0.05
UPF1-204ENST00000596842 DUSP12Q9UNI6 340 aa14.76□□□□□ -0.05
UPF1-204ENST00000596842 RNF6Q9Y252 685 aa14.76□□□□□ -0.05
UPF1-204ENST00000596842 DICER1Q9UPY3 1922 aaKnown RBP14.76□□□□□ -0.05
UPF1-204ENST00000596842 GRXCR2A6NFK2 248 aa14.76□□□□□ -0.05
UPF1-204ENST00000596842 TRIM64BA6NI03 449 aa14.76□□□□□ -0.05
UPF1-204ENST00000596842 TNFRSF11BO00300 401 aa14.76□□□□□ -0.05
UPF1-204ENST00000596842 KCNK5O95279 499 aa14.76□□□□□ -0.05
UPF1-204ENST00000596842 CHRNB1P11230 501 aa14.76□□□□□ -0.05
UPF1-204ENST00000596842 WEE1P30291 646 aa14.76□□□□□ -0.05
UPF1-204ENST00000596842 CTSOP43234 321 aaPredicted RBP14.76□□□□□ -0.05
UPF1-204ENST00000596842 IER5LQ5T953 404 aa14.76□□□□□ -0.05
UPF1-204ENST00000596842 SZRD1Q7Z422 152 aa14.76□□□□□ -0.05
UPF1-204ENST00000596842 TMCO2Q7Z6W1 182 aaPredicted RBP14.76□□□□□ -0.05
UPF1-204ENST00000596842 FAM217AQ8IXS0 508 aa14.76□□□□□ -0.05
UPF1-204ENST00000596842 C2orf73Q8N5S3 287 aaPredicted RBP14.76□□□□□ -0.05
UPF1-204ENST00000596842 ZNF300Q96RE9 604 aaPredicted RBP14.76□□□□□ -0.05
UPF1-204ENST00000596842 NECTIN3Q9NQS3 549 aa14.76□□□□□ -0.05
UPF1-204ENST00000596842 KCTD5Q9NXV2 234 aa14.76□□□□□ -0.05
UPF1-204ENST00000596842 IL37Q9NZH6 218 aa14.76□□□□□ -0.05
UPF1-204ENST00000596842 FNDC1Q4ZHG4 1894 aaPredicted RBP14.76□□□□□ -0.05
UPF1-204ENST00000596842 NLRC5Q86WI3 1866 aa14.76□□□□□ -0.05
UPF1-204ENST00000596842 MEN1O00255 615 aa14.75□□□□□ -0.05
UPF1-204ENST00000596842 HOXA9P31269 272 aa14.75□□□□□ -0.05
UPF1-204ENST00000596842 PRIM2P49643 509 aa14.75□□□□□ -0.05
UPF1-204ENST00000596842 ENTHD1Q8IYW4 607 aa14.75□□□□□ -0.05
UPF1-204ENST00000596842 C1orf52Q8N6N3 182 aaKnown RBP14.75□□□□□ -0.05
UPF1-204ENST00000596842 OR9Q2Q8NGE9 314 aa14.75□□□□□ -0.05
UPF1-204ENST00000596842 PDLIM5Q96HC4 596 aaKnown RBP14.75□□□□□ -0.05
UPF1-204ENST00000596842 TCF25Q9BQ70 676 aa14.75□□□□□ -0.05
UPF1-204ENST00000596842 NTMT1Q9BV86 223 aa14.75□□□□□ -0.05
UPF1-204ENST00000596842 ITPAQ9BY32 194 aa14.75□□□□□ -0.05
UPF1-204ENST00000596842 DUSP21Q9H596 190 aa14.75□□□□□ -0.05
UPF1-204ENST00000596842 MAP4K5Q9Y4K4 846 aa14.75□□□□□ -0.05
UPF1-204ENST00000596842 SMIM30A4D0T7 59 aa14.75□□□□□ -0.05
UPF1-204ENST00000596842 TTC34A8MYJ7 566 aa14.75□□□□□ -0.05
UPF1-204ENST00000596842 TLL1O43897 1013 aa14.75□□□□□ -0.05
UPF1-204ENST00000596842 PRPS2P11908 318 aa14.75□□□□□ -0.05
UPF1-204ENST00000596842 EPORP19235 508 aa14.75□□□□□ -0.05
UPF1-204ENST00000596842 COL9A2Q14055 689 aaPredicted RBP14.75□□□□□ -0.05
UPF1-204ENST00000596842 DUOXA1Q1HG43 343 aa14.75□□□□□ -0.05
UPF1-204ENST00000596842 ZXDCQ2QGD7 858 aaPredicted RBP14.75□□□□□ -0.05
UPF1-204ENST00000596842 TPRG1LQ5T0D9 272 aa14.75□□□□□ -0.05
UPF1-204ENST00000596842 STEAP3Q658P3 488 aa14.75□□□□□ -0.05
UPF1-204ENST00000596842 KDM4DQ6B0I6 523 aa14.75□□□□□ -0.05
UPF1-204ENST00000596842 ZNF605Q86T29 641 aa14.75□□□□□ -0.05
UPF1-204ENST00000596842 C2orf49Q9BVC5 232 aaPredicted RBP14.75□□□□□ -0.05
UPF1-204ENST00000596842 HECAQ9UBI9 543 aaPredicted RBP14.75□□□□□ -0.05
UPF1-204ENST00000596842 ERVK-11Q9UQG0 969 aa14.75□□□□□ -0.05
UPF1-204ENST00000596842 J3KTA2 159 aa14.75□□□□□ -0.05
UPF1-204ENST00000596842 GALTP07902 379 aa14.75□□□□□ -0.05
UPF1-204ENST00000596842 MAPK1P28482 360 aa14.75□□□□□ -0.05
UPF1-204ENST00000596842 NSG1P42857 185 aa14.75□□□□□ -0.05
UPF1-204ENST00000596842 ACLYP53396 1101 aa14.75□□□□□ -0.05
UPF1-204ENST00000596842 CYP4F8P98187 520 aa14.75□□□□□ -0.05
UPF1-204ENST00000596842 UGT8Q16880 541 aa14.75□□□□□ -0.05
UPF1-204ENST00000596842 IFNL1Q8IU54 200 aa14.75□□□□□ -0.05
UPF1-204ENST00000596842 UBE2J2Q8N2K1 259 aa14.75□□□□□ -0.05
UPF1-204ENST00000596842 SCLYQ96I15 445 aa14.75□□□□□ -0.05
UPF1-204ENST00000596842 MAGIXQ9H6Y5 334 aa14.75□□□□□ -0.05
UPF1-204ENST00000596842 TMEM184CQ9NVA4 438 aa14.75□□□□□ -0.05
UPF1-204ENST00000596842 TET1Q8NFU7 2136 aa14.75□□□□□ -0.05
UPF1-204ENST00000596842 H7C0S8 307 aa14.74□□□□□ -0.05
UPF1-204ENST00000596842 H7C4K7 107 aa14.74□□□□□ -0.05
UPF1-204ENST00000596842 APOA1P02647 267 aa14.74□□□□□ -0.05
UPF1-204ENST00000596842 ANXA4P09525 319 aaPredicted RBP14.74□□□□□ -0.05
UPF1-204ENST00000596842 OR56A5P0C7T3 313 aa14.74□□□□□ -0.05
UPF1-204ENST00000596842 TGM1P22735 817 aa14.74□□□□□ -0.05
UPF1-204ENST00000596842 CTSKP43235 329 aa14.74□□□□□ -0.05
UPF1-204ENST00000596842 RNF180Q86T96 592 aa14.74□□□□□ -0.05
UPF1-204ENST00000596842 CDH24Q86UP0 819 aa14.74□□□□□ -0.05
UPF1-204ENST00000596842 NAGSQ8N159 534 aa14.74□□□□□ -0.05
UPF1-204ENST00000596842 SLC5A8Q8N695 610 aa14.74□□□□□ -0.05
UPF1-204ENST00000596842 IL4I1Q96RQ9 567 aa14.74□□□□□ -0.05
UPF1-204ENST00000596842 DUSP26Q9BV47 211 aa14.74□□□□□ -0.05
UPF1-204ENST00000596842 SLIRPQ9GZT3 109 aaKnown RBP14.74□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms