RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 PLD6Q8N2A8 252 aaKnown RBP4.03□□□□□ -1.76
LIG3-211ENST00000588713 MFSD4AQ8N468 514 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 DHRSXQ8N5I4 330 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 RNF148Q8N7C7 305 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 KDM1BQ8NB78 822 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 FAM156AQ8NDB6 213 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 ZNF548Q8NEK5 533 aaPredicted RBP4.03□□□□□ -1.76
LIG3-211ENST00000588713 ABHD11Q8NFV4 315 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 LILRB4Q8NHJ6 448 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 HMGCLL1Q8TB92 370 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 TSPEARQ8WU66 669 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 CYB5D2Q8WUJ1 264 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 CYGBQ8WWM9 190 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 ITLN2Q8WWU7 325 aaPredicted RBP4.03□□□□□ -1.76
LIG3-211ENST00000588713 RXFP2Q8WXD0 754 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 TMEM158Q8WZ71 300 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 HDAC2Q92769 488 aaKnown RBP4.03□□□□□ -1.76
LIG3-211ENST00000588713 NAT6Q93015 286 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 ZNF566Q969W8 418 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 CCDC74AQ96AQ1 378 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 FBXL8Q96CD0 374 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 C14orf79Q96F83 325 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 SH3YL1Q96HL8 342 aaPredicted RBP4.03□□□□□ -1.76
LIG3-211ENST00000588713 FBXL20Q96IG2 436 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 C18orf12Q96KH6 178 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 DHRS1Q96LJ7 313 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 CSPG4P5Q96PW8 444 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 IL12RB2Q99665 862 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 OMDQ99983 421 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 TARS2Q9BW92 718 aaKnown RBP4.03□□□□□ -1.76
LIG3-211ENST00000588713 KRTAP4-8Q9BYQ9 185 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 OR2B2Q9GZK3 357 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 NDEL1Q9GZM8 345 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 NACA2Q9H009 215 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 KLHL25Q9H0H3 589 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 C2orf40Q9H1Z8 148 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 CDT1Q9H211 546 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 CXXC4Q9H2H0 198 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 MRPL46Q9H2W6 279 aaKnown RBP4.03□□□□□ -1.76
LIG3-211ENST00000588713 SNX25Q9H3E2 840 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 EHD1Q9H4M9 534 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 ARMC7Q9H6L4 198 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 NOL11Q9H8H0 719 aaKnown RBP4.03□□□□□ -1.76
LIG3-211ENST00000588713 EML4Q9HC35 981 aaKnown RBP4.03□□□□□ -1.76
LIG3-211ENST00000588713 PRSS16Q9NQE7 514 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 NECTIN3Q9NQS3 549 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 PAK1IP1Q9NWT1 392 aaPredicted RBP4.03□□□□□ -1.76
LIG3-211ENST00000588713 NPAP1Q9NZP6 1156 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 XPR1Q9UBH6 696 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 KLF15Q9UIH9 416 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 ZDHHC2Q9UIJ5 367 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 CPSF3Q9UKF6 684 aaKnown RBP4.03□□□□□ -1.76
LIG3-211ENST00000588713 KIAA1257Q9ULG3 409 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 AP4E1Q9UPM8 1137 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 EIF3LQ9Y262 564 aaKnown RBP4.03□□□□□ -1.76
LIG3-211ENST00000588713 ZNF281Q9Y2X9 895 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 NDUFAF1Q9Y375 327 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 TRAF6Q9Y4K3 522 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 CORINQ9Y5Q5 1042 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 PKDREJQ9NTG1 2253 aa4.03□□□□□ -1.76
LIG3-211ENST00000588713 TNRC6AQ8NDV7 1962 aaKnown RBP4.02□□□□□ -1.77
LIG3-211ENST00000588713 C1orf232A0A0U1RR37 186 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 ZCWPW2A0A1B0GU75 182 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 A0A1W2PQM1 296 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 TCRBV5S2A0A599 114 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 ILVBLA1L0T0 632 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 CCDC78A2IDD5 438 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 TYW5A2RUC4 315 aaKnown RBP4.02□□□□□ -1.77
LIG3-211ENST00000588713 ANKRD34BA5PLL1 514 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 FAM172BPA6NC97 362 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 POM121CA8CG34 1229 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 EVPLLA8MZ36 301 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 CENPBD1B2RD01 187 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 K7ERI5 159 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 UBXN8O00124 270 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 FXYD1O00168 92 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 NME4O00746 187 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 ARPC2O15144 300 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 UBDO15205 165 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 KMOO15229 486 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 ACOX3O15254 700 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 MID1O15344 667 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 IDH3BO43837 385 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 MRPS14O60783 128 aaKnown RBP4.02□□□□□ -1.77
LIG3-211ENST00000588713 UGT2B11O75310 529 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 GMNNO75496 209 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 PRSS23O95084 383 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 LY6G6DO95868 133 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 OLFM2O95897 454 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 JUNP05412 331 aaKnown RBP4.02□□□□□ -1.77
LIG3-211ENST00000588713 KRT19P08727 400 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 GNAO1P09471 354 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 SBK3P0C264 359 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 SLC35E2BP0CK96 405 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 ERVK-10P10266 1014 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 PDGFRAP16234 1089 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 ZNF182P17025 639 aaPredicted RBP4.02□□□□□ -1.77
LIG3-211ENST00000588713 HOXB6P17509 224 aaKnown RBP4.02□□□□□ -1.77
LIG3-211ENST00000588713 TFEBP19484 476 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 TCN1P20061 433 aaPredicted RBP4.02□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms