RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 CCNDBP1O95273 360 aa24.05■■□□□ 1.44
SHMT1-207ENST00000580002 ZNF806P0C7X5 589 aa24.05■■□□□ 1.44
SHMT1-207ENST00000580002 LBPP18428 481 aa24.05■■□□□ 1.44
SHMT1-207ENST00000580002 CD1CP29017 333 aa24.05■■□□□ 1.44
SHMT1-207ENST00000580002 SCTRP47872 440 aa24.05■■□□□ 1.44
SHMT1-207ENST00000580002 NME5P56597 212 aa24.05■■□□□ 1.44
SHMT1-207ENST00000580002 SNRPNP63162 240 aaKnown RBP24.05■■□□□ 1.44
SHMT1-207ENST00000580002 SPRED3Q2MJR0 410 aa24.05■■□□□ 1.44
SHMT1-207ENST00000580002 RNF165Q6ZSG1 346 aa24.05■■□□□ 1.44
SHMT1-207ENST00000580002 CLNKQ7Z7G1 428 aa24.05■■□□□ 1.44
SHMT1-207ENST00000580002 FAM181AQ8N9Y4 354 aa24.05■■□□□ 1.44
SHMT1-207ENST00000580002 ZNF385DQ9H6B1 395 aa24.05■■□□□ 1.44
SHMT1-207ENST00000580002 FAM60AQ9NP50 221 aa24.05■■□□□ 1.44
SHMT1-207ENST00000580002 PARD6AQ9NPB6 346 aa24.05■■□□□ 1.44
SHMT1-207ENST00000580002 ZFP69BQ9UJL9 534 aa24.05■■□□□ 1.44
SHMT1-207ENST00000580002 SNX7Q9UNH6 387 aa24.05■■□□□ 1.44
SHMT1-207ENST00000580002 COPG1Q9Y678 874 aaKnown RBP24.05■■□□□ 1.44
SHMT1-207ENST00000580002 A0A0J9YY10 115 aa24.04■■□□□ 1.44
SHMT1-207ENST00000580002 OR2A25A4D2G3 310 aa24.04■■□□□ 1.44
SHMT1-207ENST00000580002 UBDO15205 165 aa24.04■■□□□ 1.44
SHMT1-207ENST00000580002 CSF2RBP32927 897 aa24.04■■□□□ 1.44
SHMT1-207ENST00000580002 KIAA0040Q15053 153 aa24.04■■□□□ 1.44
SHMT1-207ENST00000580002 ATP6AP1LQ52LC2 224 aa24.04■■□□□ 1.44
SHMT1-207ENST00000580002 CHCHD4Q8N4Q1 142 aa24.04■■□□□ 1.44
SHMT1-207ENST00000580002 FNDC5Q8NAU1 212 aa24.04■■□□□ 1.44
SHMT1-207ENST00000580002 STON2Q8WXE9 905 aa24.04■■□□□ 1.44
SHMT1-207ENST00000580002 CCDC106Q9BWC9 280 aa24.04■■□□□ 1.44
SHMT1-207ENST00000580002 MRPL1Q9BYD6 325 aaKnown RBP24.04■■□□□ 1.44
SHMT1-207ENST00000580002 RHBGQ9H310 441 aa24.04■■□□□ 1.44
SHMT1-207ENST00000580002 LRTM1Q9HBL6 345 aa24.04■■□□□ 1.44
SHMT1-207ENST00000580002 RIC8BQ9NVN3 520 aa24.04■■□□□ 1.44
SHMT1-207ENST00000580002 MUC6Q6W4X9 2439 aa24.04■■□□□ 1.44
SHMT1-207ENST00000580002 TRBC2A0A5B9 178 aa24.03■■□□□ 1.44
SHMT1-207ENST00000580002 SERTM1A2A2V5 107 aa24.03■■□□□ 1.44
SHMT1-207ENST00000580002 SLC9B1P1A6NJY1 282 aa24.03■■□□□ 1.44
SHMT1-207ENST00000580002 ZW10O43264 779 aa24.03■■□□□ 1.44
SHMT1-207ENST00000580002 SEC22BO75396 215 aa24.03■■□□□ 1.44
SHMT1-207ENST00000580002 DCTN3O75935 186 aa24.03■■□□□ 1.44
SHMT1-207ENST00000580002 SERPIND1P05546 499 aa24.03■■□□□ 1.44
SHMT1-207ENST00000580002 CTSBP07858 339 aa24.03■■□□□ 1.44
SHMT1-207ENST00000580002 RPL38P63173 70 aaKnown RBP24.03■■□□□ 1.44
SHMT1-207ENST00000580002 PROX2Q3B8N5 592 aa24.03■■□□□ 1.44
SHMT1-207ENST00000580002 TMPRSS9Q7Z410 1059 aa24.03■■□□□ 1.44
SHMT1-207ENST00000580002 CREB3L4Q8TEY5 395 aa24.03■■□□□ 1.44
SHMT1-207ENST00000580002 TRAPPC9Q96Q05 1148 aa24.03■■□□□ 1.44
SHMT1-207ENST00000580002 CCT7Q99832 543 aa24.03■■□□□ 1.44
SHMT1-207ENST00000580002 OTOGLQ3ZCN5 2332 aa24.03■■□□□ 1.44
SHMT1-207ENST00000580002 A0A0J9YVX5 310 aa24.03■■□□□ 1.44
SHMT1-207ENST00000580002 EME2A4GXA9 379 aaPredicted RBP24.03■■□□□ 1.44
SHMT1-207ENST00000580002 UBOX5O94941 541 aa24.03■■□□□ 1.44
SHMT1-207ENST00000580002 CDH3P22223 829 aa24.03■■□□□ 1.44
SHMT1-207ENST00000580002 EPHA4P54764 986 aa24.03■■□□□ 1.44
SHMT1-207ENST00000580002 NR1D2Q14995 579 aa24.03■■□□□ 1.44
SHMT1-207ENST00000580002 ZSCAN26Q16670 478 aa24.03■■□□□ 1.44
SHMT1-207ENST00000580002 SPRED1Q7Z699 444 aa24.03■■□□□ 1.44
SHMT1-207ENST00000580002 BAHD1Q8TBE0 780 aaPredicted RBP24.03■■□□□ 1.44
SHMT1-207ENST00000580002 REPS1Q96D71 796 aa24.03■■□□□ 1.44
SHMT1-207ENST00000580002 F2RL3Q96RI0 385 aa24.03■■□□□ 1.44
SHMT1-207ENST00000580002 SORBS1Q9BX66 1292 aaKnown RBP24.03■■□□□ 1.44
SHMT1-207ENST00000580002 NT5DC2Q9H857 520 aa24.03■■□□□ 1.44
SHMT1-207ENST00000580002 DNAAF2Q9NVR5 837 aaKnown RBP24.03■■□□□ 1.44
SHMT1-207ENST00000580002 ATXN7L1Q9ULK2 861 aaPredicted RBP24.03■■□□□ 1.44
SHMT1-207ENST00000580002 UNC13CQ8NB66 2214 aa24.03■■□□□ 1.44
SHMT1-207ENST00000580002 LOC105369274A0A096LPK9 316 aa24.02■■□□□ 1.44
SHMT1-207ENST00000580002 LOC102723532A0A0G2JNH3 316 aa24.02■■□□□ 1.44
SHMT1-207ENST00000580002 ANKDD1BA6NHY2 528 aa24.02■■□□□ 1.44
SHMT1-207ENST00000580002 C9JVG2 144 aa24.02■■□□□ 1.44
SHMT1-207ENST00000580002 EBAG9O00559 213 aa24.02■■□□□ 1.44
SHMT1-207ENST00000580002 CXCR2P25025 360 aa24.02■■□□□ 1.44
SHMT1-207ENST00000580002 TBL3Q12788 808 aaKnown RBP24.02■■□□□ 1.44
SHMT1-207ENST00000580002 IL23RQ5VWK5 629 aa24.02■■□□□ 1.44
SHMT1-207ENST00000580002 METTL21CQ5VZV1 264 aa24.02■■□□□ 1.44
SHMT1-207ENST00000580002 FRMPD2BQ6IN97 320 aa24.02■■□□□ 1.44
SHMT1-207ENST00000580002 DBX2Q6ZNG2 339 aa24.02■■□□□ 1.44
SHMT1-207ENST00000580002 OR4N4Q8N0Y3 316 aa24.02■■□□□ 1.44
SHMT1-207ENST00000580002 AHCYL2Q96HN2 611 aaKnown RBP24.02■■□□□ 1.44
SHMT1-207ENST00000580002 NUDT22Q9BRQ3 303 aa24.02■■□□□ 1.44
SHMT1-207ENST00000580002 KLHL31Q9H511 634 aa24.02■■□□□ 1.44
SHMT1-207ENST00000580002 ARL8BQ9NVJ2 186 aa24.02■■□□□ 1.44
SHMT1-207ENST00000580002 C1orf109Q9NX04 203 aa24.02■■□□□ 1.44
SHMT1-207ENST00000580002 VPS29Q9UBQ0 182 aa24.02■■□□□ 1.44
SHMT1-207ENST00000580002 PILRAQ9UKJ1 303 aa24.02■■□□□ 1.44
SHMT1-207ENST00000580002 DLGAP4Q9Y2H0 992 aa24.02■■□□□ 1.44
SHMT1-207ENST00000580002 POLR3HQ9Y535 204 aaPredicted RBP24.02■■□□□ 1.44
SHMT1-207ENST00000580002 IGHV5-51A0A0C4DH38 117 aa24.01■■□□□ 1.43
SHMT1-207ENST00000580002 FOXE1O00358 373 aaPredicted RBP24.01■■□□□ 1.43
SHMT1-207ENST00000580002 VPS4BO75351 444 aa24.01■■□□□ 1.43
SHMT1-207ENST00000580002 GPR3P46089 330 aa24.01■■□□□ 1.43
SHMT1-207ENST00000580002 CSTF3Q12996 717 aaKnown RBP24.01■■□□□ 1.43
SHMT1-207ENST00000580002 KLHL35Q6PF15 583 aa24.01■■□□□ 1.43
SHMT1-207ENST00000580002 VN1R4Q7Z5H5 301 aa24.01■■□□□ 1.43
SHMT1-207ENST00000580002 GBP7Q8N8V2 638 aaPredicted RBP24.01■■□□□ 1.43
SHMT1-207ENST00000580002 OR9I1Q8NGQ6 314 aa24.01■■□□□ 1.43
SHMT1-207ENST00000580002 UBE2E3Q969T4 207 aa24.01■■□□□ 1.43
SHMT1-207ENST00000580002 SEMA6CQ9H3T2 930 aa24.01■■□□□ 1.43
SHMT1-207ENST00000580002 SEMA4GQ9NTN9 838 aa24.01■■□□□ 1.43
SHMT1-207ENST00000580002 BAIAP2L1Q9UHR4 511 aa24.01■■□□□ 1.43
SHMT1-207ENST00000580002 PCDHGA4Q9Y5G9 962 aa24.01■■□□□ 1.43
SHMT1-207ENST00000580002 MDC1Q14676 2089 aaKnown RBP24.01■■□□□ 1.43
SHMT1-207ENST00000580002 EP300Q09472 2414 aaPredicted RBP24.01■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms