RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 ZNF655Q8N720 491 aaPredicted RBP16.34■□□□□ 0.21
NUP88-210ENST00000574867 ZNF740Q8NDX6 193 aa16.34■□□□□ 0.21
NUP88-210ENST00000574867 RAB3IL1Q8TBN0 382 aa16.34■□□□□ 0.21
NUP88-210ENST00000574867 REPS1Q96D71 796 aa16.34■□□□□ 0.21
NUP88-210ENST00000574867 MOCOSQ96EN8 888 aa16.34■□□□□ 0.21
NUP88-210ENST00000574867 FCRL4Q96PJ5 515 aa16.34■□□□□ 0.21
NUP88-210ENST00000574867 TEFMQ96QE5 360 aaKnown RBP16.34■□□□□ 0.21
NUP88-210ENST00000574867 ZPBPQ9BS86 351 aa16.34■□□□□ 0.21
NUP88-210ENST00000574867 ASPSCR1Q9BZE9 553 aa16.34■□□□□ 0.21
NUP88-210ENST00000574867 B3GNT4Q9C0J1 378 aa16.34■□□□□ 0.21
NUP88-210ENST00000574867 TRPS1Q9UHF7 1281 aa16.34■□□□□ 0.21
NUP88-210ENST00000574867 ZFP69BQ9UJL9 534 aa16.34■□□□□ 0.21
NUP88-210ENST00000574867 NEUROG3Q9Y4Z2 214 aa16.34■□□□□ 0.21
NUP88-210ENST00000574867 MDC1Q14676 2089 aaKnown RBP16.34■□□□□ 0.21
NUP88-210ENST00000574867 TXNDC9O14530 226 aa16.34■□□□□ 0.21
NUP88-210ENST00000574867 HCRTR1O43613 425 aa16.34■□□□□ 0.21
NUP88-210ENST00000574867 ESRRBO95718 433 aa16.34■□□□□ 0.21
NUP88-210ENST00000574867 ENO1P06733 434 aaKnown RBP16.34■□□□□ 0.21
NUP88-210ENST00000574867 ADRB1P08588 477 aa16.34■□□□□ 0.21
NUP88-210ENST00000574867 TSPAN8P19075 237 aa16.34■□□□□ 0.21
NUP88-210ENST00000574867 GABREP78334 506 aa16.34■□□□□ 0.21
NUP88-210ENST00000574867 RBBP5Q15291 538 aaKnown RBP16.34■□□□□ 0.21
NUP88-210ENST00000574867 LARP7Q4G0J3 582 aaKnown RBP eCLIP16.34■□□□□ 0.21
NUP88-210ENST00000574867 C10orf62Q5T681 223 aaPredicted RBP16.34■□□□□ 0.21
NUP88-210ENST00000574867 DCAF12Q5T6F0 453 aa16.34■□□□□ 0.21
NUP88-210ENST00000574867 FOXR1Q6PIV2 292 aa16.34■□□□□ 0.21
NUP88-210ENST00000574867 IGF2-ASQ6U949 168 aa16.34■□□□□ 0.21
NUP88-210ENST00000574867 ZCCHC23Q6ZST2 131 aa16.34■□□□□ 0.21
NUP88-210ENST00000574867 MARCH9Q86YJ5 346 aa16.34■□□□□ 0.21
NUP88-210ENST00000574867 LAS2Q8IYD9 372 aa16.34■□□□□ 0.21
NUP88-210ENST00000574867 OR4F6Q8NGB9 312 aa16.34■□□□□ 0.21
NUP88-210ENST00000574867 AGAP11Q8TF27 550 aa16.34■□□□□ 0.21
NUP88-210ENST00000574867 TAAR9Q96RI9 348 aa16.34■□□□□ 0.21
NUP88-210ENST00000574867 SCNM1Q9BWG6 230 aa16.34■□□□□ 0.21
NUP88-210ENST00000574867 NLNQ9BYT8 704 aa16.34■□□□□ 0.21
NUP88-210ENST00000574867 EML4Q9HC35 981 aaKnown RBP16.34■□□□□ 0.21
NUP88-210ENST00000574867 KLK13Q9UKR3 277 aa16.34■□□□□ 0.21
NUP88-210ENST00000574867 PCDHGA11Q9Y5H2 935 aa16.34■□□□□ 0.21
NUP88-210ENST00000574867 AP1M2Q9Y6Q5 423 aa16.34■□□□□ 0.21
NUP88-210ENST00000574867 TMEM114B3SHH9 223 aa16.33■□□□□ 0.21
NUP88-210ENST00000574867 H0YGG7 62 aa16.33■□□□□ 0.21
NUP88-210ENST00000574867 H0YIV9 168 aa16.33■□□□□ 0.21
NUP88-210ENST00000574867 OR2B3O76000 313 aa16.33■□□□□ 0.21
NUP88-210ENST00000574867 SNUPNO95149 360 aaKnown RBP16.33■□□□□ 0.21
NUP88-210ENST00000574867 CHN1P15882 459 aa16.33■□□□□ 0.21
NUP88-210ENST00000574867 MAPK10P53779 464 aa16.33■□□□□ 0.21
NUP88-210ENST00000574867 VSX2P58304 361 aaPredicted RBP16.33■□□□□ 0.21
NUP88-210ENST00000574867 ARF3P61204 181 aaPredicted RBP16.33■□□□□ 0.21
NUP88-210ENST00000574867 CAMK2BQ13554 666 aa16.33■□□□□ 0.21
NUP88-210ENST00000574867 TMEM164Q5U3C3 297 aa16.33■□□□□ 0.21
NUP88-210ENST00000574867 TLDC1Q6P9B6 456 aa16.33■□□□□ 0.21
NUP88-210ENST00000574867 HOMEZQ8IX15 550 aa16.33■□□□□ 0.21
NUP88-210ENST00000574867 OR1L3Q8NH93 324 aa16.33■□□□□ 0.21
NUP88-210ENST00000574867 MDM1Q8TC05 714 aa16.33■□□□□ 0.21
NUP88-210ENST00000574867 NXPE2Q96DL1 559 aa16.33■□□□□ 0.21
NUP88-210ENST00000574867 CDK15Q96Q40 435 aa16.33■□□□□ 0.21
NUP88-210ENST00000574867 IRAK4Q9NWZ3 460 aa16.33■□□□□ 0.21
NUP88-210ENST00000574867 ADGRE2Q9UHX3 823 aa16.33■□□□□ 0.21
NUP88-210ENST00000574867 RNF11Q9Y3C5 154 aa16.33■□□□□ 0.21
NUP88-210ENST00000574867 TSC22D4Q9Y3Q8 395 aa16.33■□□□□ 0.21
NUP88-210ENST00000574867 PCDHGA3Q9Y5H0 932 aa16.33■□□□□ 0.21
NUP88-210ENST00000574867 LOC105369274A0A096LPK9 316 aa16.33■□□□□ 0.2
NUP88-210ENST00000574867 LOC102723532A0A0G2JNH3 316 aa16.33■□□□□ 0.2
NUP88-210ENST00000574867 PPP6CO00743 305 aa16.33■□□□□ 0.2
NUP88-210ENST00000574867 SLC35G6P0C7Q6 338 aa16.33■□□□□ 0.2
NUP88-210ENST00000574867 ETV5P41161 510 aa16.33■□□□□ 0.2
NUP88-210ENST00000574867 ERVPABLB-1P60509 514 aa16.33■□□□□ 0.2
NUP88-210ENST00000574867 LETMD1Q6P1Q0 360 aa16.33■□□□□ 0.2
NUP88-210ENST00000574867 VN1R4Q7Z5H5 301 aa16.33■□□□□ 0.2
NUP88-210ENST00000574867 SYVN1Q86TM6 617 aa16.33■□□□□ 0.2
NUP88-210ENST00000574867 ASPGQ86U10 573 aa16.33■□□□□ 0.2
NUP88-210ENST00000574867 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP16.33■□□□□ 0.2
NUP88-210ENST00000574867 OR4N4Q8N0Y3 316 aa16.33■□□□□ 0.2
NUP88-210ENST00000574867 LSMEM2Q8N112 164 aa16.33■□□□□ 0.2
NUP88-210ENST00000574867 CSNK1A1LQ8N752 337 aa16.33■□□□□ 0.2
NUP88-210ENST00000574867 CAMKVQ8NCB2 501 aa16.33■□□□□ 0.2
NUP88-210ENST00000574867 TRPV3Q8NET8 790 aa16.33■□□□□ 0.2
NUP88-210ENST00000574867 PRR11Q96HE9 360 aaPredicted RBP16.33■□□□□ 0.2
NUP88-210ENST00000574867 SLC29A3Q9BZD2 475 aa16.33■□□□□ 0.2
NUP88-210ENST00000574867 MID1IP1Q9NPA3 183 aa16.33■□□□□ 0.2
NUP88-210ENST00000574867 INTS9Q9NV88 658 aaKnown RBP16.33■□□□□ 0.2
NUP88-210ENST00000574867 PMS2P1A4D2B8 440 aa16.32■□□□□ 0.2
NUP88-210ENST00000574867 H3BMH7 237 aa16.32■□□□□ 0.2
NUP88-210ENST00000574867 ZSCAN9O15535 394 aaPredicted RBP16.32■□□□□ 0.2
NUP88-210ENST00000574867 LCMT2O60294 686 aaKnown RBP16.32■□□□□ 0.2
NUP88-210ENST00000574867 BGNP21810 368 aa16.32■□□□□ 0.2
NUP88-210ENST00000574867 PHEXP78562 749 aa16.32■□□□□ 0.2
NUP88-210ENST00000574867 PWP1Q13610 501 aa16.32■□□□□ 0.2
NUP88-210ENST00000574867 GRM7Q14831 915 aa16.32■□□□□ 0.2
NUP88-210ENST00000574867 CPSF6Q16630 551 aaKnown RBP eCLIP16.32■□□□□ 0.2
NUP88-210ENST00000574867 ANKRD53Q8N9V6 530 aa16.32■□□□□ 0.2
NUP88-210ENST00000574867 TTC29Q8NA56 475 aaPredicted RBP16.32■□□□□ 0.2
NUP88-210ENST00000574867 OR7G3Q8NG95 312 aa16.32■□□□□ 0.2
NUP88-210ENST00000574867 DYDC1Q8WWB3 177 aa16.32■□□□□ 0.2
NUP88-210ENST00000574867 RHBGQ9H310 441 aa16.32■□□□□ 0.2
NUP88-210ENST00000574867 APMAPQ9HDC9 416 aa16.32■□□□□ 0.2
NUP88-210ENST00000574867 ZNF225Q9UK10 706 aa16.32■□□□□ 0.2
NUP88-210ENST00000574867 ZNF490Q9ULM2 529 aaPredicted RBP16.32■□□□□ 0.2
NUP88-210ENST00000574867 MSRB2Q9Y3D2 182 aa16.32■□□□□ 0.2
NUP88-210ENST00000574867 A0A1B0GTL3 188 aa16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms