RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 H3BSA7 217 aa19.52■□□□□ 0.72
CLN3-230ENST00000568076 FOXE1O00358 373 aaPredicted RBP19.52■□□□□ 0.72
CLN3-230ENST00000568076 MID1O15344 667 aa19.52■□□□□ 0.72
CLN3-230ENST00000568076 PCDH7O60245 1069 aa19.52■□□□□ 0.72
CLN3-230ENST00000568076 CCNDBP1O95273 360 aa19.52■□□□□ 0.72
CLN3-230ENST00000568076 ALBP02768 609 aa19.52■□□□□ 0.72
CLN3-230ENST00000568076 THRBP10828 461 aa19.52■□□□□ 0.72
CLN3-230ENST00000568076 WASP42768 502 aa19.52■□□□□ 0.72
CLN3-230ENST00000568076 C16orf72Q14CZ0 275 aa19.52■□□□□ 0.72
CLN3-230ENST00000568076 SHHQ15465 462 aa19.52■□□□□ 0.72
CLN3-230ENST00000568076 VMACQ2NL98 169 aa19.52■□□□□ 0.72
CLN3-230ENST00000568076 CPTPQ5TA50 214 aa19.52■□□□□ 0.72
CLN3-230ENST00000568076 GALNT18Q6P9A2 607 aa19.52■□□□□ 0.72
CLN3-230ENST00000568076 BORAQ6PGQ7 559 aa19.52■□□□□ 0.72
CLN3-230ENST00000568076 NXPE4Q6UWF7 544 aa19.52■□□□□ 0.72
CLN3-230ENST00000568076 ARMCX6Q7L4S7 300 aa19.52■□□□□ 0.72
CLN3-230ENST00000568076 CHPFQ8IZ52 775 aa19.52■□□□□ 0.72
CLN3-230ENST00000568076 ZNF740Q8NDX6 193 aa19.52■□□□□ 0.72
CLN3-230ENST00000568076 PNPT1Q8TCS8 783 aaKnown RBP19.52■□□□□ 0.72
CLN3-230ENST00000568076 STARD8Q92502 1023 aa19.52■□□□□ 0.72
CLN3-230ENST00000568076 COQ8BQ96D53 544 aa19.52■□□□□ 0.72
CLN3-230ENST00000568076 EHD1Q9H4M9 534 aa19.52■□□□□ 0.72
CLN3-230ENST00000568076 CCDC177Q9NQR7 707 aaPredicted RBP19.52■□□□□ 0.72
CLN3-230ENST00000568076 TM7SF3Q9NS93 570 aa19.52■□□□□ 0.72
CLN3-230ENST00000568076 ASF1AQ9Y294 204 aa19.52■□□□□ 0.72
CLN3-230ENST00000568076 PCDHB11Q9Y5F2 797 aa19.52■□□□□ 0.72
CLN3-230ENST00000568076 NUP214P35658 2090 aaPredicted RBP19.52■□□□□ 0.72
CLN3-230ENST00000568076 GNG14A0A1W2PPG7 69 aa19.52■□□□□ 0.71
CLN3-230ENST00000568076 CCDC160A6NGH7 325 aa19.52■□□□□ 0.71
CLN3-230ENST00000568076 SAP18O00422 153 aaKnown RBP19.52■□□□□ 0.71
CLN3-230ENST00000568076 BMP10O95393 424 aa19.52■□□□□ 0.71
CLN3-230ENST00000568076 HPRP00739 348 aa19.52■□□□□ 0.71
CLN3-230ENST00000568076 TGFB1P01137 390 aa19.52■□□□□ 0.71
CLN3-230ENST00000568076 GBAP04062 536 aa19.52■□□□□ 0.71
CLN3-230ENST00000568076 PPP2R2BQ00005 443 aa19.52■□□□□ 0.71
CLN3-230ENST00000568076 VAC14Q08AM6 782 aa19.52■□□□□ 0.71
CLN3-230ENST00000568076 WSCD2Q2TBF2 565 aa19.52■□□□□ 0.71
CLN3-230ENST00000568076 AGBL4Q5VU57 503 aa19.52■□□□□ 0.71
CLN3-230ENST00000568076 CPZQ66K79 652 aa19.52■□□□□ 0.71
CLN3-230ENST00000568076 UNC5DQ6UXZ4 953 aa19.52■□□□□ 0.71
CLN3-230ENST00000568076 PDZD3Q86UT5 571 aa19.52■□□□□ 0.71
CLN3-230ENST00000568076 ZCCHC7Q8N3Z6 543 aaKnown RBP19.52■□□□□ 0.71
CLN3-230ENST00000568076 PUM2Q8TB72 1066 aaKnown RBP eCLIP19.52■□□□□ 0.71
CLN3-230ENST00000568076 ZFAND2BQ8WV99 257 aa19.52■□□□□ 0.71
CLN3-230ENST00000568076 PHF12Q96QT6 1004 aa19.52■□□□□ 0.71
CLN3-230ENST00000568076 OSBPL10Q9BXB5 764 aa19.52■□□□□ 0.71
CLN3-230ENST00000568076 TRIM4Q9C037 500 aa19.52■□□□□ 0.71
CLN3-230ENST00000568076 CDH7Q9ULB5 785 aa19.52■□□□□ 0.71
CLN3-230ENST00000568076 C1orf226A1L170 272 aa19.51■□□□□ 0.71
CLN3-230ENST00000568076 MAGEA2P43356 314 aa19.51■□□□□ 0.71
CLN3-230ENST00000568076 CDK3Q00526 305 aa19.51■□□□□ 0.71
CLN3-230ENST00000568076 LRRC23Q53EV4 343 aaPredicted RBP19.51■□□□□ 0.71
CLN3-230ENST00000568076 ZNF385BQ569K4 471 aa19.51■□□□□ 0.71
CLN3-230ENST00000568076 COMMD6Q7Z4G1 85 aa19.51■□□□□ 0.71
CLN3-230ENST00000568076 GALNT10Q86SR1 603 aa19.51■□□□□ 0.71
CLN3-230ENST00000568076 C2orf73Q8N5S3 287 aaPredicted RBP19.51■□□□□ 0.71
CLN3-230ENST00000568076 MUS81Q96NY9 551 aa19.51■□□□□ 0.71
CLN3-230ENST00000568076 PBX4Q9BYU1 374 aa19.51■□□□□ 0.71
CLN3-230ENST00000568076 OR51B5Q9H339 312 aa19.51■□□□□ 0.71
CLN3-230ENST00000568076 TPT1P8Q9HAU6 139 aa19.51■□□□□ 0.71
CLN3-230ENST00000568076 SERGEFQ9UGK8 458 aa19.51■□□□□ 0.71
CLN3-230ENST00000568076 BTNL2Q9UIR0 455 aa19.51■□□□□ 0.71
CLN3-230ENST00000568076 STON1Q9Y6Q2 735 aa19.51■□□□□ 0.71
CLN3-230ENST00000568076 A0A087WXM4 84 aa19.5■□□□□ 0.71
CLN3-230ENST00000568076 GNGT2O14610 69 aa19.5■□□□□ 0.71
CLN3-230ENST00000568076 NOBOXO60393 691 aa19.5■□□□□ 0.71
CLN3-230ENST00000568076 KLHL18O94889 574 aa19.5■□□□□ 0.71
CLN3-230ENST00000568076 DCTP40126 519 aa19.5■□□□□ 0.71
CLN3-230ENST00000568076 ROR2Q01974 943 aaKnown RBP19.5■□□□□ 0.71
CLN3-230ENST00000568076 LSAMPQ13449 338 aa19.5■□□□□ 0.71
CLN3-230ENST00000568076 GAB1Q13480 694 aa19.5■□□□□ 0.71
CLN3-230ENST00000568076 SPIDRQ14159 915 aa19.5■□□□□ 0.71
CLN3-230ENST00000568076 C2orf27AQ580R0 203 aa19.5■□□□□ 0.71
CLN3-230ENST00000568076 PAGE2BQ5JRK9 111 aa19.5■□□□□ 0.71
CLN3-230ENST00000568076 FAM46CQ5VWP2 391 aa19.5■□□□□ 0.71
CLN3-230ENST00000568076 SPESP1Q6UW49 350 aa19.5■□□□□ 0.71
CLN3-230ENST00000568076 FKBP9P1Q75LS8 142 aa19.5■□□□□ 0.71
CLN3-230ENST00000568076 AMZ2Q86W34 360 aa19.5■□□□□ 0.71
CLN3-230ENST00000568076 PGBD3Q8N328 593 aa19.5■□□□□ 0.71
CLN3-230ENST00000568076 SVOPLQ8N434 492 aa19.5■□□□□ 0.71
CLN3-230ENST00000568076 WDR48Q8TAF3 677 aa19.5■□□□□ 0.71
CLN3-230ENST00000568076 TOR3AQ9H497 397 aa19.5■□□□□ 0.71
CLN3-230ENST00000568076 LTB4R2Q9NPC1 389 aa19.5■□□□□ 0.71
CLN3-230ENST00000568076 DZANK1Q9NVP4 752 aa19.5■□□□□ 0.71
CLN3-230ENST00000568076 SIRT5Q9NXA8 310 aa19.5■□□□□ 0.71
CLN3-230ENST00000568076 TUBA8Q9NY65 449 aaPredicted RBP19.5■□□□□ 0.71
CLN3-230ENST00000568076 VNN3Q9NY84 501 aa19.5■□□□□ 0.71
CLN3-230ENST00000568076 USE1Q9NZ43 259 aa19.5■□□□□ 0.71
CLN3-230ENST00000568076 LINC01565O15544 149 aa19.5■□□□□ 0.71
CLN3-230ENST00000568076 CDH2P19022 906 aaPredicted RBP19.5■□□□□ 0.71
CLN3-230ENST00000568076 SHMT2P34897 504 aa19.5■□□□□ 0.71
CLN3-230ENST00000568076 HPCAL1P37235 193 aa19.5■□□□□ 0.71
CLN3-230ENST00000568076 LARP7Q4G0J3 582 aaKnown RBP eCLIP19.5■□□□□ 0.71
CLN3-230ENST00000568076 SYCE2Q6PIF2 218 aa19.5■□□□□ 0.71
CLN3-230ENST00000568076 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP19.5■□□□□ 0.71
CLN3-230ENST00000568076 ADHFE1Q8IWW8 467 aa19.5■□□□□ 0.71
CLN3-230ENST00000568076 EID3Q8N140 333 aa19.5■□□□□ 0.71
CLN3-230ENST00000568076 SDCCAG3Q96C92 435 aa19.5■□□□□ 0.71
CLN3-230ENST00000568076 MBOAT4Q96T53 435 aa19.5■□□□□ 0.71
CLN3-230ENST00000568076 KXD1Q9BQD3 176 aa19.5■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms