RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 GPATCH11Q8N954 259 aa14.1□□□□□ -0.15
CLN3-213ENST00000565047 SPATA4Q8NEY3 305 aa14.1□□□□□ -0.15
CLN3-213ENST00000565047 OR9A4Q8NGU2 314 aa14.1□□□□□ -0.15
CLN3-213ENST00000565047 ANKRD7Q92527 254 aa14.1□□□□□ -0.15
CLN3-213ENST00000565047 PYCR2Q96C36 320 aa14.1□□□□□ -0.15
CLN3-213ENST00000565047 FBXL8Q96CD0 374 aa14.1□□□□□ -0.15
CLN3-213ENST00000565047 LHPPQ9H008 270 aa14.1□□□□□ -0.15
CLN3-213ENST00000565047 MKKSQ9NPJ1 570 aaPredicted RBP14.1□□□□□ -0.15
CLN3-213ENST00000565047 SLAMF7Q9NQ25 335 aa14.1□□□□□ -0.15
CLN3-213ENST00000565047 C14orf105Q9NVL8 296 aa14.1□□□□□ -0.15
CLN3-213ENST00000565047 GRHL1Q9NZI5 618 aa14.1□□□□□ -0.15
CLN3-213ENST00000565047 NOVA2Q9UNW9 492 aaKnown RBP14.1□□□□□ -0.15
CLN3-213ENST00000565047 NTNG1Q9Y2I2 539 aa14.1□□□□□ -0.15
CLN3-213ENST00000565047 IGHV1-45A0A0A0MS14 117 aa14.09□□□□□ -0.15
CLN3-213ENST00000565047 PRPF4O43172 522 aaKnown RBP eCLIP14.09□□□□□ -0.15
CLN3-213ENST00000565047 VPS4BO75351 444 aa14.09□□□□□ -0.15
CLN3-213ENST00000565047 KLHL18O94889 574 aa14.09□□□□□ -0.15
CLN3-213ENST00000565047 NSA2O95478 260 aaKnown RBP14.09□□□□□ -0.15
CLN3-213ENST00000565047 ENO2P09104 434 aaPredicted RBP14.09□□□□□ -0.15
CLN3-213ENST00000565047 CDH1P12830 882 aa14.09□□□□□ -0.15
CLN3-213ENST00000565047 ACPPP15309 386 aa14.09□□□□□ -0.15
CLN3-213ENST00000565047 SOX11P35716 441 aa14.09□□□□□ -0.15
CLN3-213ENST00000565047 PDAP1Q13442 181 aaKnown RBP14.09□□□□□ -0.15
CLN3-213ENST00000565047 NDUFAF7Q7L592 441 aa14.09□□□□□ -0.15
CLN3-213ENST00000565047 STRA8Q7Z7C7 330 aa14.09□□□□□ -0.15
CLN3-213ENST00000565047 CEP97Q8IW35 865 aa14.09□□□□□ -0.15
CLN3-213ENST00000565047 AFAP1L2Q8N4X5 818 aa14.09□□□□□ -0.15
CLN3-213ENST00000565047 KCT2Q8NC54 265 aa14.09□□□□□ -0.15
CLN3-213ENST00000565047 PPP4R1Q8TF05 950 aa14.09□□□□□ -0.15
CLN3-213ENST00000565047 ANKRD49Q8WVL7 239 aa14.09□□□□□ -0.15
CLN3-213ENST00000565047 IMMP1LQ96LU5 166 aa14.09□□□□□ -0.15
CLN3-213ENST00000565047 ERP44Q9BS26 406 aa14.09□□□□□ -0.15
CLN3-213ENST00000565047 ZNF160Q9HCG1 818 aa14.09□□□□□ -0.15
CLN3-213ENST00000565047 ARL15Q9NXU5 204 aa14.09□□□□□ -0.15
CLN3-213ENST00000565047 VPS4AQ9UN37 437 aa14.09□□□□□ -0.15
CLN3-213ENST00000565047 DOPEY2Q9Y3R5 2298 aa14.08□□□□□ -0.15
CLN3-213ENST00000565047 CTAGE15A4D2H0 777 aa14.08□□□□□ -0.16
CLN3-213ENST00000565047 FAM187AA6NFU0 413 aa14.08□□□□□ -0.16
CLN3-213ENST00000565047 CXorf49A8MYA2 514 aaPredicted RBP14.08□□□□□ -0.16
CLN3-213ENST00000565047 CDC7O00311 574 aa14.08□□□□□ -0.16
CLN3-213ENST00000565047 RAD51CO43502 376 aa14.08□□□□□ -0.16
CLN3-213ENST00000565047 JRKO75564 520 aa14.08□□□□□ -0.16
CLN3-213ENST00000565047 PIAS1O75925 651 aa14.08□□□□□ -0.16
CLN3-213ENST00000565047 CBX6O95503 412 aa14.08□□□□□ -0.16
CLN3-213ENST00000565047 HIST1H2AGP0C0S8 130 aaPredicted RBP14.08□□□□□ -0.16
CLN3-213ENST00000565047 HIST1H2ADP20671 130 aa14.08□□□□□ -0.16
CLN3-213ENST00000565047 ZNF460Q14592 562 aa14.08□□□□□ -0.16
CLN3-213ENST00000565047 PCOLCEQ15113 449 aa14.08□□□□□ -0.16
CLN3-213ENST00000565047 NDUFA9Q16795 377 aa14.08□□□□□ -0.16
CLN3-213ENST00000565047 AGAP7PQ5VUJ5 663 aa14.08□□□□□ -0.16
CLN3-213ENST00000565047 CAPN13Q6MZZ7 669 aaPredicted RBP14.08□□□□□ -0.16
CLN3-213ENST00000565047 CYS1Q717R9 158 aa14.08□□□□□ -0.16
CLN3-213ENST00000565047 CTAGE6Q86UF2 777 aa14.08□□□□□ -0.16
CLN3-213ENST00000565047 PALM2Q8IXS6 379 aa14.08□□□□□ -0.16
CLN3-213ENST00000565047 IQCKQ8N0W5 287 aa14.08□□□□□ -0.16
CLN3-213ENST00000565047 C17orf53Q8N3J3 647 aaPredicted RBP14.08□□□□□ -0.16
CLN3-213ENST00000565047 ZADH2Q8N4Q0 377 aa14.08□□□□□ -0.16
CLN3-213ENST00000565047 CISD2Q8N5K1 135 aaKnown RBP14.08□□□□□ -0.16
CLN3-213ENST00000565047 EFCAB3Q8N7B9 438 aa14.08□□□□□ -0.16
CLN3-213ENST00000565047 MFSD9Q8NBP5 474 aa14.08□□□□□ -0.16
CLN3-213ENST00000565047 ZNF740Q8NDX6 193 aa14.08□□□□□ -0.16
CLN3-213ENST00000565047 MOCOSQ96EN8 888 aa14.08□□□□□ -0.16
CLN3-213ENST00000565047 THOC3Q96J01 351 aaKnown RBP14.08□□□□□ -0.16
CLN3-213ENST00000565047 HIST1H2AHQ96KK5 128 aa14.08□□□□□ -0.16
CLN3-213ENST00000565047 AGAP4Q96P64 663 aa14.08□□□□□ -0.16
CLN3-213ENST00000565047 LMF1Q96S06 567 aa14.08□□□□□ -0.16
CLN3-213ENST00000565047 HIST1H2AJQ99878 128 aa14.08□□□□□ -0.16
CLN3-213ENST00000565047 WDR77Q9BQA1 342 aaPredicted RBP14.08□□□□□ -0.16
CLN3-213ENST00000565047 HAUS8Q9BT25 410 aa14.08□□□□□ -0.16
CLN3-213ENST00000565047 H2AFJQ9BTM1 129 aa14.08□□□□□ -0.16
CLN3-213ENST00000565047 ZNF700Q9H0M5 742 aa14.08□□□□□ -0.16
CLN3-213ENST00000565047 SPNS1Q9H2V7 528 aa14.08□□□□□ -0.16
CLN3-213ENST00000565047 ASF1BQ9NVP2 202 aa14.08□□□□□ -0.16
CLN3-213ENST00000565047 WHRNQ9P202 907 aa14.08□□□□□ -0.16
CLN3-213ENST00000565047 ZFATQ9P243 1243 aa14.08□□□□□ -0.16
CLN3-213ENST00000565047 SLC22A7Q9Y694 548 aa14.08□□□□□ -0.16
CLN3-213ENST00000565047 USP9YO00507 2555 aaPredicted RBP14.08□□□□□ -0.16
CLN3-213ENST00000565047 FAM95CA0A1B0GW59 222 aa14.07□□□□□ -0.16
CLN3-213ENST00000565047 MAP2K7O14733 419 aa14.07□□□□□ -0.16
CLN3-213ENST00000565047 PCDH17O14917 1159 aa14.07□□□□□ -0.16
CLN3-213ENST00000565047 SEMA7AO75326 666 aa14.07□□□□□ -0.16
CLN3-213ENST00000565047 SERPINA7P05543 415 aa14.07□□□□□ -0.16
CLN3-213ENST00000565047 PRR35P0CG20 571 aa14.07□□□□□ -0.16
CLN3-213ENST00000565047 VARSP26640 1264 aaKnown RBP14.07□□□□□ -0.16
CLN3-213ENST00000565047 MRPL49Q13405 166 aaKnown RBP14.07□□□□□ -0.16
CLN3-213ENST00000565047 CATSPEREQ5SY80 951 aa14.07□□□□□ -0.16
CLN3-213ENST00000565047 ASPGQ86U10 573 aa14.07□□□□□ -0.16
CLN3-213ENST00000565047 ZBED8Q8IZ13 594 aa14.07□□□□□ -0.16
CLN3-213ENST00000565047 CAMKVQ8NCB2 501 aa14.07□□□□□ -0.16
CLN3-213ENST00000565047 SLC13A3Q8WWT9 602 aa14.07□□□□□ -0.16
CLN3-213ENST00000565047 TM9SF4Q92544 642 aa14.07□□□□□ -0.16
CLN3-213ENST00000565047 NEIL2Q969S2 332 aa14.07□□□□□ -0.16
CLN3-213ENST00000565047 VPS50Q96JG6 964 aa14.07□□□□□ -0.16
CLN3-213ENST00000565047 FAM129AQ9BZQ8 928 aa14.07□□□□□ -0.16
CLN3-213ENST00000565047 VN1R1Q9GZP7 353 aa14.07□□□□□ -0.16
CLN3-213ENST00000565047 RHOJQ9H4E5 214 aa14.07□□□□□ -0.16
CLN3-213ENST00000565047 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP14.07□□□□□ -0.16
CLN3-213ENST00000565047 NSG1A0A0A6YYJ2 146 aa14.06□□□□□ -0.16
CLN3-213ENST00000565047 TRBC2A0A5B9 178 aa14.06□□□□□ -0.16
CLN3-213ENST00000565047 OR2W5A6NFC9 320 aa14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms