RNA–Protein interactions for RNA: ENST00000564096.1

CLK3-214, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 805 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-214ENST00000564096 GFERP55789 205 aa12.29□□□□□ -0.44
CLK3-214ENST00000564096 STX1BP61266 288 aa12.29□□□□□ -0.44
CLK3-214ENST00000564096 RGS1Q08116 209 aa12.29□□□□□ -0.44
CLK3-214ENST00000564096 TGM3Q08188 693 aa12.29□□□□□ -0.44
CLK3-214ENST00000564096 CYP4F3Q08477 520 aa12.29□□□□□ -0.44
CLK3-214ENST00000564096 SMU1Q2TAY7 513 aa12.29□□□□□ -0.44
CLK3-214ENST00000564096 SPIN4Q56A73 249 aa12.29□□□□□ -0.44
CLK3-214ENST00000564096 ZC3H12BQ5HYM0 836 aaKnown RBP12.29□□□□□ -0.44
CLK3-214ENST00000564096 METTL21CQ5VZV1 264 aa12.29□□□□□ -0.44
CLK3-214ENST00000564096 FIGLAQ6QHK4 219 aa12.29□□□□□ -0.44
CLK3-214ENST00000564096 DBX2Q6ZNG2 339 aa12.29□□□□□ -0.44
CLK3-214ENST00000564096 FAM92BQ6ZTR7 304 aa12.29□□□□□ -0.44
CLK3-214ENST00000564096 RNF44Q7L0R7 432 aa12.29□□□□□ -0.44
CLK3-214ENST00000564096 PRSS42Q7Z5A4 293 aa12.29□□□□□ -0.44
CLK3-214ENST00000564096 KMT5CQ86Y97 462 aa12.29□□□□□ -0.44
CLK3-214ENST00000564096 PARP9Q8IXQ6 854 aa12.29□□□□□ -0.44
CLK3-214ENST00000564096 MFSD9Q8NBP5 474 aa12.29□□□□□ -0.44
CLK3-214ENST00000564096 TRPV3Q8NET8 790 aa12.29□□□□□ -0.44
CLK3-214ENST00000564096 CMTM7Q96FZ5 175 aa12.29□□□□□ -0.44
CLK3-214ENST00000564096 TCTN2Q96GX1 697 aa12.29□□□□□ -0.44
CLK3-214ENST00000564096 METTL2AQ96IZ6 378 aaKnown RBP12.29□□□□□ -0.44
CLK3-214ENST00000564096 HBEGFQ99075 208 aa12.29□□□□□ -0.44
CLK3-214ENST00000564096 MTERF1Q99551 399 aaKnown RBP12.29□□□□□ -0.44
CLK3-214ENST00000564096 CDC6Q99741 560 aa12.29□□□□□ -0.44
CLK3-214ENST00000564096 NLNQ9BYT8 704 aa12.29□□□□□ -0.44
CLK3-214ENST00000564096 ACPTQ9BZG2 426 aa12.29□□□□□ -0.44
CLK3-214ENST00000564096 SPNS1Q9H2V7 528 aa12.29□□□□□ -0.44
CLK3-214ENST00000564096 RHBGQ9H310 441 aa12.29□□□□□ -0.44
CLK3-214ENST00000564096 WDR55Q9H6Y2 383 aaPredicted RBP12.29□□□□□ -0.44
CLK3-214ENST00000564096 KCNK13Q9HB14 408 aa12.29□□□□□ -0.44
CLK3-214ENST00000564096 LRTM1Q9HBL6 345 aa12.29□□□□□ -0.44
CLK3-214ENST00000564096 ZFP69BQ9UJL9 534 aa12.29□□□□□ -0.44
CLK3-214ENST00000564096 SLC12A4Q9UP95 1085 aa12.29□□□□□ -0.44
CLK3-214ENST00000564096 BTBD3Q9Y2F9 522 aa12.29□□□□□ -0.44
CLK3-214ENST00000564096 TMED5Q9Y3A6 229 aa12.29□□□□□ -0.44
CLK3-214ENST00000564096 PTGDR2Q9Y5Y4 395 aa12.29□□□□□ -0.44
CLK3-214ENST00000564096 ATP6AP2A0A1C7CYW4 349 aa12.28□□□□□ -0.44
CLK3-214ENST00000564096 FEZF1A0PJY2 475 aa12.28□□□□□ -0.44
CLK3-214ENST00000564096 PROB1E7EW31 1015 aa12.28□□□□□ -0.44
CLK3-214ENST00000564096 NPIPB8E9PQR5 432 aa12.28□□□□□ -0.44
CLK3-214ENST00000564096 CDX4O14627 284 aaPredicted RBP12.28□□□□□ -0.44
CLK3-214ENST00000564096 NDUFS4O43181 175 aa12.28□□□□□ -0.44
CLK3-214ENST00000564096 ATP6AP2O75787 350 aa12.28□□□□□ -0.44
CLK3-214ENST00000564096 MYO1DO94832 1006 aa12.28□□□□□ -0.44
CLK3-214ENST00000564096 SEMA3DO95025 777 aa12.28□□□□□ -0.44
CLK3-214ENST00000564096 ZBTB11O95625 1053 aaPredicted RBP12.28□□□□□ -0.44
CLK3-214ENST00000564096 C9P02748 559 aa12.28□□□□□ -0.44
CLK3-214ENST00000564096 MYF5P13349 255 aa12.28□□□□□ -0.44
CLK3-214ENST00000564096 ACPPP15309 386 aa12.28□□□□□ -0.44
CLK3-214ENST00000564096 PCSK2P16519 638 aa12.28□□□□□ -0.44
CLK3-214ENST00000564096 PRPH2P23942 346 aa12.28□□□□□ -0.44
CLK3-214ENST00000564096 ACP1P24666 158 aa12.28□□□□□ -0.44
CLK3-214ENST00000564096 CSF2RBP32927 897 aa12.28□□□□□ -0.44
CLK3-214ENST00000564096 BCL6P41182 706 aa12.28□□□□□ -0.44
CLK3-214ENST00000564096 NEK2P51955 445 aa12.28□□□□□ -0.44
CLK3-214ENST00000564096 RAP1GDS1P52306 607 aa12.28□□□□□ -0.44
CLK3-214ENST00000564096 STXBP1P61764 594 aaKnown RBP12.28□□□□□ -0.44
CLK3-214ENST00000564096 PPP1CAP62136 330 aa12.28□□□□□ -0.44
CLK3-214ENST00000564096 ERVK-8P63133 956 aa12.28□□□□□ -0.44
CLK3-214ENST00000564096 RPL38P63173 70 aaKnown RBP12.28□□□□□ -0.44
CLK3-214ENST00000564096 CYP4F2P78329 520 aa12.28□□□□□ -0.44
CLK3-214ENST00000564096 SQSTM1Q13501 440 aa12.28□□□□□ -0.44
CLK3-214ENST00000564096 LSM12Q3MHD2 195 aaKnown RBP12.28□□□□□ -0.44
CLK3-214ENST00000564096 GALNTL6Q49A17 601 aa12.28□□□□□ -0.44
CLK3-214ENST00000564096 SPDYAQ5MJ70 313 aa12.28□□□□□ -0.44
CLK3-214ENST00000564096 PERM1Q5SV97 790 aa12.28□□□□□ -0.44
CLK3-214ENST00000564096 NKAIN2Q5VXU1 208 aa12.28□□□□□ -0.44
CLK3-214ENST00000564096 OGFOD2Q6N063 350 aa12.28□□□□□ -0.44
CLK3-214ENST00000564096 SCIMPQ6UWF3 145 aa12.28□□□□□ -0.44
CLK3-214ENST00000564096 SPATA19Q7Z5L4 167 aa12.28□□□□□ -0.44
CLK3-214ENST00000564096 ASPGQ86U10 573 aa12.28□□□□□ -0.44
CLK3-214ENST00000564096 FAM20CQ8IXL6 584 aa12.28□□□□□ -0.44
CLK3-214ENST00000564096 FAM9CQ8IZT9 166 aa12.28□□□□□ -0.44
CLK3-214ENST00000564096 FNDC5Q8NAU1 212 aa12.28□□□□□ -0.44
CLK3-214ENST00000564096 ZNF740Q8NDX6 193 aa12.28□□□□□ -0.44
CLK3-214ENST00000564096 N4BP2L2Q92802 583 aaPredicted RBP12.28□□□□□ -0.44
CLK3-214ENST00000564096 MTFMTQ96DP5 389 aaKnown RBP12.28□□□□□ -0.44
CLK3-214ENST00000564096 PRR11Q96HE9 360 aaPredicted RBP12.28□□□□□ -0.44
CLK3-214ENST00000564096 TRAPPC9Q96Q05 1148 aa12.28□□□□□ -0.44
CLK3-214ENST00000564096 LRRC37BQ96QE4 947 aa12.28□□□□□ -0.44
CLK3-214ENST00000564096 OR52B2Q96RD2 323 aa12.28□□□□□ -0.44
CLK3-214ENST00000564096 CHRNA10Q9GZZ6 450 aa12.28□□□□□ -0.44
CLK3-214ENST00000564096 LRRN3Q9H3W5 708 aa12.28□□□□□ -0.44
CLK3-214ENST00000564096 AKTIPQ9H8T0 292 aa12.28□□□□□ -0.44
CLK3-214ENST00000564096 FANCEQ9HB96 536 aa12.28□□□□□ -0.44
CLK3-214ENST00000564096 PDE7BQ9NP56 450 aa12.28□□□□□ -0.44
CLK3-214ENST00000564096 FARSBQ9NSD9 589 aaKnown RBP12.28□□□□□ -0.44
CLK3-214ENST00000564096 C1orf109Q9NX04 203 aa12.28□□□□□ -0.44
CLK3-214ENST00000564096 AHSPQ9NZD4 102 aa12.28□□□□□ -0.44
CLK3-214ENST00000564096 NOP53Q9NZM5 478 aaKnown RBP12.28□□□□□ -0.44
CLK3-214ENST00000564096 ZKSCAN7Q9P0L1 754 aaPredicted RBP12.28□□□□□ -0.44
CLK3-214ENST00000564096 VPS29Q9UBQ0 182 aa12.28□□□□□ -0.44
CLK3-214ENST00000564096 KLHL20Q9Y2M5 609 aa12.28□□□□□ -0.44
CLK3-214ENST00000564096 PCDHGA4Q9Y5G9 962 aa12.28□□□□□ -0.44
CLK3-214ENST00000564096 AP1M2Q9Y6Q5 423 aa12.28□□□□□ -0.44
CLK3-214ENST00000564096 COL5A1P20908 1838 aaPredicted RBP12.27□□□□□ -0.44
CLK3-214ENST00000564096 SDK1Q7Z5N4 2213 aa12.27□□□□□ -0.44
CLK3-214ENST00000564096 CACNA1HO95180 2353 aa12.27□□□□□ -0.44
CLK3-214ENST00000564096 TDRD6O60522 2096 aaKnown RBP12.27□□□□□ -0.45
CLK3-214ENST00000564096 URADA6NGE7 173 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 112.7 ms