RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 KRT78Q8N1N4 520 aa12.41□□□□□ -0.42
NEDD8-208ENST00000560427 SNX31Q8N9S9 440 aa12.41□□□□□ -0.42
NEDD8-208ENST00000560427 CT55Q8WUE5 264 aa12.41□□□□□ -0.42
NEDD8-208ENST00000560427 MR1Q95460 341 aa12.41□□□□□ -0.42
NEDD8-208ENST00000560427 FKBP10Q96AY3 582 aa12.41□□□□□ -0.42
NEDD8-208ENST00000560427 TM4SF19Q96DZ7 209 aa12.41□□□□□ -0.42
NEDD8-208ENST00000560427 PTCD3Q96EY7 689 aaKnown RBP12.41□□□□□ -0.42
NEDD8-208ENST00000560427 NT5DC2Q9H857 520 aa12.41□□□□□ -0.42
NEDD8-208ENST00000560427 CDC14AQ9UNH5 594 aa12.41□□□□□ -0.42
NEDD8-208ENST00000560427 RUVBL1Q9Y265 456 aaKnown RBP12.41□□□□□ -0.42
NEDD8-208ENST00000560427 SMIM23A6NLE4 172 aa12.4□□□□□ -0.42
NEDD8-208ENST00000560427 ZNF891A8MT65 544 aaPredicted RBP12.4□□□□□ -0.42
NEDD8-208ENST00000560427 TK2O00142 265 aa12.4□□□□□ -0.42
NEDD8-208ENST00000560427 H2AFYO75367 372 aaKnown RBP12.4□□□□□ -0.42
NEDD8-208ENST00000560427 ALBP02768 609 aa12.4□□□□□ -0.42
NEDD8-208ENST00000560427 EIF2S1P05198 315 aaKnown RBP12.4□□□□□ -0.42
NEDD8-208ENST00000560427 CTSBP07858 339 aa12.4□□□□□ -0.42
NEDD8-208ENST00000560427 EPB42P16452 691 aa12.4□□□□□ -0.42
NEDD8-208ENST00000560427 TCN2P20062 427 aa12.4□□□□□ -0.42
NEDD8-208ENST00000560427 TAC1P20366 129 aa12.4□□□□□ -0.42
NEDD8-208ENST00000560427 HPDP32754 393 aaPredicted RBP12.4□□□□□ -0.42
NEDD8-208ENST00000560427 CASP2P42575 452 aa12.4□□□□□ -0.42
NEDD8-208ENST00000560427 CCT5P48643 541 aa12.4□□□□□ -0.42
NEDD8-208ENST00000560427 RPS15P62841 145 aaKnown RBP12.4□□□□□ -0.42
NEDD8-208ENST00000560427 LAPTM5Q13571 262 aa12.4□□□□□ -0.42
NEDD8-208ENST00000560427 NCF4Q15080 339 aa12.4□□□□□ -0.42
NEDD8-208ENST00000560427 FAM198BQ6UWH4 519 aa12.4□□□□□ -0.42
NEDD8-208ENST00000560427 TTLL10Q6ZVT0 673 aa12.4□□□□□ -0.42
NEDD8-208ENST00000560427 VN1R4Q7Z5H5 301 aa12.4□□□□□ -0.42
NEDD8-208ENST00000560427 VASH2Q86V25 355 aa12.4□□□□□ -0.42
NEDD8-208ENST00000560427 PLD3Q8IV08 490 aa12.4□□□□□ -0.42
NEDD8-208ENST00000560427 ARHGEF39Q8N4T4 335 aa12.4□□□□□ -0.42
NEDD8-208ENST00000560427 PTGR2Q8N8N7 351 aaPredicted RBP12.4□□□□□ -0.42
NEDD8-208ENST00000560427 TRPV3Q8NET8 790 aa12.4□□□□□ -0.42
NEDD8-208ENST00000560427 OR2W6PQ8NHA6 318 aa12.4□□□□□ -0.42
NEDD8-208ENST00000560427 UBE2E3Q969T4 207 aa12.4□□□□□ -0.42
NEDD8-208ENST00000560427 C10orf90Q96M02 699 aa12.4□□□□□ -0.42
NEDD8-208ENST00000560427 CHST8Q9H2A9 424 aa12.4□□□□□ -0.42
NEDD8-208ENST00000560427 ZNF358Q9NW07 568 aa12.4□□□□□ -0.42
NEDD8-208ENST00000560427 WDR70Q9NW82 654 aa12.4□□□□□ -0.42
NEDD8-208ENST00000560427 MKS1Q9NXB0 559 aa12.4□□□□□ -0.42
NEDD8-208ENST00000560427 CPSF2Q9P2I0 782 aaKnown RBP12.4□□□□□ -0.42
NEDD8-208ENST00000560427 DHCR7Q9UBM7 475 aaKnown RBP12.4□□□□□ -0.42
NEDD8-208ENST00000560427 ZFP69BQ9UJL9 534 aa12.4□□□□□ -0.42
NEDD8-208ENST00000560427 PADI2Q9Y2J8 665 aa12.4□□□□□ -0.42
NEDD8-208ENST00000560427 FEZF1A0PJY2 475 aa12.39□□□□□ -0.43
NEDD8-208ENST00000560427 URADA6NGE7 173 aa12.39□□□□□ -0.43
NEDD8-208ENST00000560427 GOLGA8RI6L899 631 aa12.39□□□□□ -0.43
NEDD8-208ENST00000560427 E2F3O00716 465 aa12.39□□□□□ -0.43
NEDD8-208ENST00000560427 P2RX6O15547 441 aa12.39□□□□□ -0.43
NEDD8-208ENST00000560427 EFSO43281 561 aa12.39□□□□□ -0.43
NEDD8-208ENST00000560427 OR1F1O43749 312 aa12.39□□□□□ -0.43
NEDD8-208ENST00000560427 UGDHO60701 494 aa12.39□□□□□ -0.43
NEDD8-208ENST00000560427 EPORP19235 508 aa12.39□□□□□ -0.43
NEDD8-208ENST00000560427 PTPN4P29074 926 aa12.39□□□□□ -0.43
NEDD8-208ENST00000560427 SERPINB1P30740 379 aa12.39□□□□□ -0.43
NEDD8-208ENST00000560427 CRHR1P34998 444 aa12.39□□□□□ -0.43
NEDD8-208ENST00000560427 AGTR2P50052 363 aa12.39□□□□□ -0.43
NEDD8-208ENST00000560427 SKP1P63208 163 aa12.39□□□□□ -0.43
NEDD8-208ENST00000560427 IRF8Q02556 426 aa12.39□□□□□ -0.43
NEDD8-208ENST00000560427 RGS1Q08116 209 aa12.39□□□□□ -0.43
NEDD8-208ENST00000560427 SLBPQ14493 270 aaKnown RBP eCLIP12.39□□□□□ -0.43
NEDD8-208ENST00000560427 HIST2H2ACQ16777 129 aaPredicted RBP12.39□□□□□ -0.43
NEDD8-208ENST00000560427 HKDC1Q2TB90 917 aa12.39□□□□□ -0.43
NEDD8-208ENST00000560427 CCDC153Q494R4 210 aa12.39□□□□□ -0.43
NEDD8-208ENST00000560427 NKAIN1Q4KMZ8 207 aa12.39□□□□□ -0.43
NEDD8-208ENST00000560427 XKR6Q5GH73 641 aa12.39□□□□□ -0.43
NEDD8-208ENST00000560427 HIST2H2AA3Q6FI13 130 aa12.39□□□□□ -0.43
NEDD8-208ENST00000560427 TMEM214Q6NUQ4 689 aaKnown RBP12.39□□□□□ -0.43
NEDD8-208ENST00000560427 TMIGD1Q6UXZ0 262 aa12.39□□□□□ -0.43
NEDD8-208ENST00000560427 SH2D5Q6ZV89 423 aa12.39□□□□□ -0.43
NEDD8-208ENST00000560427 SYVN1Q86TM6 617 aa12.39□□□□□ -0.43
NEDD8-208ENST00000560427 NT5CQ8TCD5 201 aa12.39□□□□□ -0.43
NEDD8-208ENST00000560427 HNRNPLLQ8WVV9 542 aaKnown RBP12.39□□□□□ -0.43
NEDD8-208ENST00000560427 SLC13A3Q8WWT9 602 aa12.39□□□□□ -0.43
NEDD8-208ENST00000560427 STARD8Q92502 1023 aa12.39□□□□□ -0.43
NEDD8-208ENST00000560427 ESAMQ96AP7 390 aa12.39□□□□□ -0.43
NEDD8-208ENST00000560427 C1QTNF3Q9BXJ4 246 aa12.39□□□□□ -0.43
NEDD8-208ENST00000560427 DRC3Q9H069 523 aa12.39□□□□□ -0.43
NEDD8-208ENST00000560427 SLC26A1Q9H2B4 701 aa12.39□□□□□ -0.43
NEDD8-208ENST00000560427 PRORYQ9H606 182 aa12.39□□□□□ -0.43
NEDD8-208ENST00000560427 WDR54Q9H977 334 aa12.39□□□□□ -0.43
NEDD8-208ENST00000560427 SYNPO2LQ9H987 977 aa12.39□□□□□ -0.43
NEDD8-208ENST00000560427 STARD5Q9NSY2 213 aa12.39□□□□□ -0.43
NEDD8-208ENST00000560427 GEMIN8Q9NWZ8 242 aaKnown RBP12.39□□□□□ -0.43
NEDD8-208ENST00000560427 TMEM216Q9P0N5 145 aa12.39□□□□□ -0.43
NEDD8-208ENST00000560427 SENP1Q9P0U3 644 aa12.39□□□□□ -0.43
NEDD8-208ENST00000560427 IFT80Q9P2H3 777 aaPredicted RBP12.39□□□□□ -0.43
NEDD8-208ENST00000560427 GPN3Q9UHW5 284 aaPredicted RBP12.39□□□□□ -0.43
NEDD8-208ENST00000560427 NXT1Q9UKK6 140 aaKnown RBP12.39□□□□□ -0.43
NEDD8-208ENST00000560427 GRID1Q9ULK0 1009 aa12.39□□□□□ -0.43
NEDD8-208ENST00000560427 PLAAQ9Y263 795 aa12.39□□□□□ -0.43
NEDD8-208ENST00000560427 ASB1Q9Y576 335 aa12.39□□□□□ -0.43
NEDD8-208ENST00000560427 ANGPTL3Q9Y5C1 460 aa12.39□□□□□ -0.43
NEDD8-208ENST00000560427 SLC22A7Q9Y694 548 aa12.39□□□□□ -0.43
NEDD8-208ENST00000560427 PCM1Q15154 2024 aa12.38□□□□□ -0.43
NEDD8-208ENST00000560427 HEATR5BQ9P2D3 2071 aa12.38□□□□□ -0.43
NEDD8-208ENST00000560427 A0A1W2PPM1 405 aa12.38□□□□□ -0.43
NEDD8-208ENST00000560427 TLDC2A0PJX2 215 aa12.38□□□□□ -0.43
NEDD8-208ENST00000560427 H0YIG0 161 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms