RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 RPLP0P05388 317 aaKnown RBP3.24□□□□□ -1.89
VPS13C-208ENST00000559119 LINGO3P0C6S8 592 aa3.24□□□□□ -1.89
VPS13C-208ENST00000559119 ANPEPP15144 967 aa3.24□□□□□ -1.89
VPS13C-208ENST00000559119 SELEP16581 610 aa3.24□□□□□ -1.89
VPS13C-208ENST00000559119 EDNRAP25101 427 aa3.24□□□□□ -1.89
VPS13C-208ENST00000559119 ALDH1B1P30837 517 aa3.24□□□□□ -1.89
VPS13C-208ENST00000559119 DEKP35659 375 aaKnown RBP3.24□□□□□ -1.89
VPS13C-208ENST00000559119 CREB5Q02930 508 aa3.24□□□□□ -1.89
VPS13C-208ENST00000559119 PRKG2Q13237 762 aa3.24□□□□□ -1.89
VPS13C-208ENST00000559119 PCLAFQ15004 111 aa3.24□□□□□ -1.89
VPS13C-208ENST00000559119 SIX1Q15475 284 aaPredicted RBP3.24□□□□□ -1.89
VPS13C-208ENST00000559119 ZNF79Q15937 498 aa3.24□□□□□ -1.89
VPS13C-208ENST00000559119 TMEM266Q2M3C6 531 aa3.24□□□□□ -1.89
VPS13C-208ENST00000559119 LEMD1Q68G75 181 aa3.24□□□□□ -1.89
VPS13C-208ENST00000559119 CCDC70Q6NSX1 233 aa3.24□□□□□ -1.89
VPS13C-208ENST00000559119 SZRD1Q7Z422 152 aa3.24□□□□□ -1.89
VPS13C-208ENST00000559119 SERINC5Q86VE9 423 aa3.24□□□□□ -1.89
VPS13C-208ENST00000559119 SLC22A15Q8IZD6 547 aa3.24□□□□□ -1.89
VPS13C-208ENST00000559119 MAML2Q8IZL2 1156 aaPredicted RBP3.24□□□□□ -1.89
VPS13C-208ENST00000559119 RYBPQ8N488 228 aaPredicted RBP3.24□□□□□ -1.89
VPS13C-208ENST00000559119 MINDY1Q8N5J2 469 aa3.24□□□□□ -1.89
VPS13C-208ENST00000559119 RADILQ96JH8 1075 aa3.24□□□□□ -1.89
VPS13C-208ENST00000559119 KLHL5Q96PQ7 755 aa3.24□□□□□ -1.89
VPS13C-208ENST00000559119 TBC1D13Q9NVG8 400 aa3.24□□□□□ -1.89
VPS13C-208ENST00000559119 SLC24A2Q9UI40 661 aa3.24□□□□□ -1.89
VPS13C-208ENST00000559119 RNF150Q9ULK6 438 aa3.24□□□□□ -1.89
VPS13C-208ENST00000559119 AUP1Q9Y679 476 aa3.24□□□□□ -1.89
VPS13C-208ENST00000559119 GON4LQ3T8J9 2241 aa3.24□□□□□ -1.89
VPS13C-208ENST00000559119 RALGAPA1Q6GYQ0 2036 aa3.24□□□□□ -1.89
VPS13C-208ENST00000559119 ZCCHC6Q5VYS8 1495 aaKnown RBP3.23□□□□□ -1.89
VPS13C-208ENST00000559119 A0A1W2PQ72 361 aa3.23□□□□□ -1.89
VPS13C-208ENST00000559119 CASTOR2A6NHX0 329 aa3.23□□□□□ -1.89
VPS13C-208ENST00000559119 AGAP14A8MT82 685 aa3.23□□□□□ -1.89
VPS13C-208ENST00000559119 F8VVB4 439 aa3.23□□□□□ -1.89
VPS13C-208ENST00000559119 F8VWA3 439 aa3.23□□□□□ -1.89
VPS13C-208ENST00000559119 BAIAP3O94812 1187 aa3.23□□□□□ -1.89
VPS13C-208ENST00000559119 ACSL3O95573 720 aa3.23□□□□□ -1.89
VPS13C-208ENST00000559119 MT-ND1P03886 318 aa3.23□□□□□ -1.89
VPS13C-208ENST00000559119 GPR183P32249 361 aa3.23□□□□□ -1.89
VPS13C-208ENST00000559119 LHX1P48742 406 aa3.23□□□□□ -1.89
VPS13C-208ENST00000559119 WRNQ14191 1432 aaPredicted RBP eCLIP3.23□□□□□ -1.89
VPS13C-208ENST00000559119 GBP7Q8N8V2 638 aaPredicted RBP3.23□□□□□ -1.89
VPS13C-208ENST00000559119 CFAP61Q8NHU2 1237 aa3.23□□□□□ -1.89
VPS13C-208ENST00000559119 KCNE4Q8WWG9 221 aa3.23□□□□□ -1.89
VPS13C-208ENST00000559119 TSACCQ96A04 125 aaPredicted RBP3.23□□□□□ -1.89
VPS13C-208ENST00000559119 PTERQ96BW5 349 aa3.23□□□□□ -1.89
VPS13C-208ENST00000559119 TMX4Q9H1E5 349 aaPredicted RBP3.23□□□□□ -1.89
VPS13C-208ENST00000559119 GOLPH3LQ9H4A5 285 aa3.23□□□□□ -1.89
VPS13C-208ENST00000559119 CDH20Q9HBT6 801 aa3.23□□□□□ -1.89
VPS13C-208ENST00000559119 DDX25Q9UHL0 483 aaKnown RBP3.23□□□□□ -1.89
VPS13C-208ENST00000559119 NPHP3Q7Z494 1330 aa3.22□□□□□ -1.89
VPS13C-208ENST00000559119 POGZQ7Z3K3 1410 aa3.22□□□□□ -1.89
VPS13C-208ENST00000559119 A0A1B0GTH9 108 aa3.22□□□□□ -1.89
VPS13C-208ENST00000559119 K7ENM7 598 aa3.22□□□□□ -1.89
VPS13C-208ENST00000559119 CCL24O00175 119 aa3.22□□□□□ -1.89
VPS13C-208ENST00000559119 ZBED4O75132 1171 aa3.22□□□□□ -1.89
VPS13C-208ENST00000559119 RPS6KA5O75582 802 aa3.22□□□□□ -1.89
VPS13C-208ENST00000559119 SAGP10523 405 aaPredicted RBP3.22□□□□□ -1.89
VPS13C-208ENST00000559119 UBXN2AP68543 259 aa3.22□□□□□ -1.89
VPS13C-208ENST00000559119 NPTX1Q15818 432 aa3.22□□□□□ -1.89
VPS13C-208ENST00000559119 NTRK2Q16620 822 aa3.22□□□□□ -1.89
VPS13C-208ENST00000559119 DUSP5Q16690 384 aa3.22□□□□□ -1.89
VPS13C-208ENST00000559119 FAM106AQ4KMX7 169 aa3.22□□□□□ -1.89
VPS13C-208ENST00000559119 HSP90AB4PQ58FF6 505 aa3.22□□□□□ -1.89
VPS13C-208ENST00000559119 GORABQ5T7V8 394 aa3.22□□□□□ -1.89
VPS13C-208ENST00000559119 OR4C11Q6IEV9 310 aa3.22□□□□□ -1.89
VPS13C-208ENST00000559119 IL17RELQ6ZVW7 336 aa3.22□□□□□ -1.89
VPS13C-208ENST00000559119 HIPK1Q86Z02 1210 aa3.22□□□□□ -1.89
VPS13C-208ENST00000559119 RASGEF1AQ8N9B8 481 aa3.22□□□□□ -1.89
VPS13C-208ENST00000559119 PHYHIPLQ96FC7 376 aa3.22□□□□□ -1.89
VPS13C-208ENST00000559119 CHMP4AQ9BY43 222 aa3.22□□□□□ -1.89
VPS13C-208ENST00000559119 MRPL1Q9BYD6 325 aaKnown RBP3.22□□□□□ -1.89
VPS13C-208ENST00000559119 MYH16Q9H6N6 1097 aa3.22□□□□□ -1.89
VPS13C-208ENST00000559119 GSN-AS1Q9NRJ2 163 aa3.22□□□□□ -1.89
VPS13C-208ENST00000559119 PRMT7Q9NVM4 692 aaPredicted RBP3.22□□□□□ -1.89
VPS13C-208ENST00000559119 CRNNQ9UBG3 495 aaPredicted RBP3.22□□□□□ -1.89
VPS13C-208ENST00000559119 KLK11Q9UBX7 282 aa3.22□□□□□ -1.89
VPS13C-208ENST00000559119 TMEM129A0AVI4 362 aa3.21□□□□□ -1.9
VPS13C-208ENST00000559119 RPL37AP8A6NKH3 93 aa3.21□□□□□ -1.9
VPS13C-208ENST00000559119 CDX4O14627 284 aaPredicted RBP3.21□□□□□ -1.9
VPS13C-208ENST00000559119 TXNL1O43396 289 aa3.21□□□□□ -1.9
VPS13C-208ENST00000559119 RPL34P49207 117 aaKnown RBP3.21□□□□□ -1.9
VPS13C-208ENST00000559119 GSK3BP49841 420 aa3.21□□□□□ -1.9
VPS13C-208ENST00000559119 NAP1L1P55209 391 aaKnown RBP3.21□□□□□ -1.9
VPS13C-208ENST00000559119 OR1D5P58170 312 aa3.21□□□□□ -1.9
VPS13C-208ENST00000559119 IGLV3-21P80748 117 aaPredicted RBP3.21□□□□□ -1.9
VPS13C-208ENST00000559119 NONOQ15233 471 aaKnown RBP eCLIP3.21□□□□□ -1.9
VPS13C-208ENST00000559119 C2orf83Q53S99 150 aa3.21□□□□□ -1.9
VPS13C-208ENST00000559119 MARC1Q5VT66 337 aa3.21□□□□□ -1.9
VPS13C-208ENST00000559119 CYB5D1Q6P9G0 228 aa3.21□□□□□ -1.9
VPS13C-208ENST00000559119 RPAP2Q8IXW5 612 aaPredicted RBP3.21□□□□□ -1.9
VPS13C-208ENST00000559119 LRTM2Q8N967 370 aa3.21□□□□□ -1.9
VPS13C-208ENST00000559119 TSPAN14Q8NG11 270 aa3.21□□□□□ -1.9
VPS13C-208ENST00000559119 OR9Q2Q8NGE9 314 aa3.21□□□□□ -1.9
VPS13C-208ENST00000559119 OR4C15Q8NGM1 316 aa3.21□□□□□ -1.9
VPS13C-208ENST00000559119 PKNOX2Q96KN3 472 aa3.21□□□□□ -1.9
VPS13C-208ENST00000559119 TAAR6Q96RI8 345 aa3.21□□□□□ -1.9
VPS13C-208ENST00000559119 SLC2A11Q9BYW1 496 aa3.21□□□□□ -1.9
VPS13C-208ENST00000559119 STRADBQ9C0K7 418 aa3.21□□□□□ -1.9
VPS13C-208ENST00000559119 GIMAP4Q9NUV9 329 aa3.21□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms