RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 B3GNT7Q8NFL0 401 aa10.97□□□□□ -0.65
LDLR-208ENST00000558518 IL17RDQ8NFM7 739 aa10.97□□□□□ -0.65
LDLR-208ENST00000558518 BTBD2Q9BX70 525 aa10.97□□□□□ -0.65
LDLR-208ENST00000558518 LINC00597Q9H2U6 94 aa10.97□□□□□ -0.65
LDLR-208ENST00000558518 DYRK4Q9NR20 520 aa10.97□□□□□ -0.65
LDLR-208ENST00000558518 TMEM39AQ9NV64 488 aa10.97□□□□□ -0.65
LDLR-208ENST00000558518 FBXL12Q9NXK8 326 aa10.97□□□□□ -0.65
LDLR-208ENST00000558518 HCSTQ9UBK5 93 aa10.97□□□□□ -0.65
LDLR-208ENST00000558518 XIRP2A4UGR9 3374 aa10.97□□□□□ -0.65
LDLR-208ENST00000558518 CKAP5Q14008 2032 aa10.97□□□□□ -0.65
LDLR-208ENST00000558518 MEIOCA2RUB1 952 aa10.97□□□□□ -0.65
LDLR-208ENST00000558518 C12orf71A8MTZ7 269 aa10.97□□□□□ -0.65
LDLR-208ENST00000558518 M0QX08 132 aa10.97□□□□□ -0.65
LDLR-208ENST00000558518 SCO1O75880 301 aa10.97□□□□□ -0.65
LDLR-208ENST00000558518 GJB5O95377 273 aa10.97□□□□□ -0.65
LDLR-208ENST00000558518 IGLV3-25P01717 112 aa10.97□□□□□ -0.65
LDLR-208ENST00000558518 TRBC1P01850 177 aa10.97□□□□□ -0.65
LDLR-208ENST00000558518 RETP07949 1114 aa10.97□□□□□ -0.65
LDLR-208ENST00000558518 IL12RB1P42701 662 aa10.97□□□□□ -0.65
LDLR-208ENST00000558518 EXOC3L2Q2M3D2 409 aa10.97□□□□□ -0.65
LDLR-208ENST00000558518 PROX2Q3B8N5 592 aa10.97□□□□□ -0.65
LDLR-208ENST00000558518 IER5LQ5T953 404 aa10.97□□□□□ -0.65
LDLR-208ENST00000558518 UBE2R2Q712K3 238 aaPredicted RBP10.97□□□□□ -0.65
LDLR-208ENST00000558518 PLEKHH3Q7Z736 793 aa10.97□□□□□ -0.65
LDLR-208ENST00000558518 ABI3BPQ7Z7G0 1075 aa10.97□□□□□ -0.65
LDLR-208ENST00000558518 CHPFQ8IZ52 775 aa10.97□□□□□ -0.65
LDLR-208ENST00000558518 GHDCQ8N2G8 530 aa10.97□□□□□ -0.65
LDLR-208ENST00000558518 PIH1D2Q8WWB5 315 aa10.97□□□□□ -0.65
LDLR-208ENST00000558518 KCNJ9Q92806 393 aa10.97□□□□□ -0.65
LDLR-208ENST00000558518 CD244Q9BZW8 370 aa10.97□□□□□ -0.65
LDLR-208ENST00000558518 CRISPLD1Q9H336 500 aa10.97□□□□□ -0.65
LDLR-208ENST00000558518 CLMPQ9H6B4 373 aa10.97□□□□□ -0.65
LDLR-208ENST00000558518 TPT1P8Q9HAU6 139 aa10.97□□□□□ -0.65
LDLR-208ENST00000558518 PRDM5Q9NQX1 630 aaPredicted RBP10.97□□□□□ -0.65
LDLR-208ENST00000558518 VPS9D1Q9Y2B5 631 aa10.97□□□□□ -0.65
LDLR-208ENST00000558518 NYNRINQ9P2P1 1898 aaKnown RBP10.97□□□□□ -0.65
LDLR-208ENST00000558518 CNTRLQ7Z7A1 2325 aa10.96□□□□□ -0.65
LDLR-208ENST00000558518 ISPDA4D126 451 aa10.96□□□□□ -0.65
LDLR-208ENST00000558518 EIF2S1P05198 315 aaKnown RBP10.96□□□□□ -0.65
LDLR-208ENST00000558518 ANXA5P08758 320 aa10.96□□□□□ -0.65
LDLR-208ENST00000558518 UGT2B15P54855 530 aa10.96□□□□□ -0.65
LDLR-208ENST00000558518 IRF8Q02556 426 aa10.96□□□□□ -0.65
LDLR-208ENST00000558518 ACSM2AQ08AH3 577 aa10.96□□□□□ -0.65
LDLR-208ENST00000558518 CHIT1Q13231 466 aa10.96□□□□□ -0.65
LDLR-208ENST00000558518 FAM209AQ5JX71 171 aa10.96□□□□□ -0.65
LDLR-208ENST00000558518 ACSM2BQ68CK6 577 aa10.96□□□□□ -0.65
LDLR-208ENST00000558518 TIGD4Q8IY51 512 aa10.96□□□□□ -0.65
LDLR-208ENST00000558518 APH1BQ8WW43 257 aa10.96□□□□□ -0.65
LDLR-208ENST00000558518 CLEC2DQ9UHP7 191 aa10.96□□□□□ -0.65
LDLR-208ENST00000558518 NEUROG3Q9Y4Z2 214 aa10.96□□□□□ -0.65
LDLR-208ENST00000558518 MGAT4DA6NG13 374 aa10.96□□□□□ -0.65
LDLR-208ENST00000558518 EIF3FO00303 357 aaPredicted RBP10.96□□□□□ -0.65
LDLR-208ENST00000558518 ARHGEF9O43307 516 aa10.96□□□□□ -0.65
LDLR-208ENST00000558518 B4GALT3O60512 393 aa10.96□□□□□ -0.65
LDLR-208ENST00000558518 CDRT1O95170 752 aa10.96□□□□□ -0.65
LDLR-208ENST00000558518 PRLP01236 227 aa10.96□□□□□ -0.65
LDLR-208ENST00000558518 C9P02748 559 aa10.96□□□□□ -0.65
LDLR-208ENST00000558518 ESR1P03372 595 aa10.96□□□□□ -0.65
LDLR-208ENST00000558518 CLEC2LP0C7M8 214 aa10.96□□□□□ -0.65
LDLR-208ENST00000558518 ETFAP13804 333 aa10.96□□□□□ -0.65
LDLR-208ENST00000558518 PRKCAP17252 672 aa10.96□□□□□ -0.65
LDLR-208ENST00000558518 TNNI3P19429 210 aa10.96□□□□□ -0.65
LDLR-208ENST00000558518 DGKAP23743 735 aa10.96□□□□□ -0.65
LDLR-208ENST00000558518 IFNA8P32881 189 aa10.96□□□□□ -0.65
LDLR-208ENST00000558518 PTGER3P43115 390 aa10.96□□□□□ -0.65
LDLR-208ENST00000558518 HTR3AP46098 478 aa10.96□□□□□ -0.65
LDLR-208ENST00000558518 SUOXP51687 545 aa10.96□□□□□ -0.65
LDLR-208ENST00000558518 HOXC5Q00444 222 aa10.96□□□□□ -0.65
LDLR-208ENST00000558518 ZNF45Q02386 682 aa10.96□□□□□ -0.65
LDLR-208ENST00000558518 ABRQ12979 859 aa10.96□□□□□ -0.65
LDLR-208ENST00000558518 SPATS1Q496A3 300 aa10.96□□□□□ -0.65
LDLR-208ENST00000558518 GPR150Q8NGU9 434 aa10.96□□□□□ -0.65
LDLR-208ENST00000558518 OR2B2Q9GZK3 357 aa10.96□□□□□ -0.65
LDLR-208ENST00000558518 FBXO44Q9H4M3 255 aa10.96□□□□□ -0.65
LDLR-208ENST00000558518 DKK3Q9UBP4 350 aa10.96□□□□□ -0.65
LDLR-208ENST00000558518 DHRS7Q9Y394 339 aa10.96□□□□□ -0.65
LDLR-208ENST00000558518 A0A1B0GVC2 190 aa10.96□□□□□ -0.66
LDLR-208ENST00000558518 A6NIN4 97 aa10.96□□□□□ -0.66
LDLR-208ENST00000558518 CLCA1A8K7I4 914 aa10.96□□□□□ -0.66
LDLR-208ENST00000558518 AKR7A2O43488 359 aa10.96□□□□□ -0.66
LDLR-208ENST00000558518 ITGAMP11215 1152 aa10.96□□□□□ -0.66
LDLR-208ENST00000558518 ITGALP20701 1170 aa10.96□□□□□ -0.66
LDLR-208ENST00000558518 HNF4AP41235 474 aa10.96□□□□□ -0.66
LDLR-208ENST00000558518 CLCN7P51798 805 aa10.96□□□□□ -0.66
LDLR-208ENST00000558518 PTPN5P54829 565 aa10.96□□□□□ -0.66
LDLR-208ENST00000558518 TUBA1BP68363 451 aa10.96□□□□□ -0.66
LDLR-208ENST00000558518 ALDH6A1Q02252 535 aaKnown RBP10.96□□□□□ -0.66
LDLR-208ENST00000558518 CHRNA6Q15825 494 aa10.96□□□□□ -0.66
LDLR-208ENST00000558518 XKR6Q5GH73 641 aa10.96□□□□□ -0.66
LDLR-208ENST00000558518 ATG9BQ674R7 924 aa10.96□□□□□ -0.66
LDLR-208ENST00000558518 CAPN13Q6MZZ7 669 aaPredicted RBP10.96□□□□□ -0.66
LDLR-208ENST00000558518 PAQR6Q6TCH4 344 aa10.96□□□□□ -0.66
LDLR-208ENST00000558518 RFLNAQ6ZTI6 216 aa10.96□□□□□ -0.66
LDLR-208ENST00000558518 TUBA1AQ71U36 451 aa10.96□□□□□ -0.66
LDLR-208ENST00000558518 OTOP2Q7RTS6 562 aa10.96□□□□□ -0.66
LDLR-208ENST00000558518 NAGSQ8N159 534 aa10.96□□□□□ -0.66
LDLR-208ENST00000558518 ZBTB2Q8N680 514 aa10.96□□□□□ -0.66
LDLR-208ENST00000558518 OR6F1Q8NGZ6 308 aa10.96□□□□□ -0.66
LDLR-208ENST00000558518 POPDC3Q9HBV1 291 aa10.96□□□□□ -0.66
LDLR-208ENST00000558518 MAT2BQ9NZL9 334 aa10.96□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms