RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 COX20Q5RI15 118 aa11.93□□□□□ -0.5
LDLR-205ENST00000557933 CYP2U1Q7Z449 544 aa11.93□□□□□ -0.5
LDLR-205ENST00000557933 WDR53Q7Z5U6 358 aaPredicted RBP11.93□□□□□ -0.5
LDLR-205ENST00000557933 GLCCI1Q86VQ1 547 aa11.93□□□□□ -0.5
LDLR-205ENST00000557933 HS6ST3Q8IZP7 471 aa11.93□□□□□ -0.5
LDLR-205ENST00000557933 NAGSQ8N159 534 aa11.93□□□□□ -0.5
LDLR-205ENST00000557933 LILRA3Q8N6C8 439 aaPredicted RBP11.93□□□□□ -0.5
LDLR-205ENST00000557933 CELF5Q8N6W0 485 aaKnown RBP11.93□□□□□ -0.5
LDLR-205ENST00000557933 CEP19Q96LK0 163 aa11.93□□□□□ -0.5
LDLR-205ENST00000557933 FYTTD1Q96QD9 318 aaKnown RBP11.93□□□□□ -0.5
LDLR-205ENST00000557933 TSPAN18Q96SJ8 248 aa11.93□□□□□ -0.5
LDLR-205ENST00000557933 SH3GL1Q99961 368 aa11.93□□□□□ -0.5
LDLR-205ENST00000557933 C11orf16Q9NQ32 467 aa11.93□□□□□ -0.5
LDLR-205ENST00000557933 MS4A12Q9NXJ0 267 aa11.93□□□□□ -0.5
LDLR-205ENST00000557933 MALT1Q9UDY8 824 aa11.93□□□□□ -0.5
LDLR-205ENST00000557933 CLEC4EQ9ULY5 219 aa11.93□□□□□ -0.5
LDLR-205ENST00000557933 PCDHGB6Q9Y5F9 930 aa11.93□□□□□ -0.5
LDLR-205ENST00000557933 ANKRD34BA5PLL1 514 aa11.92□□□□□ -0.5
LDLR-205ENST00000557933 FAM220BPB1ANY3 271 aa11.92□□□□□ -0.5
LDLR-205ENST00000557933 COCHO43405 550 aa11.92□□□□□ -0.5
LDLR-205ENST00000557933 F11P03951 625 aa11.92□□□□□ -0.5
LDLR-205ENST00000557933 ASGR1P07306 291 aa11.92□□□□□ -0.5
LDLR-205ENST00000557933 ADORA3P0DMS8 318 aa11.92□□□□□ -0.5
LDLR-205ENST00000557933 FPR1P21462 350 aa11.92□□□□□ -0.5
LDLR-205ENST00000557933 WEE1P30291 646 aa11.92□□□□□ -0.5
LDLR-205ENST00000557933 PPP3CCP48454 512 aa11.92□□□□□ -0.5
LDLR-205ENST00000557933 SPIBQ01892 262 aa11.92□□□□□ -0.5
LDLR-205ENST00000557933 CACNG1Q06432 222 aa11.92□□□□□ -0.5
LDLR-205ENST00000557933 SPATS1Q496A3 300 aa11.92□□□□□ -0.5
LDLR-205ENST00000557933 TPGS1Q6ZTW0 290 aa11.92□□□□□ -0.5
LDLR-205ENST00000557933 PRSS48Q7RTY5 328 aa11.92□□□□□ -0.5
LDLR-205ENST00000557933 CALHM3Q86XJ0 350 aa11.92□□□□□ -0.5
LDLR-205ENST00000557933 ZZZ3Q8IYH5 903 aa11.92□□□□□ -0.5
LDLR-205ENST00000557933 PCSK9Q8NBP7 692 aaKnown RBP11.92□□□□□ -0.5
LDLR-205ENST00000557933 CD99L2Q8TCZ2 262 aa11.92□□□□□ -0.5
LDLR-205ENST00000557933 ZFYVE1Q9HBF4 777 aa11.92□□□□□ -0.5
LDLR-205ENST00000557933 FBXL12Q9NXK8 326 aa11.92□□□□□ -0.5
LDLR-205ENST00000557933 MUTYHQ9UIF7 546 aa11.92□□□□□ -0.5
LDLR-205ENST00000557933 FZD4Q9ULV1 537 aa11.92□□□□□ -0.5
LDLR-205ENST00000557933 SAMD4AQ9UPU9 718 aaKnown RBP11.92□□□□□ -0.5
LDLR-205ENST00000557933 NUMA1Q14980 2115 aa11.92□□□□□ -0.5
LDLR-205ENST00000557933 MAGEB17A8MXT2 336 aa11.92□□□□□ -0.5
LDLR-205ENST00000557933 TBL1XO60907 577 aa11.92□□□□□ -0.5
LDLR-205ENST00000557933 EPN2O95208 641 aa11.92□□□□□ -0.5
LDLR-205ENST00000557933 ITGAMP11215 1152 aa11.92□□□□□ -0.5
LDLR-205ENST00000557933 ETFAP13804 333 aa11.92□□□□□ -0.5
LDLR-205ENST00000557933 BPIP17213 487 aa11.92□□□□□ -0.5
LDLR-205ENST00000557933 GRK3P35626 688 aa11.92□□□□□ -0.5
LDLR-205ENST00000557933 OR2B6P58173 313 aa11.92□□□□□ -0.5
LDLR-205ENST00000557933 ATAD3CQ5T2N8 411 aa11.92□□□□□ -0.5
LDLR-205ENST00000557933 PAQR6Q6TCH4 344 aa11.92□□□□□ -0.5
LDLR-205ENST00000557933 UBE2R2Q712K3 238 aaPredicted RBP11.92□□□□□ -0.5
LDLR-205ENST00000557933 FAM124AQ86V42 546 aa11.92□□□□□ -0.5
LDLR-205ENST00000557933 ZSWIM9Q86XI8 627 aa11.92□□□□□ -0.5
LDLR-205ENST00000557933 APCDD1Q8J025 514 aa11.92□□□□□ -0.5
LDLR-205ENST00000557933 TRNT1Q96Q11 434 aaKnown RBP11.92□□□□□ -0.5
LDLR-205ENST00000557933 CDK5RAP1Q96SZ6 601 aaKnown RBP11.92□□□□□ -0.5
LDLR-205ENST00000557933 KCNH6Q9H252 994 aa11.92□□□□□ -0.5
LDLR-205ENST00000557933 TPT1P8Q9HAU6 139 aa11.92□□□□□ -0.5
LDLR-205ENST00000557933 TM9SF3Q9HD45 589 aa11.92□□□□□ -0.5
LDLR-205ENST00000557933 SNTG1Q9NSN8 517 aa11.92□□□□□ -0.5
LDLR-205ENST00000557933 PAQR5Q9NXK6 330 aaPredicted RBP11.92□□□□□ -0.5
LDLR-205ENST00000557933 PCDHB8Q9UN66 801 aa11.92□□□□□ -0.5
LDLR-205ENST00000557933 KNL1Q8NG31 2342 aa11.91□□□□□ -0.5
LDLR-205ENST00000557933 OR2AG2A6NM03 316 aa11.91□□□□□ -0.5
LDLR-205ENST00000557933 M0QX08 132 aa11.91□□□□□ -0.5
LDLR-205ENST00000557933 SLC28A1O00337 649 aa11.91□□□□□ -0.5
LDLR-205ENST00000557933 PCDH17O14917 1159 aa11.91□□□□□ -0.5
LDLR-205ENST00000557933 TPD52L2O43399 206 aaKnown RBP11.91□□□□□ -0.5
LDLR-205ENST00000557933 TPST2O60704 377 aa11.91□□□□□ -0.5
LDLR-205ENST00000557933 CCNDBP1O95273 360 aa11.91□□□□□ -0.5
LDLR-205ENST00000557933 ETHE1O95571 254 aa11.91□□□□□ -0.5
LDLR-205ENST00000557933 KRT6AP02538 564 aa11.91□□□□□ -0.5
LDLR-205ENST00000557933 KRT6BP04259 564 aa11.91□□□□□ -0.5
LDLR-205ENST00000557933 JUNDP17535 347 aa11.91□□□□□ -0.5
LDLR-205ENST00000557933 ATP5C1P36542 298 aaKnown RBP11.91□□□□□ -0.5
LDLR-205ENST00000557933 KRT6CP48668 564 aa11.91□□□□□ -0.5
LDLR-205ENST00000557933 MAPKAPK2P49137 400 aa11.91□□□□□ -0.5
LDLR-205ENST00000557933 STK19P49842 368 aaPredicted RBP11.91□□□□□ -0.5
LDLR-205ENST00000557933 UBE3AQ05086 875 aa11.91□□□□□ -0.5
LDLR-205ENST00000557933 ABHD18Q0P651 414 aa11.91□□□□□ -0.5
LDLR-205ENST00000557933 CHIT1Q13231 466 aa11.91□□□□□ -0.5
LDLR-205ENST00000557933 NFE2Q16621 373 aaPredicted RBP11.91□□□□□ -0.5
LDLR-205ENST00000557933 PLEKHG6Q3KR16 790 aa11.91□□□□□ -0.5
LDLR-205ENST00000557933 CCSMST1Q4G0I0 132 aa11.91□□□□□ -0.5
LDLR-205ENST00000557933 ATG9BQ674R7 924 aa11.91□□□□□ -0.5
LDLR-205ENST00000557933 NOXRED1Q6NXP6 359 aa11.91□□□□□ -0.5
LDLR-205ENST00000557933 CCDC80Q76M96 950 aa11.91□□□□□ -0.5
LDLR-205ENST00000557933 SERINC5Q86VE9 423 aa11.91□□□□□ -0.5
LDLR-205ENST00000557933 DTX3Q8N9I9 347 aa11.91□□□□□ -0.5
LDLR-205ENST00000557933 SAMD11Q96NU1 681 aa11.91□□□□□ -0.5
LDLR-205ENST00000557933 TCF25Q9BQ70 676 aa11.91□□□□□ -0.5
LDLR-205ENST00000557933 IMPAD1Q9NX62 359 aa11.91□□□□□ -0.5
LDLR-205ENST00000557933 CLEC2DQ9UHP7 191 aa11.91□□□□□ -0.5
LDLR-205ENST00000557933 DUSP12Q9UNI6 340 aa11.91□□□□□ -0.5
LDLR-205ENST00000557933 ILVBLA1L0T0 632 aa11.91□□□□□ -0.5
LDLR-205ENST00000557933 TNFRSF11BO00300 401 aa11.91□□□□□ -0.5
LDLR-205ENST00000557933 KDELR3O43731 214 aa11.91□□□□□ -0.5
LDLR-205ENST00000557933 DYRK3O43781 588 aa11.91□□□□□ -0.5
LDLR-205ENST00000557933 ERN1O75460 977 aaKnown RBP11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms