RNA–Protein interactions for RNA: ENST00000554079.1

SIX4-202, Transcript of SIX homeobox 4, humanhuman

TSL 1 (best)

Gene SIX4, Length 2,003 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4-202ENST00000554079 TCRBV16S1A1N1A0A5B0 115 aa9.25□□□□□ -0.93
SIX4-202ENST00000554079 CLCA1A8K7I4 914 aa9.25□□□□□ -0.93
SIX4-202ENST00000554079 SLC28A1O00337 649 aa9.25□□□□□ -0.93
SIX4-202ENST00000554079 DPYSL4O14531 572 aa9.25□□□□□ -0.93
SIX4-202ENST00000554079 PAGE1O75459 146 aa9.25□□□□□ -0.93
SIX4-202ENST00000554079 CLN5O75503 358 aa9.25□□□□□ -0.93
SIX4-202ENST00000554079 NPM3O75607 178 aaKnown RBP9.25□□□□□ -0.93
SIX4-202ENST00000554079 RPS6KA4O75676 772 aa9.25□□□□□ -0.93
SIX4-202ENST00000554079 POP4O95707 220 aaKnown RBP9.25□□□□□ -0.93
SIX4-202ENST00000554079 LPLP06858 475 aa9.25□□□□□ -0.93
SIX4-202ENST00000554079 STSP08842 583 aa9.25□□□□□ -0.93
SIX4-202ENST00000554079 NMBP08949 121 aa9.25□□□□□ -0.93
SIX4-202ENST00000554079 OR56A5P0C7T3 313 aa9.25□□□□□ -0.93
SIX4-202ENST00000554079 ANXA3P12429 323 aa9.25□□□□□ -0.93
SIX4-202ENST00000554079 SYN1P17600 705 aa9.25□□□□□ -0.93
SIX4-202ENST00000554079 MAPK1P28482 360 aa9.25□□□□□ -0.93
SIX4-202ENST00000554079 ATP5C1P36542 298 aaKnown RBP9.25□□□□□ -0.93
SIX4-202ENST00000554079 NNMTP40261 264 aa9.25□□□□□ -0.93
SIX4-202ENST00000554079 POLR2JP52435 117 aaKnown RBP9.25□□□□□ -0.93
SIX4-202ENST00000554079 FOXA1P55317 472 aa9.25□□□□□ -0.93
SIX4-202ENST00000554079 SH3BP2P78314 561 aa9.25□□□□□ -0.93
SIX4-202ENST00000554079 CYP4F8P98187 520 aa9.25□□□□□ -0.93
SIX4-202ENST00000554079 KHDRBS1Q07666 443 aaKnown RBP eCLIP9.25□□□□□ -0.93
SIX4-202ENST00000554079 CRYZQ08257 329 aaKnown RBP9.25□□□□□ -0.93
SIX4-202ENST00000554079 PTPRCAPQ14761 206 aa9.25□□□□□ -0.93
SIX4-202ENST00000554079 UGCGQ16739 394 aa9.25□□□□□ -0.93
SIX4-202ENST00000554079 CERCAMQ5T4B2 595 aa9.25□□□□□ -0.93
SIX4-202ENST00000554079 BHLHB9Q6PI77 547 aa9.25□□□□□ -0.93
SIX4-202ENST00000554079 SLC16A13Q7RTY0 426 aa9.25□□□□□ -0.93
SIX4-202ENST00000554079 SPATA19Q7Z5L4 167 aa9.25□□□□□ -0.93
SIX4-202ENST00000554079 HSD17B13Q7Z5P4 300 aaPredicted RBP9.25□□□□□ -0.93
SIX4-202ENST00000554079 SLC22A9Q8IVM8 553 aa9.25□□□□□ -0.93
SIX4-202ENST00000554079 MCATQ8IVS2 390 aaKnown RBP9.25□□□□□ -0.93
SIX4-202ENST00000554079 TMEM132CQ8N3T6 1108 aa9.25□□□□□ -0.93
SIX4-202ENST00000554079 TMEM145Q8NBT3 493 aa9.25□□□□□ -0.93
SIX4-202ENST00000554079 SFT2D1Q8WV19 159 aa9.25□□□□□ -0.93
SIX4-202ENST00000554079 CREB3L1Q96BA8 519 aa9.25□□□□□ -0.93
SIX4-202ENST00000554079 PHF21BQ96EK2 531 aa9.25□□□□□ -0.93
SIX4-202ENST00000554079 ZNF419Q96HQ0 510 aaPredicted RBP9.25□□□□□ -0.93
SIX4-202ENST00000554079 PIWIL1Q96J94 861 aaKnown RBP9.25□□□□□ -0.93
SIX4-202ENST00000554079 PPM1MQ96MI6 270 aa9.25□□□□□ -0.93
SIX4-202ENST00000554079 LGMNQ99538 433 aa9.25□□□□□ -0.93
SIX4-202ENST00000554079 RIT2Q99578 217 aa9.25□□□□□ -0.93
SIX4-202ENST00000554079 NTPCRQ9BSD7 190 aaKnown RBP9.25□□□□□ -0.93
SIX4-202ENST00000554079 CNPPD1Q9BV87 410 aa9.25□□□□□ -0.93
SIX4-202ENST00000554079 SARGQ9BW04 601 aa9.25□□□□□ -0.93
SIX4-202ENST00000554079 PAPOLGQ9BWT3 736 aaKnown RBP9.25□□□□□ -0.93
SIX4-202ENST00000554079 NUSAP1Q9BXS6 441 aaKnown RBP9.25□□□□□ -0.93
SIX4-202ENST00000554079 BRINP2Q9C0B6 783 aa9.25□□□□□ -0.93
SIX4-202ENST00000554079 ZNF436Q9C0F3 470 aaPredicted RBP9.25□□□□□ -0.93
SIX4-202ENST00000554079 NIF3L1Q9GZT8 377 aa9.25□□□□□ -0.93
SIX4-202ENST00000554079 XYLT2Q9H1B5 865 aa9.25□□□□□ -0.93
SIX4-202ENST00000554079 MED28Q9H204 178 aa9.25□□□□□ -0.93
SIX4-202ENST00000554079 OR51M1Q9H341 326 aa9.25□□□□□ -0.93
SIX4-202ENST00000554079 ZNF768Q9H5H4 540 aaKnown RBP9.25□□□□□ -0.93
SIX4-202ENST00000554079 CDCP1Q9H5V8 836 aa9.25□□□□□ -0.93
SIX4-202ENST00000554079 POLE3Q9NRF9 147 aa9.25□□□□□ -0.93
SIX4-202ENST00000554079 PIM2Q9P1W9 311 aa9.25□□□□□ -0.93
SIX4-202ENST00000554079 ENTPD4Q9Y227 616 aa9.25□□□□□ -0.93
SIX4-202ENST00000554079 NCKAP1Q9Y2A7 1128 aa9.25□□□□□ -0.93
SIX4-202ENST00000554079 PCDHGA6Q9Y5G7 932 aa9.25□□□□□ -0.93
SIX4-202ENST00000554079 TSC2P49815 1807 aa9.25□□□□□ -0.93
SIX4-202ENST00000554079 GLYATL1P3A0A0U1RQE8 302 aa9.24□□□□□ -0.93
SIX4-202ENST00000554079 C7orf66A4D0T2 115 aa9.24□□□□□ -0.93
SIX4-202ENST00000554079 MTMR11A4FU01 709 aa9.24□□□□□ -0.93
SIX4-202ENST00000554079 H3BM21 787 aa9.24□□□□□ -0.93
SIX4-202ENST00000554079 AIPO00170 330 aa9.24□□□□□ -0.93
SIX4-202ENST00000554079 ZBTB24O43167 697 aaPredicted RBP9.24□□□□□ -0.93
SIX4-202ENST00000554079 KCNQ2O43526 872 aa9.24□□□□□ -0.93
SIX4-202ENST00000554079 AP2A1O95782 977 aa9.24□□□□□ -0.93
SIX4-202ENST00000554079 CST3P01034 146 aaPredicted RBP9.24□□□□□ -0.93
SIX4-202ENST00000554079 ADRB1P08588 477 aa9.24□□□□□ -0.93
SIX4-202ENST00000554079 FGF4P08620 206 aa9.24□□□□□ -0.93
SIX4-202ENST00000554079 PAMP19021 973 aa9.24□□□□□ -0.93
SIX4-202ENST00000554079 ITGB8P26012 769 aa9.24□□□□□ -0.93
SIX4-202ENST00000554079 YWHABP31946 246 aaKnown RBP9.24□□□□□ -0.93
SIX4-202ENST00000554079 STARP49675 285 aa9.24□□□□□ -0.93
SIX4-202ENST00000554079 ATP12AP54707 1039 aa9.24□□□□□ -0.93
SIX4-202ENST00000554079 CSHL1Q14406 222 aa9.24□□□□□ -0.93
SIX4-202ENST00000554079 SWI5Q1ZZU3 235 aa9.24□□□□□ -0.93
SIX4-202ENST00000554079 ZNF284Q2VY69 593 aa9.24□□□□□ -0.93
SIX4-202ENST00000554079 C10orf62Q5T681 223 aaPredicted RBP9.24□□□□□ -0.93
SIX4-202ENST00000554079 FAM180BQ6P0A1 224 aa9.24□□□□□ -0.93
SIX4-202ENST00000554079 SCYL2Q6P3W7 929 aa9.24□□□□□ -0.93
SIX4-202ENST00000554079 RAB11FIP2Q7L804 512 aa9.24□□□□□ -0.93
SIX4-202ENST00000554079 SHFQ7M4L6 423 aa9.24□□□□□ -0.93
SIX4-202ENST00000554079 STX12Q86Y82 276 aa9.24□□□□□ -0.93
SIX4-202ENST00000554079 ZNF567Q8N184 647 aa9.24□□□□□ -0.93
SIX4-202ENST00000554079 EIF4E3Q8N5X7 224 aaKnown RBP9.24□□□□□ -0.93
SIX4-202ENST00000554079 ELP4Q96EB1 424 aa9.24□□□□□ -0.93
SIX4-202ENST00000554079 P2RY11Q96G91 374 aa9.24□□□□□ -0.93
SIX4-202ENST00000554079 DIRAS2Q96HU8 199 aa9.24□□□□□ -0.93
SIX4-202ENST00000554079 C10orf90Q96M02 699 aa9.24□□□□□ -0.93
SIX4-202ENST00000554079 TREX2Q9BQ50 279 aaPredicted RBP9.24□□□□□ -0.93
SIX4-202ENST00000554079 SOSTQ9BQB4 213 aa9.24□□□□□ -0.93
SIX4-202ENST00000554079 MND1Q9BWT6 205 aa9.24□□□□□ -0.93
SIX4-202ENST00000554079 SLC28A3Q9HAS3 691 aa9.24□□□□□ -0.93
SIX4-202ENST00000554079 SNTG1Q9NSN8 517 aa9.24□□□□□ -0.93
SIX4-202ENST00000554079 SPASTQ9UBP0 616 aa9.24□□□□□ -0.93
SIX4-202ENST00000554079 PFDN2Q9UHV9 154 aa9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms