RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 ADAMDEC1O15204 470 aa16.96■□□□□ 0.3
SYNE3-202ENST00000553340 KRT8P05787 483 aa16.96■□□□□ 0.3
SYNE3-202ENST00000553340 HNF1BP35680 557 aa16.96■□□□□ 0.3
SYNE3-202ENST00000553340 FKBP1BP68106 108 aa16.96■□□□□ 0.3
SYNE3-202ENST00000553340 DDX59Q5T1V6 619 aaKnown RBP eCLIP16.96■□□□□ 0.3
SYNE3-202ENST00000553340 THOC7Q6I9Y2 204 aaKnown RBP16.96■□□□□ 0.3
SYNE3-202ENST00000553340 SKA2Q8WVK7 121 aaPredicted RBP16.96■□□□□ 0.3
SYNE3-202ENST00000553340 Q96MT0 163 aa16.96■□□□□ 0.3
SYNE3-202ENST00000553340 EHD3Q9NZN3 535 aa16.96■□□□□ 0.3
SYNE3-202ENST00000553340 AP1M2Q9Y6Q5 423 aa16.96■□□□□ 0.3
SYNE3-202ENST00000553340 CENPFP49454 3210 aa16.95■□□□□ 0.3
SYNE3-202ENST00000553340 SERTM1A2A2V5 107 aa16.95■□□□□ 0.3
SYNE3-202ENST00000553340 PLK4O00444 970 aa16.95■□□□□ 0.3
SYNE3-202ENST00000553340 RGS13O14921 159 aa16.95■□□□□ 0.3
SYNE3-202ENST00000553340 KMOO15229 486 aa16.95■□□□□ 0.3
SYNE3-202ENST00000553340 AOC2O75106 756 aa16.95■□□□□ 0.3
SYNE3-202ENST00000553340 AOAHP28039 575 aa16.95■□□□□ 0.3
SYNE3-202ENST00000553340 SLC6A12P48065 614 aa16.95■□□□□ 0.3
SYNE3-202ENST00000553340 HNMTP50135 292 aa16.95■□□□□ 0.3
SYNE3-202ENST00000553340 COPZ1P61923 177 aa16.95■□□□□ 0.3
SYNE3-202ENST00000553340 BCL2L1Q07817 233 aa16.95■□□□□ 0.3
SYNE3-202ENST00000553340 PPIGQ13427 754 aaKnown RBP eCLIP16.95■□□□□ 0.3
SYNE3-202ENST00000553340 DEPDC4Q8N2C3 294 aa16.95■□□□□ 0.3
SYNE3-202ENST00000553340 CDC26Q8NHZ8 85 aa16.95■□□□□ 0.3
SYNE3-202ENST00000553340 SPPL2AQ8TCT8 520 aa16.95■□□□□ 0.3
SYNE3-202ENST00000553340 CRELD1Q96HD1 420 aa16.95■□□□□ 0.3
SYNE3-202ENST00000553340 FCRL1Q96LA6 429 aa16.95■□□□□ 0.3
SYNE3-202ENST00000553340 SLC12A9Q9BXP2 914 aa16.95■□□□□ 0.3
SYNE3-202ENST00000553340 ITM2CQ9NQX7 267 aa16.95■□□□□ 0.3
SYNE3-202ENST00000553340 KLHL42Q9P2K6 505 aa16.95■□□□□ 0.3
SYNE3-202ENST00000553340 VPS4AQ9UN37 437 aa16.95■□□□□ 0.3
SYNE3-202ENST00000553340 KLK4Q9Y5K2 254 aa16.95■□□□□ 0.3
SYNE3-202ENST00000553340 LYVE1Q9Y5Y7 322 aa16.95■□□□□ 0.3
SYNE3-202ENST00000553340 PTHP01270 115 aa16.95■□□□□ 0.3
SYNE3-202ENST00000553340 NUDT7P0C024 238 aa16.95■□□□□ 0.3
SYNE3-202ENST00000553340 HSMCR30P0CW71 290 aa16.95■□□□□ 0.3
SYNE3-202ENST00000553340 CYBAP13498 195 aa16.95■□□□□ 0.3
SYNE3-202ENST00000553340 AQP1P29972 269 aa16.95■□□□□ 0.3
SYNE3-202ENST00000553340 ETV6P41212 452 aa16.95■□□□□ 0.3
SYNE3-202ENST00000553340 CRYBA2P53672 197 aa16.95■□□□□ 0.3
SYNE3-202ENST00000553340 EIF4HQ15056 248 aaKnown RBP16.95■□□□□ 0.3
SYNE3-202ENST00000553340 TRIM71Q2Q1W2 868 aaKnown RBP16.95■□□□□ 0.3
SYNE3-202ENST00000553340 C10orf62Q5T681 223 aaPredicted RBP16.95■□□□□ 0.3
SYNE3-202ENST00000553340 AGAP6Q5VW22 663 aa16.95■□□□□ 0.3
SYNE3-202ENST00000553340 SLC5A8Q8N695 610 aa16.95■□□□□ 0.3
SYNE3-202ENST00000553340 DENND6BQ8NEG7 585 aa16.95■□□□□ 0.3
SYNE3-202ENST00000553340 IL17RDQ8NFM7 739 aa16.95■□□□□ 0.3
SYNE3-202ENST00000553340 OR10G2Q8NGC3 310 aa16.95■□□□□ 0.3
SYNE3-202ENST00000553340 LINC01599Q8WXQ3 324 aa16.95■□□□□ 0.3
SYNE3-202ENST00000553340 AGAP4Q96P64 663 aa16.95■□□□□ 0.3
SYNE3-202ENST00000553340 CORO2BQ9UQ03 480 aa16.95■□□□□ 0.3
SYNE3-202ENST00000553340 SLC22A14Q9Y267 594 aa16.95■□□□□ 0.3
SYNE3-202ENST00000553340 POFUT2Q9Y2G5 429 aa16.95■□□□□ 0.3
SYNE3-202ENST00000553340 A8MX80 341 aa16.94■□□□□ 0.3
SYNE3-202ENST00000553340 UPK3BL1B0FP48 263 aa16.94■□□□□ 0.3
SYNE3-202ENST00000553340 UPK3BL2E5RIL1 263 aa16.94■□□□□ 0.3
SYNE3-202ENST00000553340 LOC110117498-PIK3R3F6TDL0 507 aa16.94■□□□□ 0.3
SYNE3-202ENST00000553340 K7ERQ8 282 aa16.94■□□□□ 0.3
SYNE3-202ENST00000553340 GFRA2O00451 464 aa16.94■□□□□ 0.3
SYNE3-202ENST00000553340 TBL1XO60907 577 aa16.94■□□□□ 0.3
SYNE3-202ENST00000553340 C8GP07360 202 aa16.94■□□□□ 0.3
SYNE3-202ENST00000553340 LAMP1P11279 417 aa16.94■□□□□ 0.3
SYNE3-202ENST00000553340 ANXA8P13928 327 aa16.94■□□□□ 0.3
SYNE3-202ENST00000553340 CCR7P32248 378 aa16.94■□□□□ 0.3
SYNE3-202ENST00000553340 LIMK1P53667 647 aa16.94■□□□□ 0.3
SYNE3-202ENST00000553340 TEKQ02763 1124 aa16.94■□□□□ 0.3
SYNE3-202ENST00000553340 ST3GAL4Q11206 333 aa16.94■□□□□ 0.3
SYNE3-202ENST00000553340 CDKN3Q16667 212 aa16.94■□□□□ 0.3
SYNE3-202ENST00000553340 RTP2Q5QGT7 225 aa16.94■□□□□ 0.3
SYNE3-202ENST00000553340 CBARPQ8N350 705 aaPredicted RBP16.94■□□□□ 0.3
SYNE3-202ENST00000553340 RNF175Q8N4F7 328 aa16.94■□□□□ 0.3
SYNE3-202ENST00000553340 PIK3R3Q92569 461 aa16.94■□□□□ 0.3
SYNE3-202ENST00000553340 MAGEB10Q96LZ2 347 aaPredicted RBP16.94■□□□□ 0.3
SYNE3-202ENST00000553340 DNAJC11Q9NVH1 559 aa16.94■□□□□ 0.3
SYNE3-202ENST00000553340 EIF3FO00303 357 aaPredicted RBP16.94■□□□□ 0.3
SYNE3-202ENST00000553340 ZW10O43264 779 aa16.94■□□□□ 0.3
SYNE3-202ENST00000553340 DNTTP04053 509 aa16.94■□□□□ 0.3
SYNE3-202ENST00000553340 PPIBP23284 216 aaKnown RBP16.94■□□□□ 0.3
SYNE3-202ENST00000553340 CYP4F2P78329 520 aa16.94■□□□□ 0.3
SYNE3-202ENST00000553340 CHIT1Q13231 466 aa16.94■□□□□ 0.3
SYNE3-202ENST00000553340 KCNA10Q16322 511 aa16.94■□□□□ 0.3
SYNE3-202ENST00000553340 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP16.94■□□□□ 0.3
SYNE3-202ENST00000553340 TPGS1Q6ZTW0 290 aa16.94■□□□□ 0.3
SYNE3-202ENST00000553340 CELF2-AS1Q8N7Q2 184 aa16.94■□□□□ 0.3
SYNE3-202ENST00000553340 WBP2Q969T9 261 aa16.94■□□□□ 0.3
SYNE3-202ENST00000553340 SH3KBP1Q96B97 665 aa16.94■□□□□ 0.3
SYNE3-202ENST00000553340 DUSP26Q9BV47 211 aa16.94■□□□□ 0.3
SYNE3-202ENST00000553340 NMRK2Q9NPI5 230 aa16.94■□□□□ 0.3
SYNE3-202ENST00000553340 TMEM184CQ9NVA4 438 aa16.94■□□□□ 0.3
SYNE3-202ENST00000553340 PCDHGA2Q9Y5H1 932 aa16.94■□□□□ 0.3
SYNE3-202ENST00000553340 FRMPD3Q5JV73 1810 aa16.93■□□□□ 0.3
SYNE3-202ENST00000553340 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP16.93■□□□□ 0.3
SYNE3-202ENST00000553340 H7C4K7 107 aa16.93■□□□□ 0.3
SYNE3-202ENST00000553340 PRAMEF4O60810 478 aa16.93■□□□□ 0.3
SYNE3-202ENST00000553340 JUPP14923 745 aa16.93■□□□□ 0.3
SYNE3-202ENST00000553340 ITPKAP23677 461 aa16.93■□□□□ 0.3
SYNE3-202ENST00000553340 HSPA14Q0VDF9 509 aa16.93■□□□□ 0.3
SYNE3-202ENST00000553340 TEAD4Q15561 434 aa16.93■□□□□ 0.3
SYNE3-202ENST00000553340 PRAMEF9Q5VWM5 478 aa16.93■□□□□ 0.3
SYNE3-202ENST00000553340 ANKS3Q6ZW76 656 aa16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms