RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 J3KTA2 159 aa5.39□□□□□ -1.55
LIMA1-215ENST00000552823 OR1F1O43749 312 aa5.39□□□□□ -1.55
LIMA1-215ENST00000552823 AHCYL1O43865 530 aa5.39□□□□□ -1.55
LIMA1-215ENST00000552823 SNUPNO95149 360 aaKnown RBP5.39□□□□□ -1.55
LIMA1-215ENST00000552823 EFEMP2O95967 443 aa5.39□□□□□ -1.55
LIMA1-215ENST00000552823 ADH1CP00326 375 aa5.39□□□□□ -1.55
LIMA1-215ENST00000552823 IL6P05231 212 aa5.39□□□□□ -1.55
LIMA1-215ENST00000552823 PABPC4LP0CB38 370 aaKnown RBP5.39□□□□□ -1.55
LIMA1-215ENST00000552823 HSMCR30P0CW71 290 aa5.39□□□□□ -1.55
LIMA1-215ENST00000552823 RAP2AP10114 183 aa5.39□□□□□ -1.55
LIMA1-215ENST00000552823 BMP2P12643 396 aa5.39□□□□□ -1.55
LIMA1-215ENST00000552823 HOXB3P14651 431 aaPredicted RBP5.39□□□□□ -1.55
LIMA1-215ENST00000552823 ZNF182P17025 639 aaPredicted RBP5.39□□□□□ -1.55
LIMA1-215ENST00000552823 PSMB9P28065 219 aa5.39□□□□□ -1.55
LIMA1-215ENST00000552823 RPL26P61254 145 aaKnown RBP5.39□□□□□ -1.55
LIMA1-215ENST00000552823 TFF2Q03403 129 aa5.39□□□□□ -1.55
LIMA1-215ENST00000552823 MAD2L1Q13257 205 aaPredicted RBP5.39□□□□□ -1.55
LIMA1-215ENST00000552823 PPIGQ13427 754 aaKnown RBP eCLIP5.39□□□□□ -1.55
LIMA1-215ENST00000552823 KIAA0040Q15053 153 aa5.39□□□□□ -1.55
LIMA1-215ENST00000552823 ZNF750Q32MQ0 723 aa5.39□□□□□ -1.55
LIMA1-215ENST00000552823 ZNF385BQ569K4 471 aa5.39□□□□□ -1.55
LIMA1-215ENST00000552823 RUNDC3AQ59EK9 446 aa5.39□□□□□ -1.55
LIMA1-215ENST00000552823 RPS26P11Q5JNZ5 115 aaPredicted RBP5.39□□□□□ -1.55
LIMA1-215ENST00000552823 AP1ARQ63HQ0 302 aa5.39□□□□□ -1.55
LIMA1-215ENST00000552823 CAPN13Q6MZZ7 669 aaPredicted RBP5.39□□□□□ -1.55
LIMA1-215ENST00000552823 HACD2Q6Y1H2 254 aa5.39□□□□□ -1.55
LIMA1-215ENST00000552823 B3GNT6Q6ZMB0 384 aa5.39□□□□□ -1.55
LIMA1-215ENST00000552823 SNX29P2Q8IUI4 249 aa5.39□□□□□ -1.55
LIMA1-215ENST00000552823 NPAS3Q8IXF0 933 aa5.39□□□□□ -1.55
LIMA1-215ENST00000552823 GALNT15Q8N3T1 639 aa5.39□□□□□ -1.55
LIMA1-215ENST00000552823 ANKFN1Q8N957 763 aa5.39□□□□□ -1.55
LIMA1-215ENST00000552823 PDLIM5Q96HC4 596 aaKnown RBP5.39□□□□□ -1.55
LIMA1-215ENST00000552823 HSH2DQ96JZ2 352 aa5.39□□□□□ -1.55
LIMA1-215ENST00000552823 PLA2G2FQ9BZM2 168 aa5.39□□□□□ -1.55
LIMA1-215ENST00000552823 PAIP1Q9H074 479 aaKnown RBP5.39□□□□□ -1.55
LIMA1-215ENST00000552823 TRPS1Q9UHF7 1281 aa5.39□□□□□ -1.55
LIMA1-215ENST00000552823 PCDHGA8Q9Y5G5 932 aa5.39□□□□□ -1.55
LIMA1-215ENST00000552823 PCDHGA11Q9Y5H2 935 aa5.39□□□□□ -1.55
LIMA1-215ENST00000552823 ORC6Q9Y5N6 252 aa5.39□□□□□ -1.55
LIMA1-215ENST00000552823 CACNA1EQ15878 2313 aa5.39□□□□□ -1.55
LIMA1-215ENST00000552823 PNMA8CA0A1B0GUJ8 204 aa5.39□□□□□ -1.55
LIMA1-215ENST00000552823 TRMUO75648 421 aaKnown RBP5.39□□□□□ -1.55
LIMA1-215ENST00000552823 PRSS23O95084 383 aa5.39□□□□□ -1.55
LIMA1-215ENST00000552823 EIF2S1P05198 315 aaKnown RBP5.39□□□□□ -1.55
LIMA1-215ENST00000552823 IL3P08700 152 aa5.39□□□□□ -1.55
LIMA1-215ENST00000552823 ADRB3P13945 408 aa5.39□□□□□ -1.55
LIMA1-215ENST00000552823 HTR1EP28566 365 aa5.39□□□□□ -1.55
LIMA1-215ENST00000552823 CDH12P55289 794 aa5.39□□□□□ -1.55
LIMA1-215ENST00000552823 CLDN8P56748 225 aa5.39□□□□□ -1.55
LIMA1-215ENST00000552823 VLDLRP98155 873 aa5.39□□□□□ -1.55
LIMA1-215ENST00000552823 BIRC2Q13490 618 aa5.39□□□□□ -1.55
LIMA1-215ENST00000552823 ATP6AP1Q15904 470 aa5.39□□□□□ -1.55
LIMA1-215ENST00000552823 CYBRD1Q53TN4 286 aa5.39□□□□□ -1.55
LIMA1-215ENST00000552823 FGD3Q5JSP0 725 aa5.39□□□□□ -1.55
LIMA1-215ENST00000552823 MPP7Q5T2T1 576 aa5.39□□□□□ -1.55
LIMA1-215ENST00000552823 C8orf82Q6P1X6 216 aaPredicted RBP5.39□□□□□ -1.55
LIMA1-215ENST00000552823 MED27Q6P2C8 311 aa5.39□□□□□ -1.55
LIMA1-215ENST00000552823 ARMCX6Q7L4S7 300 aa5.39□□□□□ -1.55
LIMA1-215ENST00000552823 PIWIL3Q7Z3Z3 882 aaKnown RBP5.39□□□□□ -1.55
LIMA1-215ENST00000552823 CARM1Q86X55 608 aa5.39□□□□□ -1.55
LIMA1-215ENST00000552823 RNF130Q86XS8 419 aa5.39□□□□□ -1.55
LIMA1-215ENST00000552823 EID3Q8N140 333 aa5.39□□□□□ -1.55
LIMA1-215ENST00000552823 CBARPQ8N350 705 aaPredicted RBP5.39□□□□□ -1.55
LIMA1-215ENST00000552823 CELF5Q8N6W0 485 aaKnown RBP5.39□□□□□ -1.55
LIMA1-215ENST00000552823 AMER3Q8N944 861 aa5.39□□□□□ -1.55
LIMA1-215ENST00000552823 ZNF548Q8NEK5 533 aaPredicted RBP5.39□□□□□ -1.55
LIMA1-215ENST00000552823 NFKBIDQ8NI38 313 aa5.39□□□□□ -1.55
LIMA1-215ENST00000552823 XAGE5Q8WWM1 108 aa5.39□□□□□ -1.55
LIMA1-215ENST00000552823 ZNF707Q96C28 371 aaPredicted RBP5.39□□□□□ -1.55
LIMA1-215ENST00000552823 C12orf43Q96C57 262 aaKnown RBP5.39□□□□□ -1.55
LIMA1-215ENST00000552823 ECHDC3Q96DC8 303 aa5.39□□□□□ -1.55
LIMA1-215ENST00000552823 C12orf66Q96MD2 445 aa5.39□□□□□ -1.55
LIMA1-215ENST00000552823 MCCC1Q96RQ3 725 aaPredicted RBP5.39□□□□□ -1.55
LIMA1-215ENST00000552823 ZSCAN5AQ9BUG6 496 aa5.39□□□□□ -1.55
LIMA1-215ENST00000552823 NTMT1Q9BV86 223 aa5.39□□□□□ -1.55
LIMA1-215ENST00000552823 TRMT61BQ9BVS5 477 aaKnown RBP5.39□□□□□ -1.55
LIMA1-215ENST00000552823 PRR14Q9BWN1 585 aa5.39□□□□□ -1.55
LIMA1-215ENST00000552823 ASPSCR1Q9BZE9 553 aa5.39□□□□□ -1.55
LIMA1-215ENST00000552823 FAM192AQ9GZU8 254 aa5.39□□□□□ -1.55
LIMA1-215ENST00000552823 ARMC1Q9NVT9 282 aa5.39□□□□□ -1.55
LIMA1-215ENST00000552823 RSL24D1Q9UHA3 163 aaKnown RBP5.39□□□□□ -1.55
LIMA1-215ENST00000552823 FBXW2Q9UKT8 454 aa5.39□□□□□ -1.55
LIMA1-215ENST00000552823 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP5.39□□□□□ -1.55
LIMA1-215ENST00000552823 PCDHB3Q9Y5E6 796 aa5.39□□□□□ -1.55
LIMA1-215ENST00000552823 ARHGEF17Q96PE2 2063 aaPredicted RBP5.39□□□□□ -1.55
LIMA1-215ENST00000552823 A0A087WXM4 84 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 H0Y8X5 98 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 GFRA2O00451 464 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 NUAK1O60285 661 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 NOL3O60936 208 aaKnown RBP5.38□□□□□ -1.55
LIMA1-215ENST00000552823 FADS2O95864 444 aaKnown RBP5.38□□□□□ -1.55
LIMA1-215ENST00000552823 FESP07332 822 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 JUPP14923 745 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 CD247P20963 164 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 AK4P27144 223 aaPredicted RBP5.38□□□□□ -1.55
LIMA1-215ENST00000552823 GPC1P35052 558 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 ENTPD1P49961 510 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 PSMD7P51665 324 aa5.38□□□□□ -1.55
LIMA1-215ENST00000552823 ROR2Q01974 943 aaKnown RBP5.38□□□□□ -1.55
LIMA1-215ENST00000552823 ID2Q02363 134 aa5.38□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms