RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 KCNA10Q16322 511 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 UPP1Q16831 310 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 ATXN7L2Q5T6C5 722 aaPredicted RBP4.7□□□□□ -1.66
LIMA1-214ENST00000552783 LDLRAD1Q5T700 205 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 FAM171BQ6P995 826 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 SYCE2Q6PIF2 218 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 BCDIN3DQ7Z5W3 292 aaKnown RBP4.7□□□□□ -1.66
LIMA1-214ENST00000552783 NOXA1Q86UR1 476 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 MON1AQ86VX9 555 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 FAM20CQ8IXL6 584 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 SLC5A8Q8N695 610 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 ANKK1Q8NFD2 765 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 B3GNT7Q8NFL0 401 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 NLGN4YQ8NFZ3 816 aaPredicted RBP4.7□□□□□ -1.66
LIMA1-214ENST00000552783 OR52E4Q8NGH9 312 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 SLC7A6Q92536 515 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 C7orf34Q96L11 122 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 PITX2Q99697 317 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 TSEN34Q9BSV6 310 aaKnown RBP4.7□□□□□ -1.66
LIMA1-214ENST00000552783 C11orf54Q9H0W9 315 aaPredicted RBP4.7□□□□□ -1.66
LIMA1-214ENST00000552783 NARFLQ9H6Q4 476 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 CCSER2Q9H7U1 834 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 TM9SF3Q9HD45 589 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 RPRD1BQ9NQG5 326 aaKnown RBP4.7□□□□□ -1.66
LIMA1-214ENST00000552783 NLE1Q9NVX2 485 aaPredicted RBP4.7□□□□□ -1.66
LIMA1-214ENST00000552783 FKBP14Q9NWM8 211 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 TOR4AQ9NXH8 423 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 MS4A12Q9NXJ0 267 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 MAT2BQ9NZL9 334 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 KLHL20Q9Y2M5 609 aa4.7□□□□□ -1.66
LIMA1-214ENST00000552783 TRAV19A0A0A6YYK7 116 aa4.69□□□□□ -1.66
LIMA1-214ENST00000552783 MBLAC1A4D2B0 266 aaPredicted RBP4.69□□□□□ -1.66
LIMA1-214ENST00000552783 OR6C70A6NIJ9 312 aa4.69□□□□□ -1.66
LIMA1-214ENST00000552783 UNCXA6NJT0 531 aa4.69□□□□□ -1.66
LIMA1-214ENST00000552783 C2orf81A6NN90 581 aa4.69□□□□□ -1.66
LIMA1-214ENST00000552783 FFAR2O15552 330 aa4.69□□□□□ -1.66
LIMA1-214ENST00000552783 AOC2O75106 756 aa4.69□□□□□ -1.66
LIMA1-214ENST00000552783 FABP3P05413 133 aa4.69□□□□□ -1.66
LIMA1-214ENST00000552783 IGFBP1P08833 259 aaPredicted RBP4.69□□□□□ -1.66
LIMA1-214ENST00000552783 CLEC2LP0C7M8 214 aa4.69□□□□□ -1.66
LIMA1-214ENST00000552783 UBL4AP11441 157 aa4.69□□□□□ -1.66
LIMA1-214ENST00000552783 IL7P13232 177 aa4.69□□□□□ -1.66
LIMA1-214ENST00000552783 ENGP17813 658 aa4.69□□□□□ -1.66
LIMA1-214ENST00000552783 GABRB1P18505 474 aa4.69□□□□□ -1.66
LIMA1-214ENST00000552783 OGNP20774 298 aaKnown RBP4.69□□□□□ -1.66
LIMA1-214ENST00000552783 ENPP1P22413 925 aa4.69□□□□□ -1.66
LIMA1-214ENST00000552783 IFNA8P32881 189 aa4.69□□□□□ -1.66
LIMA1-214ENST00000552783 ETV6P41212 452 aa4.69□□□□□ -1.66
LIMA1-214ENST00000552783 KIR2DL3P43628 341 aa4.69□□□□□ -1.66
LIMA1-214ENST00000552783 SERINC3Q13530 473 aa4.69□□□□□ -1.66
LIMA1-214ENST00000552783 UAP1L1Q3KQV9 507 aa4.69□□□□□ -1.66
LIMA1-214ENST00000552783 GPAT3Q53EU6 434 aa4.69□□□□□ -1.66
LIMA1-214ENST00000552783 ATG9BQ674R7 924 aa4.69□□□□□ -1.66
LIMA1-214ENST00000552783 LAMTOR1Q6IAA8 161 aa4.69□□□□□ -1.66
LIMA1-214ENST00000552783 PAQR6Q6TCH4 344 aa4.69□□□□□ -1.66
LIMA1-214ENST00000552783 ANGPTL8Q6UXH0 198 aa4.69□□□□□ -1.66
LIMA1-214ENST00000552783 HORMAD1Q86X24 394 aa4.69□□□□□ -1.66
LIMA1-214ENST00000552783 P3H2Q8IVL5 708 aa4.69□□□□□ -1.66
LIMA1-214ENST00000552783 ZZZ3Q8IYH5 903 aa4.69□□□□□ -1.66
LIMA1-214ENST00000552783 CARNMT1Q8N4J0 409 aa4.69□□□□□ -1.66
LIMA1-214ENST00000552783 AADATQ8N5Z0 425 aa4.69□□□□□ -1.66
LIMA1-214ENST00000552783 SREK1IP1Q8N9Q2 155 aaPredicted RBP4.69□□□□□ -1.66
LIMA1-214ENST00000552783 OR4M2Q8NGB6 313 aa4.69□□□□□ -1.66
LIMA1-214ENST00000552783 OR9Q2Q8NGE9 314 aa4.69□□□□□ -1.66
LIMA1-214ENST00000552783 UTP15Q8TED0 518 aaKnown RBP4.69□□□□□ -1.66
LIMA1-214ENST00000552783 UBASH3BQ8TF42 649 aa4.69□□□□□ -1.66
LIMA1-214ENST00000552783 PCNPQ8WW12 178 aaKnown RBP4.69□□□□□ -1.66
LIMA1-214ENST00000552783 MED30Q96HR3 178 aa4.69□□□□□ -1.66
LIMA1-214ENST00000552783 EBPLQ9BY08 206 aa4.69□□□□□ -1.66
LIMA1-214ENST00000552783 ARHGAP39Q9C0H5 1083 aa4.69□□□□□ -1.66
LIMA1-214ENST00000552783 FBXO44Q9H4M3 255 aa4.69□□□□□ -1.66
LIMA1-214ENST00000552783 LRTM1Q9HBL6 345 aa4.69□□□□□ -1.66
LIMA1-214ENST00000552783 TLR8Q9NR97 1041 aaKnown RBP4.69□□□□□ -1.66
LIMA1-214ENST00000552783 SNTG1Q9NSN8 517 aa4.69□□□□□ -1.66
LIMA1-214ENST00000552783 SPASTQ9UBP0 616 aa4.69□□□□□ -1.66
LIMA1-214ENST00000552783 OGDHLQ9ULD0 1010 aa4.69□□□□□ -1.66
LIMA1-214ENST00000552783 PRSS21Q9Y6M0 314 aa4.69□□□□□ -1.66
LIMA1-214ENST00000552783 MYO15AQ9UKN7 3530 aa4.69□□□□□ -1.66
LIMA1-214ENST00000552783 ALPK3Q96L96 1907 aa4.69□□□□□ -1.66
LIMA1-214ENST00000552783 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP4.69□□□□□ -1.66
LIMA1-214ENST00000552783 CDK2AP1O14519 115 aa4.69□□□□□ -1.66
LIMA1-214ENST00000552783 B4GALT3O60512 393 aa4.69□□□□□ -1.66
LIMA1-214ENST00000552783 PRAMEF4O60810 478 aa4.69□□□□□ -1.66
LIMA1-214ENST00000552783 ZNF780AO75290 641 aaPredicted RBP4.69□□□□□ -1.66
LIMA1-214ENST00000552783 VPS26AO75436 327 aa4.69□□□□□ -1.66
LIMA1-214ENST00000552783 PDYNP01213 254 aa4.69□□□□□ -1.66
LIMA1-214ENST00000552783 APOA1P02647 267 aa4.69□□□□□ -1.66
LIMA1-214ENST00000552783 IL6P05231 212 aa4.69□□□□□ -1.66
LIMA1-214ENST00000552783 RHOCP08134 193 aa4.69□□□□□ -1.66
LIMA1-214ENST00000552783 ZNF865P0CJ78 1059 aaPredicted RBP4.69□□□□□ -1.66
LIMA1-214ENST00000552783 SRCP12931 536 aa4.69□□□□□ -1.66
LIMA1-214ENST00000552783 KDELR2P33947 212 aa4.69□□□□□ -1.66
LIMA1-214ENST00000552783 FEN1P39748 380 aaKnown RBP4.69□□□□□ -1.66
LIMA1-214ENST00000552783 GNPDA1P46926 289 aa4.69□□□□□ -1.66
LIMA1-214ENST00000552783 OR3A3P47888 321 aa4.69□□□□□ -1.66
LIMA1-214ENST00000552783 ATN1P54259 1190 aaPredicted RBP4.69□□□□□ -1.66
LIMA1-214ENST00000552783 KCNJ10P78508 379 aa4.69□□□□□ -1.66
LIMA1-214ENST00000552783 ELP6Q0PNE2 266 aa4.69□□□□□ -1.66
LIMA1-214ENST00000552783 ZNF177Q13360 481 aaPredicted RBP4.69□□□□□ -1.66
LIMA1-214ENST00000552783 DDX39BQ13838 428 aaKnown RBP4.69□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms