RNA–Protein interactions for RNA: ENST00000543016.1

DDX55-210, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 329 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-210ENST00000543016 PCDHGA4Q9Y5G9 962 aa11.66□□□□□ -0.54
DDX55-210ENST00000543016 PCDHGA11Q9Y5H2 935 aa11.66□□□□□ -0.54
DDX55-210ENST00000543016 PTPRBP23467 1997 aa11.66□□□□□ -0.54
DDX55-210ENST00000543016 DMXL1Q9Y485 3027 aa11.66□□□□□ -0.54
DDX55-210ENST00000543016 HEATR5BQ9P2D3 2071 aa11.66□□□□□ -0.54
DDX55-210ENST00000543016 A0A0J9YVX5 310 aa11.65□□□□□ -0.54
DDX55-210ENST00000543016 FITM1A5D6W6 292 aa11.65□□□□□ -0.54
DDX55-210ENST00000543016 TRABD2BA6NFA1 517 aa11.65□□□□□ -0.54
DDX55-210ENST00000543016 TMEM150CB9EJG8 249 aa11.65□□□□□ -0.54
DDX55-210ENST00000543016 H0YGG7 62 aa11.65□□□□□ -0.54
DDX55-210ENST00000543016 H0YIV9 168 aa11.65□□□□□ -0.54
DDX55-210ENST00000543016 HAT1O14929 419 aa11.65□□□□□ -0.54
DDX55-210ENST00000543016 OR1F1O43749 312 aa11.65□□□□□ -0.54
DDX55-210ENST00000543016 NPHS1O60500 1241 aa11.65□□□□□ -0.54
DDX55-210ENST00000543016 GRK2P25098 689 aa11.65□□□□□ -0.54
DDX55-210ENST00000543016 ALDH3A1P30838 453 aa11.65□□□□□ -0.54
DDX55-210ENST00000543016 MAPK10P53779 464 aa11.65□□□□□ -0.54
DDX55-210ENST00000543016 ARF3P61204 181 aaPredicted RBP11.65□□□□□ -0.54
DDX55-210ENST00000543016 PHEXP78562 749 aa11.65□□□□□ -0.54
DDX55-210ENST00000543016 FOXK2Q01167 660 aa11.65□□□□□ -0.54
DDX55-210ENST00000543016 ZNF33BQ06732 778 aa11.65□□□□□ -0.54
DDX55-210ENST00000543016 SLBPQ14493 270 aaKnown RBP eCLIP11.65□□□□□ -0.54
DDX55-210ENST00000543016 KCNAB1Q14722 419 aa11.65□□□□□ -0.54
DDX55-210ENST00000543016 GPR19Q15760 415 aa11.65□□□□□ -0.54
DDX55-210ENST00000543016 TTMPQ5BVD1 217 aa11.65□□□□□ -0.54
DDX55-210ENST00000543016 NIPAL1Q6NVV3 410 aa11.65□□□□□ -0.54
DDX55-210ENST00000543016 MED27Q6P2C8 311 aa11.65□□□□□ -0.54
DDX55-210ENST00000543016 FRMD7Q6ZUT3 714 aa11.65□□□□□ -0.54
DDX55-210ENST00000543016 MILR1Q7Z6M3 343 aa11.65□□□□□ -0.54
DDX55-210ENST00000543016 CCNYL1Q8N7R7 359 aa11.65□□□□□ -0.54
DDX55-210ENST00000543016 TTC29Q8NA56 475 aaPredicted RBP11.65□□□□□ -0.54
DDX55-210ENST00000543016 RAB3IL1Q8TBN0 382 aa11.65□□□□□ -0.54
DDX55-210ENST00000543016 USP7Q93009 1102 aa11.65□□□□□ -0.54
DDX55-210ENST00000543016 LRFN5Q96NI6 719 aa11.65□□□□□ -0.54
DDX55-210ENST00000543016 FAM117AQ9C073 453 aa11.65□□□□□ -0.54
DDX55-210ENST00000543016 RHBGQ9H310 441 aa11.65□□□□□ -0.54
DDX55-210ENST00000543016 C12orf65Q9H3J6 166 aaKnown RBP11.65□□□□□ -0.54
DDX55-210ENST00000543016 OCEL1Q9H607 264 aa11.65□□□□□ -0.54
DDX55-210ENST00000543016 ZBTB26Q9HCK0 441 aa11.65□□□□□ -0.54
DDX55-210ENST00000543016 PSD3Q9NYI0 1048 aa11.65□□□□□ -0.54
DDX55-210ENST00000543016 DKK4Q9UBT3 224 aa11.65□□□□□ -0.54
DDX55-210ENST00000543016 TRPS1Q9UHF7 1281 aa11.65□□□□□ -0.54
DDX55-210ENST00000543016 AK5Q9Y6K8 562 aa11.65□□□□□ -0.54
DDX55-210ENST00000543016 A0A1W2PNU3 283 aaPredicted RBP11.64□□□□□ -0.55
DDX55-210ENST00000543016 URADA6NGE7 173 aa11.64□□□□□ -0.55
DDX55-210ENST00000543016 ANKDD1BA6NHY2 528 aa11.64□□□□□ -0.55
DDX55-210ENST00000543016 LRRC14BA6NHZ5 514 aa11.64□□□□□ -0.55
DDX55-210ENST00000543016 CDRT15L2A8MXV6 281 aa11.64□□□□□ -0.55
DDX55-210ENST00000543016 IQCJ-SCHIP1C9J366 451 aaPredicted RBP11.64□□□□□ -0.55
DDX55-210ENST00000543016 OR7A17O14581 309 aa11.64□□□□□ -0.55
DDX55-210ENST00000543016 PRAMEF10O60809 474 aa11.64□□□□□ -0.55
DDX55-210ENST00000543016 CLEC3AO75596 197 aa11.64□□□□□ -0.55
DDX55-210ENST00000543016 SNRNP200O75643 2136 aaKnown RBP11.64□□□□□ -0.55
DDX55-210ENST00000543016 ESRRBO95718 433 aa11.64□□□□□ -0.55
DDX55-210ENST00000543016 SERPINE1P05121 402 aa11.64□□□□□ -0.55
DDX55-210ENST00000543016 ENO1P06733 434 aaKnown RBP11.64□□□□□ -0.55
DDX55-210ENST00000543016 SERPINA6P08185 405 aa11.64□□□□□ -0.55
DDX55-210ENST00000543016 SLC35G6P0C7Q6 338 aa11.64□□□□□ -0.55
DDX55-210ENST00000543016 HGFP14210 728 aa11.64□□□□□ -0.55
DDX55-210ENST00000543016 ITIH1P19827 911 aa11.64□□□□□ -0.55
DDX55-210ENST00000543016 VARSP26640 1264 aaKnown RBP11.64□□□□□ -0.55
DDX55-210ENST00000543016 PIK3CBP42338 1070 aa11.64□□□□□ -0.55
DDX55-210ENST00000543016 CDH13P55290 713 aa11.64□□□□□ -0.55
DDX55-210ENST00000543016 VSX2P58304 361 aaPredicted RBP11.64□□□□□ -0.55
DDX55-210ENST00000543016 SKP1P63208 163 aa11.64□□□□□ -0.55
DDX55-210ENST00000543016 RGS1Q08116 209 aa11.64□□□□□ -0.55
DDX55-210ENST00000543016 TRAF3Q13114 568 aa11.64□□□□□ -0.55
DDX55-210ENST00000543016 MPP2Q14168 576 aa11.64□□□□□ -0.55
DDX55-210ENST00000543016 MAP7Q14244 749 aa11.64□□□□□ -0.55
DDX55-210ENST00000543016 RBBP5Q15291 538 aaKnown RBP11.64□□□□□ -0.55
DDX55-210ENST00000543016 RBBP7Q16576 425 aa11.64□□□□□ -0.55
DDX55-210ENST00000543016 NDUFA9Q16795 377 aa11.64□□□□□ -0.55
DDX55-210ENST00000543016 PRTGQ2VWP7 1150 aa11.64□□□□□ -0.55
DDX55-210ENST00000543016 WASHC2DQ5SRD0 308 aa11.64□□□□□ -0.55
DDX55-210ENST00000543016 GPRIN3Q6ZVF9 776 aa11.64□□□□□ -0.55
DDX55-210ENST00000543016 ASPGQ86U10 573 aa11.64□□□□□ -0.55
DDX55-210ENST00000543016 LAS2Q8IYD9 372 aa11.64□□□□□ -0.55
DDX55-210ENST00000543016 ARFGAP2Q8N6H7 521 aa11.64□□□□□ -0.55
DDX55-210ENST00000543016 CSNK1A1LQ8N752 337 aa11.64□□□□□ -0.55
DDX55-210ENST00000543016 OR1L3Q8NH93 324 aa11.64□□□□□ -0.55
DDX55-210ENST00000543016 PPP1R14CQ8TAE6 165 aa11.64□□□□□ -0.55
DDX55-210ENST00000543016 TRPC4APQ8TEL6 797 aa11.64□□□□□ -0.55
DDX55-210ENST00000543016 SLC13A3Q8WWT9 602 aa11.64□□□□□ -0.55
DDX55-210ENST00000543016 TM4SF19Q96DZ7 209 aa11.64□□□□□ -0.55
DDX55-210ENST00000543016 MVB12AQ96EY5 273 aa11.64□□□□□ -0.55
DDX55-210ENST00000543016 DPH2Q9BQC3 489 aaPredicted RBP11.64□□□□□ -0.55
DDX55-210ENST00000543016 NDC1Q9BTX1 674 aa11.64□□□□□ -0.55
DDX55-210ENST00000543016 GATA5Q9BWX5 397 aaPredicted RBP11.64□□□□□ -0.55
DDX55-210ENST00000543016 SLC29A3Q9BZD2 475 aa11.64□□□□□ -0.55
DDX55-210ENST00000543016 GSTO2Q9H4Y5 243 aa11.64□□□□□ -0.55
DDX55-210ENST00000543016 SEMA4BQ9NPR2 832 aaPredicted RBP11.64□□□□□ -0.55
DDX55-210ENST00000543016 IRAK4Q9NWZ3 460 aa11.64□□□□□ -0.55
DDX55-210ENST00000543016 PPT2Q9UMR5 302 aa11.64□□□□□ -0.55
DDX55-210ENST00000543016 TMEM184BQ9Y519 407 aaPredicted RBP11.64□□□□□ -0.55
DDX55-210ENST00000543016 TMEM114B3SHH9 223 aa11.63□□□□□ -0.55
DDX55-210ENST00000543016 H3BMH7 237 aa11.63□□□□□ -0.55
DDX55-210ENST00000543016 PRAMEF4O60810 478 aa11.63□□□□□ -0.55
DDX55-210ENST00000543016 CPNE3O75131 537 aaKnown RBP11.63□□□□□ -0.55
DDX55-210ENST00000543016 SCRG1O75711 98 aa11.63□□□□□ -0.55
DDX55-210ENST00000543016 KRT6AP02538 564 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms