RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 TNK1Q13470 666 aa8.57□□□□□ -1.04
USP28-205ENST00000537706 VEZF1Q14119 521 aa8.57□□□□□ -1.04
USP28-205ENST00000537706 USP10Q14694 798 aaKnown RBP8.57□□□□□ -1.04
USP28-205ENST00000537706 HADHQ16836 314 aaKnown RBP8.57□□□□□ -1.04
USP28-205ENST00000537706 TCP11X2Q5H9J9 407 aa8.57□□□□□ -1.04
USP28-205ENST00000537706 OR4N4Q8N0Y3 316 aa8.57□□□□□ -1.04
USP28-205ENST00000537706 C2orf73Q8N5S3 287 aaPredicted RBP8.57□□□□□ -1.04
USP28-205ENST00000537706 CNTD1Q8N815 330 aa8.57□□□□□ -1.04
USP28-205ENST00000537706 TC2NQ8N9U0 490 aa8.57□□□□□ -1.04
USP28-205ENST00000537706 TMEM171Q8WVE6 324 aa8.57□□□□□ -1.04
USP28-205ENST00000537706 GANQ9H2C0 597 aa8.57□□□□□ -1.04
USP28-205ENST00000537706 ZDHHC11Q9H8X9 412 aa8.57□□□□□ -1.04
USP28-205ENST00000537706 ZDHHC3Q9NYG2 299 aa8.57□□□□□ -1.04
USP28-205ENST00000537706 PHF3Q92576 2039 aaKnown RBP8.57□□□□□ -1.04
USP28-205ENST00000537706 A0A087X1B8 175 aa8.56□□□□□ -1.04
USP28-205ENST00000537706 A0A0A6YYC8 382 aaPredicted RBP8.56□□□□□ -1.04
USP28-205ENST00000537706 A0A0A6YYK5 440 aaPredicted RBP8.56□□□□□ -1.04
USP28-205ENST00000537706 A0A1B0GVC2 190 aa8.56□□□□□ -1.04
USP28-205ENST00000537706 EEF1E1-BLOC1S5C9J1V9 151 aa8.56□□□□□ -1.04
USP28-205ENST00000537706 RNF223E7ERA6 249 aa8.56□□□□□ -1.04
USP28-205ENST00000537706 I3L1I5 382 aaPredicted RBP8.56□□□□□ -1.04
USP28-205ENST00000537706 EEF1E1O43324 174 aaKnown RBP8.56□□□□□ -1.04
USP28-205ENST00000537706 SUSD5O60279 629 aa8.56□□□□□ -1.04
USP28-205ENST00000537706 EPOP01588 193 aa8.56□□□□□ -1.04
USP28-205ENST00000537706 IGHG3P01860 377 aa8.56□□□□□ -1.04
USP28-205ENST00000537706 FTH1P02794 183 aa8.56□□□□□ -1.04
USP28-205ENST00000537706 ACADLP28330 430 aa8.56□□□□□ -1.04
USP28-205ENST00000537706 PRKCIP41743 596 aa8.56□□□□□ -1.04
USP28-205ENST00000537706 JAM2P57087 298 aa8.56□□□□□ -1.04
USP28-205ENST00000537706 OR4D2P58180 307 aa8.56□□□□□ -1.04
USP28-205ENST00000537706 SLC26A5P58743 744 aa8.56□□□□□ -1.04
USP28-205ENST00000537706 MMRN1Q13201 1228 aa8.56□□□□□ -1.04
USP28-205ENST00000537706 TRIM14Q14142 442 aa8.56□□□□□ -1.04
USP28-205ENST00000537706 PIGHQ14442 188 aaPredicted RBP8.56□□□□□ -1.04
USP28-205ENST00000537706 KCTD11Q693B1 232 aa8.56□□□□□ -1.04
USP28-205ENST00000537706 GK5Q6ZS86 529 aa8.56□□□□□ -1.04
USP28-205ENST00000537706 TRILQ7L0X0 811 aa8.56□□□□□ -1.04
USP28-205ENST00000537706 CAND1Q86VP6 1230 aaKnown RBP8.56□□□□□ -1.04
USP28-205ENST00000537706 LIX1Q8N485 282 aa8.56□□□□□ -1.04
USP28-205ENST00000537706 FAM109AQ8N4B1 249 aa8.56□□□□□ -1.04
USP28-205ENST00000537706 SPATA22Q8NHS9 363 aa8.56□□□□□ -1.04
USP28-205ENST00000537706 ELMO1Q92556 727 aa8.56□□□□□ -1.04
USP28-205ENST00000537706 TADA1Q96BN2 335 aa8.56□□□□□ -1.04
USP28-205ENST00000537706 TRIM11Q96F44 468 aa8.56□□□□□ -1.04
USP28-205ENST00000537706 ZBED6CLQ96FA7 236 aaPredicted RBP8.56□□□□□ -1.04
USP28-205ENST00000537706 PANX2Q96RD6 677 aa8.56□□□□□ -1.04
USP28-205ENST00000537706 GLOD4Q9HC38 313 aa8.56□□□□□ -1.04
USP28-205ENST00000537706 ERVK-11Q9UQG0 969 aa8.56□□□□□ -1.04
USP28-205ENST00000537706 PCDHGB3Q9Y5G1 929 aa8.56□□□□□ -1.04
USP28-205ENST00000537706 PCDHA3Q9Y5H8 950 aa8.56□□□□□ -1.04
USP28-205ENST00000537706 TMCO5BA8MYB1 307 aa8.56□□□□□ -1.04
USP28-205ENST00000537706 H0YGG7 62 aa8.56□□□□□ -1.04
USP28-205ENST00000537706 MFAP3LO75121 409 aa8.56□□□□□ -1.04
USP28-205ENST00000537706 TPBGLP0DKB5 382 aa8.56□□□□□ -1.04
USP28-205ENST00000537706 CMPK1P30085 196 aa8.56□□□□□ -1.04
USP28-205ENST00000537706 ATP5J2P56134 94 aa8.56□□□□□ -1.04
USP28-205ENST00000537706 ARF3P61204 181 aaPredicted RBP8.56□□□□□ -1.04
USP28-205ENST00000537706 SIX1Q15475 284 aaPredicted RBP8.56□□□□□ -1.04
USP28-205ENST00000537706 SYT16Q17RD7 645 aa8.56□□□□□ -1.04
USP28-205ENST00000537706 GPR33Q49SQ1 333 aa8.56□□□□□ -1.04
USP28-205ENST00000537706 SIRPB2Q5JXA9 342 aa8.56□□□□□ -1.04
USP28-205ENST00000537706 LRRC8BQ6P9F7 803 aa8.56□□□□□ -1.04
USP28-205ENST00000537706 SNX20Q7Z614 316 aa8.56□□□□□ -1.04
USP28-205ENST00000537706 CNGA4Q8IV77 575 aa8.56□□□□□ -1.04
USP28-205ENST00000537706 GPALPP1Q8IXQ4 340 aa8.56□□□□□ -1.04
USP28-205ENST00000537706 AMER2Q8N7J2 671 aa8.56□□□□□ -1.04
USP28-205ENST00000537706 LMNTD1Q8N9Z9 388 aa8.56□□□□□ -1.04
USP28-205ENST00000537706 KCTD6Q8NC69 237 aa8.56□□□□□ -1.04
USP28-205ENST00000537706 LRRN4Q8WUT4 740 aa8.56□□□□□ -1.04
USP28-205ENST00000537706 BAG1Q99933 345 aaPredicted RBP8.56□□□□□ -1.04
USP28-205ENST00000537706 ZNF670Q9BS34 389 aa8.56□□□□□ -1.04
USP28-205ENST00000537706 DEFB126Q9BYW3 111 aa8.56□□□□□ -1.04
USP28-205ENST00000537706 FKBPLQ9UIM3 349 aa8.56□□□□□ -1.04
USP28-205ENST00000537706 RUVBL1Q9Y265 456 aaKnown RBP8.56□□□□□ -1.04
USP28-205ENST00000537706 KLK4Q9Y5K2 254 aa8.56□□□□□ -1.04
USP28-205ENST00000537706 NPFFR2Q9Y5X5 522 aa8.56□□□□□ -1.04
USP28-205ENST00000537706 NFS1Q9Y697 457 aa8.56□□□□□ -1.04
USP28-205ENST00000537706 LOC285095A0A1B0GVY8 99 aa8.55□□□□□ -1.04
USP28-205ENST00000537706 LGALS16A8MUM7 142 aa8.55□□□□□ -1.04
USP28-205ENST00000537706 AKR1B15C9JRZ8 316 aaPredicted RBP8.55□□□□□ -1.04
USP28-205ENST00000537706 H0YIG0 161 aa8.55□□□□□ -1.04
USP28-205ENST00000537706 PPP1R12AO14974 1030 aaPredicted RBP8.55□□□□□ -1.04
USP28-205ENST00000537706 HCN1O60741 890 aa8.55□□□□□ -1.04
USP28-205ENST00000537706 TPM1P09493 284 aa8.55□□□□□ -1.04
USP28-205ENST00000537706 WNT3AP56704 352 aa8.55□□□□□ -1.04
USP28-205ENST00000537706 MAT1AQ00266 395 aaKnown RBP8.55□□□□□ -1.04
USP28-205ENST00000537706 MEF2AQ02078 507 aaPredicted RBP8.55□□□□□ -1.04
USP28-205ENST00000537706 FAM53BQ14153 422 aa8.55□□□□□ -1.04
USP28-205ENST00000537706 SLC10A1Q14973 349 aa8.55□□□□□ -1.04
USP28-205ENST00000537706 BRD3Q15059 726 aa8.55□□□□□ -1.04
USP28-205ENST00000537706 PDK2Q15119 407 aa8.55□□□□□ -1.04
USP28-205ENST00000537706 NSDHLQ15738 373 aa8.55□□□□□ -1.04
USP28-205ENST00000537706 ZNF658BQ4V348 819 aaPredicted RBP8.55□□□□□ -1.04
USP28-205ENST00000537706 PLEKHM3Q6ZWE6 761 aa8.55□□□□□ -1.04
USP28-205ENST00000537706 BTLAQ7Z6A9 289 aa8.55□□□□□ -1.04
USP28-205ENST00000537706 ZNF227Q86WZ6 799 aa8.55□□□□□ -1.04
USP28-205ENST00000537706 DCUN1D3Q8IWE4 304 aa8.55□□□□□ -1.04
USP28-205ENST00000537706 OR4K2Q8NGD2 314 aa8.55□□□□□ -1.04
USP28-205ENST00000537706 ELP5Q8TE02 316 aa8.55□□□□□ -1.04
USP28-205ENST00000537706 HSPBAP1Q96EW2 488 aa8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms