RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), human

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-223	ENST00000526553	SPOUT1	Q5T280	376 aa	Known RBP	3.97	□□□□□ -1.77
CD44-223	ENST00000526553	SHE	Q5VZ18	495 aa		3.97	□□□□□ -1.77
CD44-223	ENST00000526553	OR4A47	Q6IF82	309 aa		3.97	□□□□□ -1.77
CD44-223	ENST00000526553	DOK6	Q6PKX4	331 aa		3.97	□□□□□ -1.77
CD44-223	ENST00000526553	LEKR1	Q6ZMV7	388 aa		3.97	□□□□□ -1.77
CD44-223	ENST00000526553	C4orf19	Q8IY42	314 aa		3.97	□□□□□ -1.77
CD44-223	ENST00000526553	CCDC170	Q8IYT3	715 aa		3.97	□□□□□ -1.77
CD44-223	ENST00000526553	OR6S1	Q8NH40	331 aa		3.97	□□□□□ -1.77
CD44-223	ENST00000526553	ANKRD9	Q96BM1	317 aa	Predicted RBP	3.97	□□□□□ -1.77
CD44-223	ENST00000526553	LPAR4	Q99677	370 aa		3.97	□□□□□ -1.77
CD44-223	ENST00000526553	PKP2	Q99959	881 aa		3.97	□□□□□ -1.77
CD44-223	ENST00000526553	INPP5K	Q9BT40	448 aa		3.97	□□□□□ -1.77
CD44-223	ENST00000526553	FUT8	Q9BYC5	575 aa		3.97	□□□□□ -1.77
CD44-223	ENST00000526553	PRRG4	Q9BZD6	226 aa		3.97	□□□□□ -1.77
CD44-223	ENST00000526553	DBNDD1	Q9H9R9	158 aa		3.97	□□□□□ -1.77
CD44-223	ENST00000526553	CHCHD3	Q9NX63	227 aa	Known RBP	3.97	□□□□□ -1.77
CD44-223	ENST00000526553	KNSTRN	Q9Y448	316 aa		3.97	□□□□□ -1.77
CD44-223	ENST00000526553	CASTOR2	A6NHX0	329 aa		3.96	□□□□□ -1.78
CD44-223	ENST00000526553	PALM2-AKAP2	B1ALY0	433 aa	Predicted RBP	3.96	□□□□□ -1.78
CD44-223	ENST00000526553	C2CD4D	B7Z1M9	353 aa		3.96	□□□□□ -1.78
CD44-223	ENST00000526553		E9PQ18	207 aa		3.96	□□□□□ -1.78
CD44-223	ENST00000526553	SLC30A4	O14863	429 aa		3.96	□□□□□ -1.78
CD44-223	ENST00000526553	MAGEC1	O60732	1142 aa		3.96	□□□□□ -1.78
CD44-223	ENST00000526553	GOSR1	O95249	250 aa		3.96	□□□□□ -1.78
CD44-223	ENST00000526553	VIM	P08670	466 aa	Known RBP	3.96	□□□□□ -1.78
CD44-223	ENST00000526553	SUPT20HL2	P0C7V6	817 aa		3.96	□□□□□ -1.78
CD44-223	ENST00000526553	ZSCAN5DP	P0CG00	497 aa		3.96	□□□□□ -1.78
CD44-223	ENST00000526553	CYP11B2	P19099	503 aa		3.96	□□□□□ -1.78
CD44-223	ENST00000526553	LHCGR	P22888	699 aa		3.96	□□□□□ -1.78
CD44-223	ENST00000526553	HLA-F	P30511	346 aa		3.96	□□□□□ -1.78
CD44-223	ENST00000526553	HNF4A	P41235	474 aa		3.96	□□□□□ -1.78
CD44-223	ENST00000526553	CSNK2B	P67870	215 aa		3.96	□□□□□ -1.78
CD44-223	ENST00000526553	MYL7	Q01449	175 aa		3.96	□□□□□ -1.78
CD44-223	ENST00000526553	UGCG	Q16739	394 aa		3.96	□□□□□ -1.78
CD44-223	ENST00000526553	SMU1	Q2TAY7	513 aa		3.96	□□□□□ -1.78
CD44-223	ENST00000526553	C2CD6	Q53TS8	623 aa		3.96	□□□□□ -1.78
CD44-223	ENST00000526553	TCTE1	Q5JU00	501 aa		3.96	□□□□□ -1.78
CD44-223	ENST00000526553	FAM91A1	Q658Y4	838 aa		3.96	□□□□□ -1.78
CD44-223	ENST00000526553	OTOA	Q7RTW8	1153 aa		3.96	□□□□□ -1.78
CD44-223	ENST00000526553	RYBP	Q8N488	228 aa	Predicted RBP	3.96	□□□□□ -1.78
CD44-223	ENST00000526553	RASGEF1A	Q8N9B8	481 aa		3.96	□□□□□ -1.78
CD44-223	ENST00000526553	SLC4A11	Q8NBS3	891 aa		3.96	□□□□□ -1.78
CD44-223	ENST00000526553	SLC37A3	Q8NCC5	494 aa		3.96	□□□□□ -1.78
CD44-223	ENST00000526553	PRSS33	Q8NF86	280 aa		3.96	□□□□□ -1.78
CD44-223	ENST00000526553	FIBIN	Q8TAL6	211 aa		3.96	□□□□□ -1.78
CD44-223	ENST00000526553	ZNF519	Q8TB69	540 aa		3.96	□□□□□ -1.78
CD44-223	ENST00000526553	PTP4A1	Q93096	173 aa		3.96	□□□□□ -1.78
CD44-223	ENST00000526553	NECTIN4	Q96NY8	510 aa		3.96	□□□□□ -1.78
CD44-223	ENST00000526553	MAP3K3	Q99759	626 aa		3.96	□□□□□ -1.78
CD44-223	ENST00000526553	PYGO2	Q9BRQ0	406 aa		3.96	□□□□□ -1.78
CD44-223	ENST00000526553	UPF3A	Q9H1J1	476 aa	Known RBP	3.96	□□□□□ -1.78
CD44-223	ENST00000526553	IL1RAPL2	Q9NP60	686 aa		3.96	□□□□□ -1.78
CD44-223	ENST00000526553	VPS18	Q9P253	973 aa		3.96	□□□□□ -1.78
CD44-223	ENST00000526553		R4GN57	208 aa		3.96	□□□□□ -1.78
CD44-223	ENST00000526553	IGSF1	Q8N6C5	1336 aa		3.95	□□□□□ -1.78
CD44-223	ENST00000526553	TRBV5-5	A0A0J9YX44	114 aa		3.95	□□□□□ -1.78
CD44-223	ENST00000526553		A0A1W2PR80	420 aa		3.95	□□□□□ -1.78
CD44-223	ENST00000526553	TEX28	O15482	410 aa		3.95	□□□□□ -1.78
CD44-223	ENST00000526553	ACSL3	O95573	720 aa		3.95	□□□□□ -1.78
CD44-223	ENST00000526553	SOAT1	P35610	550 aa		3.95	□□□□□ -1.78
CD44-223	ENST00000526553	UBXN1	Q04323	297 aa		3.95	□□□□□ -1.78
CD44-223	ENST00000526553	MZT1	Q08AG7	82 aa		3.95	□□□□□ -1.78
CD44-223	ENST00000526553	TRAP1	Q12931	704 aa	Known RBP	3.95	□□□□□ -1.78
CD44-223	ENST00000526553	NFE2L1	Q14494	772 aa		3.95	□□□□□ -1.78
CD44-223	ENST00000526553	NECTIN1	Q15223	517 aa		3.95	□□□□□ -1.78
CD44-223	ENST00000526553	EXT1	Q16394	746 aa		3.95	□□□□□ -1.78
CD44-223	ENST00000526553	CDO1	Q16878	200 aa		3.95	□□□□□ -1.78
CD44-223	ENST00000526553	ZNF674	Q2M3X9	581 aa		3.95	□□□□□ -1.78
CD44-223	ENST00000526553	C2orf76	Q3KRA6	126 aa		3.95	□□□□□ -1.78
CD44-223	ENST00000526553	ANKRD20A4	Q4UJ75	823 aa		3.95	□□□□□ -1.78
CD44-223	ENST00000526553	ANKRD20A8P	Q5CZ79	823 aa		3.95	□□□□□ -1.78
CD44-223	ENST00000526553	GLRA4	Q5JXX5	417 aa		3.95	□□□□□ -1.78
CD44-223	ENST00000526553	ANKRD20A2	Q5SQ80	823 aa		3.95	□□□□□ -1.78
CD44-223	ENST00000526553	ANKRD20A1	Q5TYW2	823 aa		3.95	□□□□□ -1.78
CD44-223	ENST00000526553	ANKRD20A3	Q5VUR7	823 aa		3.95	□□□□□ -1.78
CD44-223	ENST00000526553	PLBD1	Q6P4A8	553 aa		3.95	□□□□□ -1.78
CD44-223	ENST00000526553	IL17REL	Q6ZVW7	336 aa		3.95	□□□□□ -1.78
CD44-223	ENST00000526553	TLK2	Q86UE8	772 aa		3.95	□□□□□ -1.78
CD44-223	ENST00000526553	DZIP1	Q86YF9	867 aa	Known RBP	3.95	□□□□□ -1.78
CD44-223	ENST00000526553	LYG1	Q8N1E2	194 aa		3.95	□□□□□ -1.78
CD44-223	ENST00000526553	CARNMT1	Q8N4J0	409 aa		3.95	□□□□□ -1.78
CD44-223	ENST00000526553	NOA1	Q8NC60	698 aa	Known RBP	3.95	□□□□□ -1.78
CD44-223	ENST00000526553	OTUB1	Q96FW1	271 aa	Predicted RBP	3.95	□□□□□ -1.78
CD44-223	ENST00000526553	ZNF486	Q96H40	463 aa	Predicted RBP	3.95	□□□□□ -1.78
CD44-223	ENST00000526553	ZNF300	Q96RE9	604 aa	Predicted RBP	3.95	□□□□□ -1.78
CD44-223	ENST00000526553	PIGQ	Q9BRB3	760 aa		3.95	□□□□□ -1.78
CD44-223	ENST00000526553	MED20	Q9H944	212 aa		3.95	□□□□□ -1.78
CD44-223	ENST00000526553	GSN-AS1	Q9NRJ2	163 aa		3.95	□□□□□ -1.78
CD44-223	ENST00000526553	ABCB8	Q9NUT2	735 aa		3.95	□□□□□ -1.78
CD44-223	ENST00000526553	ARMCX3	Q9UH62	379 aa	Predicted RBP	3.95	□□□□□ -1.78
CD44-223	ENST00000526553	CHKB	Q9Y259	395 aa		3.95	□□□□□ -1.78
CD44-223	ENST00000526553	PCNX3	Q9H6A9	2034 aa		3.94	□□□□□ -1.78
CD44-223	ENST00000526553		A0A087WUV0	522 aa	Predicted RBP	3.94	□□□□□ -1.78
CD44-223	ENST00000526553	TRAV24	A0A0B4J272	114 aa		3.94	□□□□□ -1.78
CD44-223	ENST00000526553	LRRD1	A4D1F6	860 aa		3.94	□□□□□ -1.78
CD44-223	ENST00000526553	MPTX1	A8MV57	137 aa		3.94	□□□□□ -1.78
CD44-223	ENST00000526553	FPGT	O14772	594 aa		3.94	□□□□□ -1.78
CD44-223	ENST00000526553	ZNF263	O14978	683 aa		3.94	□□□□□ -1.78
CD44-223	ENST00000526553	FAM58BP	P0C7Q3	252 aa		3.94	□□□□□ -1.78
CD44-223	ENST00000526553	CD27	P26842	260 aa		3.94	□□□□□ -1.78

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