RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 KLHL12Q53G59 568 aa8.15□□□□□ -1.11
LIMCH1-216ENST00000512820 RUNDC3AQ59EK9 446 aa8.15□□□□□ -1.11
LIMCH1-216ENST00000512820 XKR4Q5GH76 650 aa8.15□□□□□ -1.11
LIMCH1-216ENST00000512820 C9orf64Q5T6V5 341 aa8.15□□□□□ -1.11
LIMCH1-216ENST00000512820 NCEH1Q6PIU2 408 aa8.15□□□□□ -1.11
LIMCH1-216ENST00000512820 DSG4Q86SJ6 1040 aa8.15□□□□□ -1.11
LIMCH1-216ENST00000512820 BEND7Q8N7W2 519 aaPredicted RBP8.15□□□□□ -1.11
LIMCH1-216ENST00000512820 SLC43A3Q8NBI5 491 aa8.15□□□□□ -1.11
LIMCH1-216ENST00000512820 BTN2A2Q8WVV5 523 aa8.15□□□□□ -1.11
LIMCH1-216ENST00000512820 MRPL48Q96GC5 212 aaKnown RBP8.15□□□□□ -1.11
LIMCH1-216ENST00000512820 DOHHQ9BU89 302 aa8.15□□□□□ -1.11
LIMCH1-216ENST00000512820 RIOK2Q9BVS4 552 aaKnown RBP8.15□□□□□ -1.11
LIMCH1-216ENST00000512820 CTPS2Q9NRF8 586 aa8.15□□□□□ -1.11
LIMCH1-216ENST00000512820 RHCGQ9UBD6 479 aa8.15□□□□□ -1.11
LIMCH1-216ENST00000512820 AASSQ9UDR5 926 aa8.15□□□□□ -1.11
LIMCH1-216ENST00000512820 LOXHD1Q8IVV2 1947 aa8.15□□□□□ -1.11
LIMCH1-216ENST00000512820 CITO14578 2027 aa8.15□□□□□ -1.11
LIMCH1-216ENST00000512820 A0A1B0GW55 424 aa8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 PRMT3O60678 531 aa8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 C6orf47O95873 294 aa8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 DUX4L2P0CJ85 424 aa8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 DUX4L3P0CJ86 424 aa8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 DUX4L4P0CJ87 422 aa8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 DUX4L5P0CJ88 424 aa8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 DUX4L6P0CJ89 424 aa8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 DUX4L7P0CJ90 424 aa8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 BDKRB1P46663 353 aa8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 RPS13P62277 151 aaKnown RBP8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 PRKCZQ05513 592 aa8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 STX4Q12846 297 aa8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 CBX2Q14781 532 aaPredicted RBP8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 HEPACAMQ14CZ8 416 aa8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 PGBD5Q8N414 524 aa8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 OR2T11Q8NH01 316 aa8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 ART5Q96L15 291 aa8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 EFCAB11Q9BUY7 163 aa8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 RETREG1Q9H6L5 497 aa8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 EQTNQ9NQ60 294 aa8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 DUX4Q9UBX2 424 aa8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 UNCXA6NJT0 531 aa8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 SLC9A3R1O14745 358 aaPredicted RBP8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 KLK1P06870 262 aa8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 SLC35G4P0C7Q5 338 aa8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 PRG2P13727 222 aa8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 FUT4P22083 530 aa8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 IGFBP6P24592 240 aaPredicted RBP8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 MYL9P24844 172 aa8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 GATMP50440 423 aa8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 RAB25P57735 213 aa8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 BICRALQ6AI39 1079 aa8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 FGD2Q7Z6J4 655 aa8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 CDH24Q86UP0 819 aa8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 ZSWIM9Q86XI8 627 aa8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 PTRH1Q86Y79 214 aaKnown RBP8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 SUSD6Q92537 303 aa8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 GTF2H4Q92759 462 aa8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 TEX37Q96LM6 180 aa8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 GFM1Q96RP9 751 aaKnown RBP8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 UHRF1Q96T88 793 aaPredicted RBP8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 TBC1D17Q9HA65 648 aa8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 PRDM8Q9NQV8 689 aa8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 OSER1Q9NX31 292 aa8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 GPRC5BQ9NZH0 403 aa8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 IL17CQ9P0M4 197 aa8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 B3GNT3Q9Y2A9 372 aa8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 PCDHB11Q9Y5F2 797 aa8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 K7ERQ8 282 aa8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 PDPK1O15530 556 aa8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 GPR39O43194 453 aa8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 STC2O76061 302 aa8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 SOX14O95416 240 aa8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 HOXC13P31276 330 aa8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 SGCGQ13326 291 aa8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 SP140Q13342 867 aa8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 C10orf62Q5T681 223 aaPredicted RBP8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 ZNF697Q5TEC3 545 aa8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 CCBE1Q6UXH8 406 aaPredicted RBP8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 SNX29P2Q8IUI4 249 aa8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 RHBDF1Q96CC6 855 aa8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 DUS3LQ96G46 650 aaKnown RBP8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 FEVQ99581 238 aa8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 UCK2Q9BZX2 261 aa8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 TRIT1Q9H3H1 467 aaKnown RBP8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 TMEM39AQ9NV64 488 aa8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 C14orf119Q9NWQ9 140 aa8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 SESN1Q9Y6P5 492 aa8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 COL24A1Q17RW2 1714 aa8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 PITPNM1O00562 1244 aa8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 MUSKO15146 869 aa8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 RFPL2O75678 378 aa8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 SRPRAP08240 638 aaKnown RBP8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 CSTF2P33240 577 aaKnown RBP eCLIP8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 RYKP34925 604 aa8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 RGRP47804 291 aa8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 PSMD8P48556 350 aa8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 CCT3P49368 545 aaKnown RBP8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 CENPAP49450 140 aa8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 ZNF630Q2M218 657 aaPredicted RBP8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 SMU1Q2TAY7 513 aa8.14□□□□□ -1.11
LIMCH1-216ENST00000512820 KLHL22Q53GT1 634 aa8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms