RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 SDC2P34741 201 aa10.43□□□□□ -0.74
LIMCH1-205ENST00000503057 TM4SF4P48230 202 aa10.43□□□□□ -0.74
LIMCH1-205ENST00000503057 KLHL12Q53G59 568 aa10.43□□□□□ -0.74
LIMCH1-205ENST00000503057 EIPR1Q53HC9 387 aa10.43□□□□□ -0.74
LIMCH1-205ENST00000503057 CAMKK1Q8N5S9 505 aa10.43□□□□□ -0.74
LIMCH1-205ENST00000503057 SCRN2Q96FV2 425 aa10.43□□□□□ -0.74
LIMCH1-205ENST00000503057 TRMT2BQ96GJ1 504 aaKnown RBP10.43□□□□□ -0.74
LIMCH1-205ENST00000503057 BIRC8Q96P09 236 aa10.43□□□□□ -0.74
LIMCH1-205ENST00000503057 BOCQ9BWV1 1114 aa10.43□□□□□ -0.74
LIMCH1-205ENST00000503057 BRINP2Q9C0B6 783 aa10.43□□□□□ -0.74
LIMCH1-205ENST00000503057 POLR2J3Q9H1A7 115 aaKnown RBP10.43□□□□□ -0.74
LIMCH1-205ENST00000503057 RDH14Q9HBH5 336 aa10.43□□□□□ -0.74
LIMCH1-205ENST00000503057 TMEM27Q9HBJ8 222 aa10.43□□□□□ -0.74
LIMCH1-205ENST00000503057 ANKHQ9HCJ1 492 aa10.43□□□□□ -0.74
LIMCH1-205ENST00000503057 IL1RAPQ9NPH3 570 aa10.43□□□□□ -0.74
LIMCH1-205ENST00000503057 ZSCAN32Q9NX65 697 aa10.43□□□□□ -0.74
LIMCH1-205ENST00000503057 PHF24Q9UPV7 400 aa10.43□□□□□ -0.74
LIMCH1-205ENST00000503057 COQ6Q9Y2Z9 468 aa10.43□□□□□ -0.74
LIMCH1-205ENST00000503057 MMP20O60882 483 aa10.43□□□□□ -0.74
LIMCH1-205ENST00000503057 NUDT14O95848 222 aa10.43□□□□□ -0.74
LIMCH1-205ENST00000503057 C6orf47O95873 294 aa10.43□□□□□ -0.74
LIMCH1-205ENST00000503057 ALPPP05187 535 aa10.43□□□□□ -0.74
LIMCH1-205ENST00000503057 MPIP34949 423 aa10.43□□□□□ -0.74
LIMCH1-205ENST00000503057 GABARAPL2P60520 117 aa10.43□□□□□ -0.74
LIMCH1-205ENST00000503057 DSC1Q08554 894 aa10.43□□□□□ -0.74
LIMCH1-205ENST00000503057 RCAN2Q14206 197 aa10.43□□□□□ -0.74
LIMCH1-205ENST00000503057 VMACQ2NL98 169 aa10.43□□□□□ -0.74
LIMCH1-205ENST00000503057 C18orf21Q32NC0 220 aaPredicted RBP10.43□□□□□ -0.74
LIMCH1-205ENST00000503057 UGT2A3Q6UWM9 527 aa10.43□□□□□ -0.74
LIMCH1-205ENST00000503057 TCEAL8Q8IYN2 117 aa10.43□□□□□ -0.74
LIMCH1-205ENST00000503057 NRSN1Q8IZ57 195 aa10.43□□□□□ -0.74
LIMCH1-205ENST00000503057 SLC2A11Q9BYW1 496 aa10.43□□□□□ -0.74
LIMCH1-205ENST00000503057 HAT1O14929 419 aa10.43□□□□□ -0.74
LIMCH1-205ENST00000503057 TSPAN6O43657 245 aa10.43□□□□□ -0.74
LIMCH1-205ENST00000503057 FSHRP23945 695 aa10.43□□□□□ -0.74
LIMCH1-205ENST00000503057 SPINT3P49223 89 aa10.43□□□□□ -0.74
LIMCH1-205ENST00000503057 HLCSP50747 726 aa10.43□□□□□ -0.74
LIMCH1-205ENST00000503057 TUBA1BP68363 451 aa10.43□□□□□ -0.74
LIMCH1-205ENST00000503057 OTUD1Q5VV17 481 aaPredicted RBP10.43□□□□□ -0.74
LIMCH1-205ENST00000503057 CRTC1Q6UUV9 634 aa10.43□□□□□ -0.74
LIMCH1-205ENST00000503057 TUBA1AQ71U36 451 aa10.43□□□□□ -0.74
LIMCH1-205ENST00000503057 VN1R5Q7Z5H4 357 aa10.43□□□□□ -0.74
LIMCH1-205ENST00000503057 TFGQ92734 400 aaPredicted RBP10.43□□□□□ -0.74
LIMCH1-205ENST00000503057 HPS1Q92902 700 aa10.43□□□□□ -0.74
LIMCH1-205ENST00000503057 SLC12A9Q9BXP2 914 aa10.43□□□□□ -0.74
LIMCH1-205ENST00000503057 RIMS3Q9UJD0 308 aa10.43□□□□□ -0.74
LIMCH1-205ENST00000503057 SNX7Q9UNH6 387 aa10.43□□□□□ -0.74
LIMCH1-205ENST00000503057 MYOCOSA0A1B0GUC4 107 aa10.42□□□□□ -0.74
LIMCH1-205ENST00000503057 TEX28O15482 410 aa10.42□□□□□ -0.74
LIMCH1-205ENST00000503057 XKP51811 444 aa10.42□□□□□ -0.74
LIMCH1-205ENST00000503057 PPP1R8Q12972 351 aaKnown RBP10.42□□□□□ -0.74
LIMCH1-205ENST00000503057 KCNAB2Q13303 367 aa10.42□□□□□ -0.74
LIMCH1-205ENST00000503057 ZNF829Q3KNS6 432 aaPredicted RBP10.42□□□□□ -0.74
LIMCH1-205ENST00000503057 LAPTM4BQ86VI4 370 aa10.42□□□□□ -0.74
LIMCH1-205ENST00000503057 BPIFB1Q8TDL5 484 aa10.42□□□□□ -0.74
LIMCH1-205ENST00000503057 RHBDF1Q96CC6 855 aa10.42□□□□□ -0.74
LIMCH1-205ENST00000503057 SRMSQ9H3Y6 488 aa10.42□□□□□ -0.74
LIMCH1-205ENST00000503057 TLR4O00206 839 aa10.42□□□□□ -0.74
LIMCH1-205ENST00000503057 TNFRSF10BO14763 440 aa10.42□□□□□ -0.74
LIMCH1-205ENST00000503057 KMOO15229 486 aa10.42□□□□□ -0.74
LIMCH1-205ENST00000503057 B3GALT2O43825 422 aa10.42□□□□□ -0.74
LIMCH1-205ENST00000503057 BCHEP06276 602 aa10.42□□□□□ -0.74
LIMCH1-205ENST00000503057 LAMP2P13473 410 aa10.42□□□□□ -0.74
LIMCH1-205ENST00000503057 TIA1P31483 386 aaKnown RBP eCLIP10.42□□□□□ -0.74
LIMCH1-205ENST00000503057 HTR6P50406 440 aa10.42□□□□□ -0.74
LIMCH1-205ENST00000503057 GSTM4Q03013 218 aa10.42□□□□□ -0.74
LIMCH1-205ENST00000503057 LSAMPQ13449 338 aa10.42□□□□□ -0.74
LIMCH1-205ENST00000503057 SLC8B1Q6J4K2 584 aa10.42□□□□□ -0.74
LIMCH1-205ENST00000503057 ANKRD26P1Q6NSI1 321 aa10.42□□□□□ -0.74
LIMCH1-205ENST00000503057 ZNF366Q8N895 744 aa10.42□□□□□ -0.74
LIMCH1-205ENST00000503057 SCAMP4Q969E2 229 aa10.42□□□□□ -0.74
LIMCH1-205ENST00000503057 DNAAF2Q9NVR5 837 aaKnown RBP10.42□□□□□ -0.74
LIMCH1-205ENST00000503057 GPR45Q9Y5Y3 372 aa10.42□□□□□ -0.74
LIMCH1-205ENST00000503057 M0QX08 132 aa10.42□□□□□ -0.74
LIMCH1-205ENST00000503057 CLPXO76031 633 aa10.42□□□□□ -0.74
LIMCH1-205ENST00000503057 RASGRP1O95267 797 aa10.42□□□□□ -0.74
LIMCH1-205ENST00000503057 H1F0P07305 194 aaKnown RBP10.42□□□□□ -0.74
LIMCH1-205ENST00000503057 NDUFS1P28331 727 aa10.42□□□□□ -0.74
LIMCH1-205ENST00000503057 CD70P32970 193 aa10.42□□□□□ -0.74
LIMCH1-205ENST00000503057 CSNK1DP48730 415 aa10.42□□□□□ -0.74
LIMCH1-205ENST00000503057 SEC13P55735 322 aa10.42□□□□□ -0.74
LIMCH1-205ENST00000503057 ZNF311Q5JNZ3 666 aa10.42□□□□□ -0.74
LIMCH1-205ENST00000503057 DDX59Q5T1V6 619 aaKnown RBP eCLIP10.42□□□□□ -0.74
LIMCH1-205ENST00000503057 MANEALQ5VSG8 457 aa10.42□□□□□ -0.74
LIMCH1-205ENST00000503057 NADSYN1Q6IA69 706 aa10.42□□□□□ -0.74
LIMCH1-205ENST00000503057 CEACAM20Q6UY09 585 aa10.42□□□□□ -0.74
LIMCH1-205ENST00000503057 GRASPQ7Z6J2 395 aaPredicted RBP10.42□□□□□ -0.74
LIMCH1-205ENST00000503057 PEX5LQ8IYB4 626 aa10.42□□□□□ -0.74
LIMCH1-205ENST00000503057 SLC22A18Q96BI1 424 aa10.42□□□□□ -0.74
LIMCH1-205ENST00000503057 OR51B5Q9H339 312 aa10.42□□□□□ -0.74
LIMCH1-205ENST00000503057 ZCCHC3Q9NUD5 404 aaKnown RBP10.42□□□□□ -0.74
LIMCH1-205ENST00000503057 GPRC5BQ9NZH0 403 aa10.42□□□□□ -0.74
LIMCH1-205ENST00000503057 PCDHB11Q9Y5F2 797 aa10.42□□□□□ -0.74
LIMCH1-205ENST00000503057 DUXAA6NLW8 204 aa10.42□□□□□ -0.74
LIMCH1-205ENST00000503057 ACP5P13686 325 aa10.42□□□□□ -0.74
LIMCH1-205ENST00000503057 GSTM3P21266 225 aa10.42□□□□□ -0.74
LIMCH1-205ENST00000503057 NT5EP21589 574 aa10.42□□□□□ -0.74
LIMCH1-205ENST00000503057 PAGE3Q5JUK9 113 aa10.42□□□□□ -0.74
LIMCH1-205ENST00000503057 USP30Q70CQ3 517 aa10.42□□□□□ -0.74
LIMCH1-205ENST00000503057 OR10Q1Q8NGQ4 319 aa10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms