RNA–Protein interactions for RNA: ENST00000494464.5

ERCC3-209, Transcript of ERCC excision repair 3, TFIIH core complex helicase subunit, humanhuman

TSL 1 (best)

Gene ERCC3, Length 1,367 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3-209ENST00000494464 NSRP1Q9H0G5 558 aaKnown RBP12.6□□□□□ -0.39
ERCC3-209ENST00000494464 SLC26A1Q9H2B4 701 aa12.6□□□□□ -0.39
ERCC3-209ENST00000494464 MLXIPLQ9NP71 852 aa12.6□□□□□ -0.39
ERCC3-209ENST00000494464 SLC22A11Q9NSA0 550 aa12.6□□□□□ -0.39
ERCC3-209ENST00000494464 UTP6Q9NYH9 597 aaKnown RBP12.6□□□□□ -0.39
ERCC3-209ENST00000494464 SLC17A6Q9P2U8 582 aa12.6□□□□□ -0.39
ERCC3-209ENST00000494464 PTRH2Q9Y3E5 179 aaKnown RBP12.6□□□□□ -0.39
ERCC3-209ENST00000494464 SPENQ96T58 3664 aaKnown RBP12.6□□□□□ -0.39
ERCC3-209ENST00000494464 TRIM49D1C9J1S8 452 aa12.59□□□□□ -0.39
ERCC3-209ENST00000494464 K7EM74 188 aa12.59□□□□□ -0.39
ERCC3-209ENST00000494464 SLC16A5O15375 505 aa12.59□□□□□ -0.39
ERCC3-209ENST00000494464 PIAS1O75925 651 aa12.59□□□□□ -0.39
ERCC3-209ENST00000494464 IGHEP01854 428 aa12.59□□□□□ -0.39
ERCC3-209ENST00000494464 ALAS2P22557 587 aa12.59□□□□□ -0.39
ERCC3-209ENST00000494464 FDXRP22570 491 aa12.59□□□□□ -0.39
ERCC3-209ENST00000494464 WDR4P57081 412 aaKnown RBP12.59□□□□□ -0.39
ERCC3-209ENST00000494464 SLC9A5Q14940 896 aa12.59□□□□□ -0.39
ERCC3-209ENST00000494464 WASHC2DQ5SRD0 308 aa12.59□□□□□ -0.39
ERCC3-209ENST00000494464 PAQR3Q6TCH7 311 aa12.59□□□□□ -0.39
ERCC3-209ENST00000494464 ASB18Q6ZVZ8 466 aa12.59□□□□□ -0.39
ERCC3-209ENST00000494464 OVCH1Q7RTY7 1134 aa12.59□□□□□ -0.39
ERCC3-209ENST00000494464 SPNS2Q8IVW8 549 aa12.59□□□□□ -0.39
ERCC3-209ENST00000494464 MYO1HQ8N1T3 1032 aa12.59□□□□□ -0.39
ERCC3-209ENST00000494464 PPFIBP2Q8ND30 876 aa12.59□□□□□ -0.39
ERCC3-209ENST00000494464 MGARPQ8TDB4 240 aa12.59□□□□□ -0.39
ERCC3-209ENST00000494464 EEF1AKMT1Q8WVE0 214 aa12.59□□□□□ -0.39
ERCC3-209ENST00000494464 NACC2Q96BF6 587 aa12.59□□□□□ -0.39
ERCC3-209ENST00000494464 PTERQ96BW5 349 aa12.59□□□□□ -0.39
ERCC3-209ENST00000494464 SLC25A23Q9BV35 468 aa12.59□□□□□ -0.39
ERCC3-209ENST00000494464 CCDC177Q9NQR7 707 aaPredicted RBP12.59□□□□□ -0.39
ERCC3-209ENST00000494464 NSMCE4AQ9NXX6 385 aa12.59□□□□□ -0.39
ERCC3-209ENST00000494464 STOX2Q9P2F5 926 aaPredicted RBP12.59□□□□□ -0.39
ERCC3-209ENST00000494464 NXT1Q9UKK6 140 aaKnown RBP12.59□□□□□ -0.39
ERCC3-209ENST00000494464 PCDHGB7Q9Y5F8 929 aa12.59□□□□□ -0.39
ERCC3-209ENST00000494464 CCDC88CQ9P219 2028 aa12.59□□□□□ -0.39
ERCC3-209ENST00000494464 MDC1Q14676 2089 aaKnown RBP12.59□□□□□ -0.39
ERCC3-209ENST00000494464 MED13Q9UHV7 2174 aa12.58□□□□□ -0.39
ERCC3-209ENST00000494464 LOC105369274A0A096LPK9 316 aa12.58□□□□□ -0.4
ERCC3-209ENST00000494464 LOC102723532A0A0G2JNH3 316 aa12.58□□□□□ -0.4
ERCC3-209ENST00000494464 HYKKA2RU49 373 aa12.58□□□□□ -0.4
ERCC3-209ENST00000494464 SPAG7O75391 227 aa12.58□□□□□ -0.4
ERCC3-209ENST00000494464 WISP1O95388 367 aa12.58□□□□□ -0.4
ERCC3-209ENST00000494464 TSPAN12O95859 305 aa12.58□□□□□ -0.4
ERCC3-209ENST00000494464 PDGFAP04085 211 aa12.58□□□□□ -0.4
ERCC3-209ENST00000494464 UMODP07911 640 aa12.58□□□□□ -0.4
ERCC3-209ENST00000494464 OTX2P32243 289 aa12.58□□□□□ -0.4
ERCC3-209ENST00000494464 GP5P40197 560 aa12.58□□□□□ -0.4
ERCC3-209ENST00000494464 PGDP52209 483 aa12.58□□□□□ -0.4
ERCC3-209ENST00000494464 TBPL1P62380 186 aa12.58□□□□□ -0.4
ERCC3-209ENST00000494464 TLE1Q04724 770 aa12.58□□□□□ -0.4
ERCC3-209ENST00000494464 PDAP1Q13442 181 aaKnown RBP12.58□□□□□ -0.4
ERCC3-209ENST00000494464 TSTA3Q13630 321 aaPredicted RBP12.58□□□□□ -0.4
ERCC3-209ENST00000494464 MUM1Q2TAK8 710 aa12.58□□□□□ -0.4
ERCC3-209ENST00000494464 PRTGQ2VWP7 1150 aa12.58□□□□□ -0.4
ERCC3-209ENST00000494464 HECTD2Q5U5R9 776 aa12.58□□□□□ -0.4
ERCC3-209ENST00000494464 PRMT9Q6P2P2 845 aa12.58□□□□□ -0.4
ERCC3-209ENST00000494464 FBXO42Q6P3S6 717 aa12.58□□□□□ -0.4
ERCC3-209ENST00000494464 OR4N4Q8N0Y3 316 aa12.58□□□□□ -0.4
ERCC3-209ENST00000494464 MCOLN3Q8TDD5 553 aa12.58□□□□□ -0.4
ERCC3-209ENST00000494464 ACMSDQ8TDX5 336 aa12.58□□□□□ -0.4
ERCC3-209ENST00000494464 ISL2Q96A47 359 aa12.58□□□□□ -0.4
ERCC3-209ENST00000494464 MVB12AQ96EY5 273 aa12.58□□□□□ -0.4
ERCC3-209ENST00000494464 LINGO1Q96FE5 620 aa12.58□□□□□ -0.4
ERCC3-209ENST00000494464 C10orf90Q96M02 699 aa12.58□□□□□ -0.4
ERCC3-209ENST00000494464 FER1L6-AS2Q96M78 137 aa12.58□□□□□ -0.4
ERCC3-209ENST00000494464 CCDC138Q96M89 665 aa12.58□□□□□ -0.4
ERCC3-209ENST00000494464 SPSB2Q99619 263 aa12.58□□□□□ -0.4
ERCC3-209ENST00000494464 CPNE1Q99829 537 aa12.58□□□□□ -0.4
ERCC3-209ENST00000494464 TRIM4Q9C037 500 aa12.58□□□□□ -0.4
ERCC3-209ENST00000494464 PCBD2Q9H0N5 130 aa12.58□□□□□ -0.4
ERCC3-209ENST00000494464 PARVBQ9HBI1 364 aa12.58□□□□□ -0.4
ERCC3-209ENST00000494464 ZFATQ9P243 1243 aa12.58□□□□□ -0.4
ERCC3-209ENST00000494464 ADAMTS6Q9UKP5 1117 aa12.58□□□□□ -0.4
ERCC3-209ENST00000494464 PDE10AQ9Y233 779 aa12.58□□□□□ -0.4
ERCC3-209ENST00000494464 TENM4Q6N022 2769 aa12.58□□□□□ -0.4
ERCC3-209ENST00000494464 ANKRD12Q6UB98 2062 aa12.58□□□□□ -0.4
ERCC3-209ENST00000494464 TNRC6AQ8NDV7 1962 aaKnown RBP12.58□□□□□ -0.4
ERCC3-209ENST00000494464 H0YGG7 62 aa12.57□□□□□ -0.4
ERCC3-209ENST00000494464 MED26O95402 600 aa12.57□□□□□ -0.4
ERCC3-209ENST00000494464 HRH2P25021 359 aa12.57□□□□□ -0.4
ERCC3-209ENST00000494464 CCT5P48643 541 aa12.57□□□□□ -0.4
ERCC3-209ENST00000494464 CSRP3P50461 194 aa12.57□□□□□ -0.4
ERCC3-209ENST00000494464 CCL11P51671 97 aa12.57□□□□□ -0.4
ERCC3-209ENST00000494464 IL2P60568 153 aa12.57□□□□□ -0.4
ERCC3-209ENST00000494464 ARF3P61204 181 aaPredicted RBP12.57□□□□□ -0.4
ERCC3-209ENST00000494464 ILF2Q12905 390 aaKnown RBP12.57□□□□□ -0.4
ERCC3-209ENST00000494464 NKG7Q16617 165 aa12.57□□□□□ -0.4
ERCC3-209ENST00000494464 PDK4Q16654 411 aa12.57□□□□□ -0.4
ERCC3-209ENST00000494464 GRTP1Q5TC63 336 aa12.57□□□□□ -0.4
ERCC3-209ENST00000494464 THEMIS2Q5TEJ8 643 aa12.57□□□□□ -0.4
ERCC3-209ENST00000494464 GARNL3Q5VVW2 1013 aa12.57□□□□□ -0.4
ERCC3-209ENST00000494464 PRAMEF13Q5VWM6 474 aa12.57□□□□□ -0.4
ERCC3-209ENST00000494464 PPP1R32Q7Z5V6 425 aa12.57□□□□□ -0.4
ERCC3-209ENST00000494464 CPLX4Q7Z7G2 160 aa12.57□□□□□ -0.4
ERCC3-209ENST00000494464 HPS6Q86YV9 775 aa12.57□□□□□ -0.4
ERCC3-209ENST00000494464 LRRC34Q8IZ02 419 aa12.57□□□□□ -0.4
ERCC3-209ENST00000494464 GPATCH11Q8N954 259 aa12.57□□□□□ -0.4
ERCC3-209ENST00000494464 OR2A5Q96R48 311 aa12.57□□□□□ -0.4
ERCC3-209ENST00000494464 OLFM1Q99784 485 aa12.57□□□□□ -0.4
ERCC3-209ENST00000494464 G3BP2Q9UN86 482 aaKnown RBP12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms