RNA–Protein interactions for RNA: ENST00000486741.5

HMGN1-216, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 4,299 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-216ENST00000486741 GATA6Q92908 595 aa12.79□□□□□ -0.36
HMGN1-216ENST00000486741 COL21A1Q96P44 957 aa12.79□□□□□ -0.36
HMGN1-216ENST00000486741 F2RL3Q96RI0 385 aa12.79□□□□□ -0.36
HMGN1-216ENST00000486741 ZNF607Q96SK3 696 aa12.79□□□□□ -0.36
HMGN1-216ENST00000486741 C17orf62Q9BQA9 187 aa12.79□□□□□ -0.36
HMGN1-216ENST00000486741 BRINP2Q9C0B6 783 aa12.79□□□□□ -0.36
HMGN1-216ENST00000486741 TPK1Q9H3S4 243 aa12.79□□□□□ -0.36
HMGN1-216ENST00000486741 OR7A17O14581 309 aa12.79□□□□□ -0.36
HMGN1-216ENST00000486741 NADKO95544 446 aaPredicted RBP12.79□□□□□ -0.36
HMGN1-216ENST00000486741 HSD17B1P14061 328 aa12.79□□□□□ -0.36
HMGN1-216ENST00000486741 JUPP14923 745 aa12.79□□□□□ -0.36
HMGN1-216ENST00000486741 HTR1EP28566 365 aa12.79□□□□□ -0.36
HMGN1-216ENST00000486741 IHHQ14623 411 aa12.79□□□□□ -0.36
HMGN1-216ENST00000486741 LIPIQ6XZB0 460 aa12.79□□□□□ -0.36
HMGN1-216ENST00000486741 ARMC8Q8IUR7 673 aa12.79□□□□□ -0.36
HMGN1-216ENST00000486741 KAT2AQ92830 837 aa12.79□□□□□ -0.36
HMGN1-216ENST00000486741 ZSWIM3Q96MP5 696 aa12.79□□□□□ -0.36
HMGN1-216ENST00000486741 MRPS30Q9NP92 439 aaKnown RBP12.79□□□□□ -0.36
HMGN1-216ENST00000486741 SOHLH2Q9NX45 425 aa12.79□□□□□ -0.36
HMGN1-216ENST00000486741 STOX2Q9P2F5 926 aaPredicted RBP12.79□□□□□ -0.36
HMGN1-216ENST00000486741 ZNF282Q9UDV7 671 aaPredicted RBP12.79□□□□□ -0.36
HMGN1-216ENST00000486741 DAPK2Q9UIK4 370 aa12.79□□□□□ -0.36
HMGN1-216ENST00000486741 IFNA16P05015 189 aa12.78□□□□□ -0.36
HMGN1-216ENST00000486741 EN2P19622 333 aaPredicted RBP12.78□□□□□ -0.36
HMGN1-216ENST00000486741 TRAF3Q13114 568 aa12.78□□□□□ -0.36
HMGN1-216ENST00000486741 TOP3AQ13472 1001 aaPredicted RBP12.78□□□□□ -0.36
HMGN1-216ENST00000486741 SYT16Q17RD7 645 aa12.78□□□□□ -0.36
HMGN1-216ENST00000486741 TCTN1Q2MV58 587 aa12.78□□□□□ -0.36
HMGN1-216ENST00000486741 IFI44LQ53G44 452 aa12.78□□□□□ -0.36
HMGN1-216ENST00000486741 SNAP47Q5SQN1 464 aa12.78□□□□□ -0.36
HMGN1-216ENST00000486741 FAM20CQ8IXL6 584 aa12.78□□□□□ -0.36
HMGN1-216ENST00000486741 KCT2Q8NC54 265 aa12.78□□□□□ -0.36
HMGN1-216ENST00000486741 RERGQ96A58 199 aaPredicted RBP12.78□□□□□ -0.36
HMGN1-216ENST00000486741 CEP44Q9C0F1 390 aa12.78□□□□□ -0.36
HMGN1-216ENST00000486741 ZBP1Q9H171 429 aa12.78□□□□□ -0.36
HMGN1-216ENST00000486741 C11orf16Q9NQ32 467 aa12.78□□□□□ -0.36
HMGN1-216ENST00000486741 TOR4AQ9NXH8 423 aa12.78□□□□□ -0.36
HMGN1-216ENST00000486741 IL37Q9NZH6 218 aa12.78□□□□□ -0.36
HMGN1-216ENST00000486741 SLC9A8Q9Y2E8 581 aa12.78□□□□□ -0.36
HMGN1-216ENST00000486741 A0A0J9YVX5 310 aa12.78□□□□□ -0.36
HMGN1-216ENST00000486741 PDPK1O15530 556 aa12.78□□□□□ -0.36
HMGN1-216ENST00000486741 BCHEP06276 602 aa12.78□□□□□ -0.36
HMGN1-216ENST00000486741 RPS3P23396 243 aaKnown RBP eCLIP12.78□□□□□ -0.361e-8■□□□□ 8.7
HMGN1-216ENST00000486741 PTGER1P34995 402 aa12.78□□□□□ -0.36
HMGN1-216ENST00000486741 KRT20P35900 424 aa12.78□□□□□ -0.36
HMGN1-216ENST00000486741 CENPAP49450 140 aa12.78□□□□□ -0.36
HMGN1-216ENST00000486741 EIF2B2P49770 351 aaKnown RBP12.78□□□□□ -0.36
HMGN1-216ENST00000486741 CCR8P51685 355 aa12.78□□□□□ -0.36
HMGN1-216ENST00000486741 PTPN5P54829 565 aa12.78□□□□□ -0.36
HMGN1-216ENST00000486741 FBXW4P57775 412 aa12.78□□□□□ -0.36
HMGN1-216ENST00000486741 RGS1Q08116 209 aa12.78□□□□□ -0.36
HMGN1-216ENST00000486741 SPIN4Q56A73 249 aa12.78□□□□□ -0.36
HMGN1-216ENST00000486741 PPP4R4Q6NUP7 873 aa12.78□□□□□ -0.36
HMGN1-216ENST00000486741 OR8H2Q8N162 312 aa12.78□□□□□ -0.36
HMGN1-216ENST00000486741 TERB1Q8NA31 727 aa12.78□□□□□ -0.36
HMGN1-216ENST00000486741 TMIGD2Q96BF3 282 aa12.78□□□□□ -0.36
HMGN1-216ENST00000486741 ZHX1-C8orf76Q96EF9 292 aa12.78□□□□□ -0.36
HMGN1-216ENST00000486741 RIMS3Q9UJD0 308 aa12.78□□□□□ -0.36
HMGN1-216ENST00000486741 TRIM43BA6NCK2 446 aa12.78□□□□□ -0.36
HMGN1-216ENST00000486741 OR10H2O60403 315 aa12.78□□□□□ -0.36
HMGN1-216ENST00000486741 AP2A2O94973 939 aa12.78□□□□□ -0.36
HMGN1-216ENST00000486741 CCNDBP1O95273 360 aa12.78□□□□□ -0.36
HMGN1-216ENST00000486741 ADRB3P13945 408 aa12.78□□□□□ -0.36
HMGN1-216ENST00000486741 CCR2P41597 374 aa12.78□□□□□ -0.36
HMGN1-216ENST00000486741 CLDN8P56748 225 aa12.78□□□□□ -0.36
HMGN1-216ENST00000486741 CEACAM20Q6UY09 585 aa12.78□□□□□ -0.36
HMGN1-216ENST00000486741 HACD2Q6Y1H2 254 aa12.78□□□□□ -0.36
HMGN1-216ENST00000486741 TAF8Q7Z7C8 310 aa12.78□□□□□ -0.36
HMGN1-216ENST00000486741 CBARPQ8N350 705 aaPredicted RBP12.78□□□□□ -0.36
HMGN1-216ENST00000486741 GALNT15Q8N3T1 639 aa12.78□□□□□ -0.36
HMGN1-216ENST00000486741 MARVELD2Q8N4S9 558 aa12.78□□□□□ -0.36
HMGN1-216ENST00000486741 OR5AR1Q8NGP9 310 aa12.78□□□□□ -0.36
HMGN1-216ENST00000486741 ADAMTS15Q8TE58 950 aa12.78□□□□□ -0.36
HMGN1-216ENST00000486741 FGF13Q92913 245 aa12.78□□□□□ -0.36
HMGN1-216ENST00000486741 TRIM43Q96BQ3 446 aaPredicted RBP12.78□□□□□ -0.36
HMGN1-216ENST00000486741 IL4I1Q96RQ9 567 aa12.78□□□□□ -0.36
HMGN1-216ENST00000486741 VN1R3Q9BXE9 311 aa12.78□□□□□ -0.36
HMGN1-216ENST00000486741 KCNH6Q9H252 994 aa12.78□□□□□ -0.36
HMGN1-216ENST00000486741 PTBP2Q9UKA9 531 aaKnown RBP12.78□□□□□ -0.36
HMGN1-216ENST00000486741 TMED5Q9Y3A6 229 aa12.78□□□□□ -0.36
HMGN1-216ENST00000486741 LSM1O15116 133 aaKnown RBP12.77□□□□□ -0.36
HMGN1-216ENST00000486741 NDUFS4O43181 175 aa12.77□□□□□ -0.36
HMGN1-216ENST00000486741 UGT2B11O75310 529 aa12.77□□□□□ -0.36
HMGN1-216ENST00000486741 HOXB2P14652 356 aa12.77□□□□□ -0.36
HMGN1-216ENST00000486741 FEN1P39748 380 aaKnown RBP12.77□□□□□ -0.36
HMGN1-216ENST00000486741 SOX9P48436 509 aa12.77□□□□□ -0.36
HMGN1-216ENST00000486741 ALDH3A2P51648 485 aa12.77□□□□□ -0.36
HMGN1-216ENST00000486741 C1DQ13901 141 aaKnown RBP12.77□□□□□ -0.36
HMGN1-216ENST00000486741 ZNF234Q14588 700 aa12.77□□□□□ -0.36
HMGN1-216ENST00000486741 PON2Q15165 354 aa12.77□□□□□ -0.36
HMGN1-216ENST00000486741 GALNT7Q86SF2 657 aa12.77□□□□□ -0.36
HMGN1-216ENST00000486741 NETO1Q8TDF5 533 aa12.77□□□□□ -0.36
HMGN1-216ENST00000486741 SORBS1Q9BX66 1292 aaKnown RBP12.77□□□□□ -0.36
HMGN1-216ENST00000486741 SRMSQ9H3Y6 488 aa12.77□□□□□ -0.36
HMGN1-216ENST00000486741 EPS8L2Q9H6S3 715 aa12.77□□□□□ -0.36
HMGN1-216ENST00000486741 RC3H2Q9HBD1 1191 aaKnown RBP12.77□□□□□ -0.36
HMGN1-216ENST00000486741 FBXL21Q9UKT6 434 aa12.77□□□□□ -0.36
HMGN1-216ENST00000486741 PCDHB3Q9Y5E6 796 aa12.77□□□□□ -0.36
HMGN1-216ENST00000486741 KLHL33A6NCF5 533 aa12.77□□□□□ -0.37
HMGN1-216ENST00000486741 RFXAPO00287 272 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms