RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 ATP6V0E1O15342 81 aa4.68□□□□□ -1.66
UPF3B-203ENST00000478840 ACSL4O60488 711 aa4.68□□□□□ -1.66
UPF3B-203ENST00000478840 NGFRP08138 427 aa4.68□□□□□ -1.66
UPF3B-203ENST00000478840 LIFP15018 202 aa4.68□□□□□ -1.66
UPF3B-203ENST00000478840 ACP1P24666 158 aa4.68□□□□□ -1.66
UPF3B-203ENST00000478840 RABIFP47224 123 aa4.68□□□□□ -1.66
UPF3B-203ENST00000478840 SMSP52788 366 aa4.68□□□□□ -1.66
UPF3B-203ENST00000478840 HERV-K104P61576 105 aa4.68□□□□□ -1.66
UPF3B-203ENST00000478840 ILF3Q12906 894 aaKnown RBP eCLIP4.68□□□□□ -1.66
UPF3B-203ENST00000478840 OPCMLQ14982 345 aa4.68□□□□□ -1.66
UPF3B-203ENST00000478840 GPR33Q49SQ1 333 aa4.68□□□□□ -1.66
UPF3B-203ENST00000478840 XKR6Q5GH73 641 aa4.68□□□□□ -1.66
UPF3B-203ENST00000478840 XKR3Q5GH77 459 aa4.68□□□□□ -1.66
UPF3B-203ENST00000478840 C20orf194Q5TEA3 1177 aa4.68□□□□□ -1.66
UPF3B-203ENST00000478840 C9orf57Q5W0N0 161 aa4.68□□□□□ -1.66
UPF3B-203ENST00000478840 AWAT2Q6E213 333 aa4.68□□□□□ -1.66
UPF3B-203ENST00000478840 CD164L2Q6UWJ8 174 aa4.68□□□□□ -1.66
UPF3B-203ENST00000478840 RBM23Q86U06 439 aaKnown RBP4.68□□□□□ -1.66
UPF3B-203ENST00000478840 ELMOD2Q8IZ81 293 aa4.68□□□□□ -1.66
UPF3B-203ENST00000478840 TDHQ8IZJ6 230 aa4.68□□□□□ -1.66
UPF3B-203ENST00000478840 BATF2Q8N1L9 274 aa4.68□□□□□ -1.66
UPF3B-203ENST00000478840 TMEM99Q8N816 258 aa4.68□□□□□ -1.66
UPF3B-203ENST00000478840 NEK11Q8NG66 645 aa4.68□□□□□ -1.66
UPF3B-203ENST00000478840 PRCCQ92733 491 aaPredicted RBP4.68□□□□□ -1.66
UPF3B-203ENST00000478840 GGHQ92820 318 aa4.68□□□□□ -1.66
UPF3B-203ENST00000478840 WBP2Q969T9 261 aa4.68□□□□□ -1.66
UPF3B-203ENST00000478840 FAM46BQ96A09 425 aa4.68□□□□□ -1.66
UPF3B-203ENST00000478840 MRPL38Q96DV4 380 aaKnown RBP4.68□□□□□ -1.66
UPF3B-203ENST00000478840 RBM41Q96IZ5 413 aaKnown RBP4.68□□□□□ -1.66
UPF3B-203ENST00000478840 SPATA13Q96N96 652 aa4.68□□□□□ -1.66
UPF3B-203ENST00000478840 TSGA13Q96PP4 275 aa4.68□□□□□ -1.66
UPF3B-203ENST00000478840 ALKBH7Q9BT30 221 aaPredicted RBP4.68□□□□□ -1.66
UPF3B-203ENST00000478840 KRT23Q9C075 422 aa4.68□□□□□ -1.66
UPF3B-203ENST00000478840 WWTR1Q9GZV5 400 aa4.68□□□□□ -1.66
UPF3B-203ENST00000478840 CARD9Q9H257 536 aa4.68□□□□□ -1.66
UPF3B-203ENST00000478840 C5orf66Q9H5L9 145 aa4.68□□□□□ -1.66
UPF3B-203ENST00000478840 FAM118AQ9NWS6 357 aa4.68□□□□□ -1.66
UPF3B-203ENST00000478840 FLRT3Q9NZU0 649 aa4.68□□□□□ -1.66
UPF3B-203ENST00000478840 KCNN3Q9UGI6 736 aa4.68□□□□□ -1.66
UPF3B-203ENST00000478840 MAN1B1Q9UKM7 699 aa4.68□□□□□ -1.66
UPF3B-203ENST00000478840 KCNJ14Q9UNX9 436 aa4.68□□□□□ -1.66
UPF3B-203ENST00000478840 IGLV9-49A0A0B4J1Y8 123 aa4.67□□□□□ -1.66
UPF3B-203ENST00000478840 TLR4O00206 839 aa4.67□□□□□ -1.66
UPF3B-203ENST00000478840 YES1P07947 543 aa4.67□□□□□ -1.66
UPF3B-203ENST00000478840 IGHV4-38-2P0DP08 117 aa4.67□□□□□ -1.66
UPF3B-203ENST00000478840 AREGP15514 252 aa4.67□□□□□ -1.66
UPF3B-203ENST00000478840 ALDH4A1P30038 563 aa4.67□□□□□ -1.66
UPF3B-203ENST00000478840 ART1P52961 327 aa4.67□□□□□ -1.66
UPF3B-203ENST00000478840 CLDN17P56750 224 aa4.67□□□□□ -1.66
UPF3B-203ENST00000478840 FKBP1BP68106 108 aa4.67□□□□□ -1.66
UPF3B-203ENST00000478840 SLC3A1Q07837 685 aa4.67□□□□□ -1.66
UPF3B-203ENST00000478840 C12orf60Q5U649 245 aa4.67□□□□□ -1.66
UPF3B-203ENST00000478840 NFE4Q86UQ8 179 aa4.67□□□□□ -1.66
UPF3B-203ENST00000478840 CROCCP3Q8IVE0 287 aa4.67□□□□□ -1.66
UPF3B-203ENST00000478840 KDM8Q8N371 416 aa4.67□□□□□ -1.66
UPF3B-203ENST00000478840 METTL27Q8N6F8 245 aaPredicted RBP4.67□□□□□ -1.66
UPF3B-203ENST00000478840 KLHDC1Q8N7A1 406 aa4.67□□□□□ -1.66
UPF3B-203ENST00000478840 SIDT2Q8NBJ9 832 aaKnown RBP4.67□□□□□ -1.66
UPF3B-203ENST00000478840 PIK3R3Q92569 461 aa4.67□□□□□ -1.66
UPF3B-203ENST00000478840 IGSF21Q96ID5 467 aa4.67□□□□□ -1.66
UPF3B-203ENST00000478840 NSL1Q96IY1 281 aa4.67□□□□□ -1.66
UPF3B-203ENST00000478840 C4orf45Q96LM5 186 aa4.67□□□□□ -1.66
UPF3B-203ENST00000478840 KCNK16Q96T55 309 aa4.67□□□□□ -1.66
UPF3B-203ENST00000478840 ZNF577Q9BSK1 485 aa4.67□□□□□ -1.66
UPF3B-203ENST00000478840 SHARPINQ9H0F6 387 aa4.67□□□□□ -1.66
UPF3B-203ENST00000478840 IL36AQ9UHA7 158 aa4.67□□□□□ -1.66
UPF3B-203ENST00000478840 DNPEPQ9ULA0 475 aa4.67□□□□□ -1.66
UPF3B-203ENST00000478840 TNFSF12-TNFSF13A0A0A6YY99 330 aa4.66□□□□□ -1.66
UPF3B-203ENST00000478840 PRAC2D3DTV9 90 aa4.66□□□□□ -1.66
UPF3B-203ENST00000478840 M0R296 226 aa4.66□□□□□ -1.66
UPF3B-203ENST00000478840 DFFBO76075 338 aa4.66□□□□□ -1.66
UPF3B-203ENST00000478840 REC8O95072 547 aa4.66□□□□□ -1.66
UPF3B-203ENST00000478840 TRIM16O95361 564 aa4.66□□□□□ -1.66
UPF3B-203ENST00000478840 CXCL10P02778 98 aa4.66□□□□□ -1.66
UPF3B-203ENST00000478840 FRMD6-AS1P0C7T7 363 aa4.66□□□□□ -1.66
UPF3B-203ENST00000478840 CCDC192P0DO97 292 aa4.66□□□□□ -1.66
UPF3B-203ENST00000478840 ETS1P14921 441 aa4.66□□□□□ -1.66
UPF3B-203ENST00000478840 GOT1P17174 413 aa4.66□□□□□ -1.66
UPF3B-203ENST00000478840 CYP3A5P20815 502 aa4.66□□□□□ -1.66
UPF3B-203ENST00000478840 SFNP31947 248 aa4.66□□□□□ -1.66
UPF3B-203ENST00000478840 HPDP32754 393 aaPredicted RBP4.66□□□□□ -1.66
UPF3B-203ENST00000478840 CETN2P41208 172 aa4.66□□□□□ -1.66
UPF3B-203ENST00000478840 FMO5P49326 533 aa4.66□□□□□ -1.66
UPF3B-203ENST00000478840 CLCN4P51793 760 aa4.66□□□□□ -1.66
UPF3B-203ENST00000478840 ABRQ12979 859 aa4.66□□□□□ -1.66
UPF3B-203ENST00000478840 LCP2Q13094 533 aa4.66□□□□□ -1.66
UPF3B-203ENST00000478840 PTPN14Q15678 1187 aa4.66□□□□□ -1.66
UPF3B-203ENST00000478840 INAQ16352 499 aa4.66□□□□□ -1.66
UPF3B-203ENST00000478840 ARMCX4Q5H9R4 360 aa4.66□□□□□ -1.66
UPF3B-203ENST00000478840 UGT3A1Q6NUS8 523 aa4.66□□□□□ -1.66
UPF3B-203ENST00000478840 DLEU7Q6UYE1 221 aa4.66□□□□□ -1.66
UPF3B-203ENST00000478840 RBM43Q6ZSC3 357 aaKnown RBP4.66□□□□□ -1.66
UPF3B-203ENST00000478840 FOXL2NBQ6ZUU3 175 aa4.66□□□□□ -1.66
UPF3B-203ENST00000478840 ADCK1Q86TW2 530 aa4.66□□□□□ -1.66
UPF3B-203ENST00000478840 DNAJC22Q8N4W6 341 aa4.66□□□□□ -1.66
UPF3B-203ENST00000478840 LMNTD1Q8N9Z9 388 aa4.66□□□□□ -1.66
UPF3B-203ENST00000478840 SECTM1Q8WVN6 248 aa4.66□□□□□ -1.66
UPF3B-203ENST00000478840 ST6GAL2Q96JF0 529 aa4.66□□□□□ -1.66
UPF3B-203ENST00000478840 NACAP1Q9BZK3 213 aa4.66□□□□□ -1.66
UPF3B-203ENST00000478840 NYXQ9GZU5 481 aa4.66□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms