RNA–Protein interactions for RNA: ENST00000474871.5

NPHP3-206, Transcript of nephrocystin 3, humanhuman

TSL 2

Gene NPHP3, Length 4,493 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-206ENST00000474871 CFHR4Q92496 578 aa4.72□□□□□ -1.65
NPHP3-206ENST00000474871 C12orf43Q96C57 262 aaKnown RBP4.72□□□□□ -1.65
NPHP3-206ENST00000474871 LINC00052Q96N35 136 aa4.72□□□□□ -1.65
NPHP3-206ENST00000474871 PRAP1Q96NZ9 151 aa4.72□□□□□ -1.65
NPHP3-206ENST00000474871 NAT9Q9BTE0 207 aa4.72□□□□□ -1.65
NPHP3-206ENST00000474871 MRI1Q9BV20 369 aa4.72□□□□□ -1.65
NPHP3-206ENST00000474871 UGT2B28Q9BY64 529 aa4.72□□□□□ -1.65
NPHP3-206ENST00000474871 CD244Q9BZW8 370 aa4.72□□□□□ -1.65
NPHP3-206ENST00000474871 EXO5Q9H790 373 aa4.72□□□□□ -1.65
NPHP3-206ENST00000474871 CERS4Q9HA82 394 aa4.72□□□□□ -1.65
NPHP3-206ENST00000474871 SLC22A11Q9NSA0 550 aa4.72□□□□□ -1.65
NPHP3-206ENST00000474871 PRMT7Q9NVM4 692 aaPredicted RBP4.72□□□□□ -1.65
NPHP3-206ENST00000474871 KCNG2Q9UJ96 466 aa4.72□□□□□ -1.65
NPHP3-206ENST00000474871 OGDHLQ9ULD0 1010 aa4.72□□□□□ -1.65
NPHP3-206ENST00000474871 KCNJ14Q9UNX9 436 aa4.72□□□□□ -1.65
NPHP3-206ENST00000474871 FER1L6Q2WGJ9 1857 aa4.72□□□□□ -1.65
NPHP3-206ENST00000474871 PLIN4Q96Q06 1357 aa4.72□□□□□ -1.65
NPHP3-206ENST00000474871 MTCL1Q9Y4B5 1905 aaKnown RBP4.72□□□□□ -1.65
NPHP3-206ENST00000474871 A0A087WWV3 80 aa4.72□□□□□ -1.65
NPHP3-206ENST00000474871 H3BNC9 293 aa4.72□□□□□ -1.65
NPHP3-206ENST00000474871 GTPBP1O00178 669 aaKnown RBP4.72□□□□□ -1.65
NPHP3-206ENST00000474871 TFECO14948 347 aaPredicted RBP4.72□□□□□ -1.65
NPHP3-206ENST00000474871 DNAJA2O60884 412 aa4.72□□□□□ -1.65
NPHP3-206ENST00000474871 PPP6R2O75170 966 aa4.72□□□□□ -1.65
NPHP3-206ENST00000474871 ESRRBO95718 433 aa4.72□□□□□ -1.65
NPHP3-206ENST00000474871 NDST3O95803 873 aa4.72□□□□□ -1.65
NPHP3-206ENST00000474871 SLC2A1P11166 492 aa4.72□□□□□ -1.65
NPHP3-206ENST00000474871 CCL2P13500 99 aa4.72□□□□□ -1.65
NPHP3-206ENST00000474871 PIK3CGP48736 1102 aa4.72□□□□□ -1.65
NPHP3-206ENST00000474871 AQP4P55087 323 aa4.72□□□□□ -1.65
NPHP3-206ENST00000474871 DLG4P78352 724 aa4.72□□□□□ -1.65
NPHP3-206ENST00000474871 ZNF45Q02386 682 aa4.72□□□□□ -1.65
NPHP3-206ENST00000474871 UAP1L1Q3KQV9 507 aa4.72□□□□□ -1.65
NPHP3-206ENST00000474871 PRR16Q569H4 304 aa4.72□□□□□ -1.65
NPHP3-206ENST00000474871 PAN3Q58A45 887 aaKnown RBP4.72□□□□□ -1.65
NPHP3-206ENST00000474871 TSSK4Q6SA08 328 aa4.72□□□□□ -1.65
NPHP3-206ENST00000474871 C6orf15Q6UXA7 325 aaPredicted RBP4.72□□□□□ -1.65
NPHP3-206ENST00000474871 GK5Q6ZS86 529 aa4.72□□□□□ -1.65
NPHP3-206ENST00000474871 ZBTB49Q6ZSB9 765 aa4.72□□□□□ -1.65
NPHP3-206ENST00000474871 RRAGAQ7L523 313 aa4.72□□□□□ -1.65
NPHP3-206ENST00000474871 TRABD2AQ86V40 505 aa4.72□□□□□ -1.65
NPHP3-206ENST00000474871 SERINC5Q86VE9 423 aa4.72□□□□□ -1.65
NPHP3-206ENST00000474871 SYNPOQ8N3V7 929 aa4.72□□□□□ -1.65
NPHP3-206ENST00000474871 RTL3Q8N8U3 475 aaKnown RBP4.72□□□□□ -1.65
NPHP3-206ENST00000474871 OR2L5Q8NG80 312 aa4.72□□□□□ -1.65
NPHP3-206ENST00000474871 ING5Q8WYH8 240 aa4.72□□□□□ -1.65
NPHP3-206ENST00000474871 MEGF10Q96KG7 1140 aa4.72□□□□□ -1.65
NPHP3-206ENST00000474871 LRFN5Q96NI6 719 aa4.72□□□□□ -1.65
NPHP3-206ENST00000474871 SLC12A9Q9BXP2 914 aa4.72□□□□□ -1.65
NPHP3-206ENST00000474871 BRF2Q9HAW0 419 aa4.72□□□□□ -1.65
NPHP3-206ENST00000474871 RBM12Q9NTZ6 932 aaKnown RBP4.72□□□□□ -1.65
NPHP3-206ENST00000474871 MAB21L2Q9Y586 359 aa4.72□□□□□ -1.65
NPHP3-206ENST00000474871 SCN9AQ15858 1988 aa4.71□□□□□ -1.65
NPHP3-206ENST00000474871 DENND3A2RUS2 1198 aa4.71□□□□□ -1.66
NPHP3-206ENST00000474871 BTBD17A6NE02 478 aa4.71□□□□□ -1.66
NPHP3-206ENST00000474871 KPNA4O00629 521 aaPredicted RBP4.71□□□□□ -1.66
NPHP3-206ENST00000474871 COPEO14579 308 aa4.71□□□□□ -1.66
NPHP3-206ENST00000474871 PRKD3O94806 890 aa4.71□□□□□ -1.66
NPHP3-206ENST00000474871 ZWINTO95229 277 aa4.71□□□□□ -1.66
NPHP3-206ENST00000474871 NTRK1P04629 796 aa4.71□□□□□ -1.66
NPHP3-206ENST00000474871 NCF1P14598 390 aaPredicted RBP4.71□□□□□ -1.66
NPHP3-206ENST00000474871 FEN1P39748 380 aaKnown RBP4.71□□□□□ -1.66
NPHP3-206ENST00000474871 LIMS1P48059 325 aa4.71□□□□□ -1.66
NPHP3-206ENST00000474871 CDK8P49336 464 aa4.71□□□□□ -1.66
NPHP3-206ENST00000474871 JAK3P52333 1124 aa4.71□□□□□ -1.66
NPHP3-206ENST00000474871 NUDT6P53370 316 aa4.71□□□□□ -1.66
NPHP3-206ENST00000474871 FKBP1AP62942 108 aaKnown RBP4.71□□□□□ -1.66
NPHP3-206ENST00000474871 ECH1Q13011 328 aa4.71□□□□□ -1.66
NPHP3-206ENST00000474871 SHBQ15464 509 aa4.71□□□□□ -1.66
NPHP3-206ENST00000474871 PGS1Q32NB8 556 aa4.71□□□□□ -1.66
NPHP3-206ENST00000474871 PIP5KL1Q5T9C9 394 aa4.71□□□□□ -1.66
NPHP3-206ENST00000474871 ETFRF1Q6IPR1 90 aa4.71□□□□□ -1.66
NPHP3-206ENST00000474871 PDZD3Q86UT5 571 aa4.71□□□□□ -1.66
NPHP3-206ENST00000474871 SLC35F6Q8N357 371 aa4.71□□□□□ -1.66
NPHP3-206ENST00000474871 CHST14Q8NCH0 376 aa4.71□□□□□ -1.66
NPHP3-206ENST00000474871 STXBP6Q8NFX7 210 aa4.71□□□□□ -1.66
NPHP3-206ENST00000474871 SHKBP1Q8TBC3 707 aa4.71□□□□□ -1.66
NPHP3-206ENST00000474871 U2AF1L4Q8WU68 220 aaKnown RBP4.71□□□□□ -1.66
NPHP3-206ENST00000474871 SFT2D1Q8WV19 159 aa4.71□□□□□ -1.66
NPHP3-206ENST00000474871 SLC39A7Q92504 469 aa4.71□□□□□ -1.66
NPHP3-206ENST00000474871 PHYHIPQ92561 330 aa4.71□□□□□ -1.66
NPHP3-206ENST00000474871 PHF21BQ96EK2 531 aa4.71□□□□□ -1.66
NPHP3-206ENST00000474871 ACO2Q99798 780 aaKnown RBP4.71□□□□□ -1.66
NPHP3-206ENST00000474871 SEMA3CQ99985 751 aa4.71□□□□□ -1.66
NPHP3-206ENST00000474871 HAPLN2Q9GZV7 340 aa4.71□□□□□ -1.66
NPHP3-206ENST00000474871 DDX31Q9H8H2 851 aaKnown RBP4.71□□□□□ -1.66
NPHP3-206ENST00000474871 IMP3Q9NV31 184 aaKnown RBP4.71□□□□□ -1.66
NPHP3-206ENST00000474871 USP15Q9Y4E8 981 aaPredicted RBP4.71□□□□□ -1.66
NPHP3-206ENST00000474871 SOWAHBA6NEL2 793 aa4.71□□□□□ -1.66
NPHP3-206ENST00000474871 WASHC1A8K0Z3 465 aa4.71□□□□□ -1.66
NPHP3-206ENST00000474871 WASH3PC4AMC7 463 aa4.71□□□□□ -1.66
NPHP3-206ENST00000474871 HMGB3O15347 200 aaKnown RBP4.71□□□□□ -1.66
NPHP3-206ENST00000474871 DLEU1O43261 78 aa4.71□□□□□ -1.66
NPHP3-206ENST00000474871 IFNA4P05014 189 aa4.71□□□□□ -1.66
NPHP3-206ENST00000474871 SPATA31C1P0DKV0 1188 aa4.71□□□□□ -1.66
NPHP3-206ENST00000474871 SNHG28P0DPA3 235 aa4.71□□□□□ -1.66
NPHP3-206ENST00000474871 PEPDP12955 493 aa4.71□□□□□ -1.66
NPHP3-206ENST00000474871 AMPD1P23109 780 aa4.71□□□□□ -1.66
NPHP3-206ENST00000474871 CEACAM8P31997 349 aaPredicted RBP4.71□□□□□ -1.66
NPHP3-206ENST00000474871 MAGEB1P43366 347 aa4.71□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms