RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 ENAMQ9NRM1 1142 aa12.96□□□□□ -0.34
COL6A3-209ENST00000472056 FAM105AQ9NUU6 356 aa12.96□□□□□ -0.34
COL6A3-209ENST00000472056 hCG_2039718K7EN88 272 aa12.95□□□□□ -0.34
COL6A3-209ENST00000472056 CYP2B6P20813 491 aa12.95□□□□□ -0.34
COL6A3-209ENST00000472056 EMX2Q04743 252 aa12.95□□□□□ -0.34
COL6A3-209ENST00000472056 PPP1R26Q5T8A7 1209 aaPredicted RBP12.95□□□□□ -0.34
COL6A3-209ENST00000472056 TRIM43Q96BQ3 446 aaPredicted RBP12.95□□□□□ -0.34
COL6A3-209ENST00000472056 WACQ9BTA9 647 aa12.95□□□□□ -0.34
COL6A3-209ENST00000472056 OR10A4Q9H209 315 aa12.95□□□□□ -0.34
COL6A3-209ENST00000472056 TMEM59LQ9UK28 342 aa12.95□□□□□ -0.34
COL6A3-209ENST00000472056 PCYT1BQ9Y5K3 369 aaPredicted RBP12.95□□□□□ -0.34
COL6A3-209ENST00000472056 SMIM35A0A1B0GVV1 85 aa12.95□□□□□ -0.34
COL6A3-209ENST00000472056 PHYHO14832 338 aa12.95□□□□□ -0.34
COL6A3-209ENST00000472056 SYN3O14994 580 aa12.95□□□□□ -0.34
COL6A3-209ENST00000472056 DBIP07108 87 aaKnown RBP12.95□□□□□ -0.34
COL6A3-209ENST00000472056 PTCHD3Q3KNS1 767 aa12.95□□□□□ -0.34
COL6A3-209ENST00000472056 NOL9Q5SY16 702 aaKnown RBP12.95□□□□□ -0.34
COL6A3-209ENST00000472056 ATG9BQ674R7 924 aa12.95□□□□□ -0.34
COL6A3-209ENST00000472056 CDC6Q99741 560 aa12.95□□□□□ -0.34
COL6A3-209ENST00000472056 EQTNQ9NQ60 294 aa12.95□□□□□ -0.34
COL6A3-209ENST00000472056 FAIMQ9NVQ4 179 aa12.95□□□□□ -0.34
COL6A3-209ENST00000472056 QPCTLQ9NXS2 382 aa12.95□□□□□ -0.34
COL6A3-209ENST00000472056 CNTN5O94779 1100 aa12.95□□□□□ -0.34
COL6A3-209ENST00000472056 IL1BP01584 269 aa12.95□□□□□ -0.34
COL6A3-209ENST00000472056 AKT2P31751 481 aa12.95□□□□□ -0.34
COL6A3-209ENST00000472056 PRMT2P55345 433 aa12.95□□□□□ -0.34
COL6A3-209ENST00000472056 CHIT1Q13231 466 aa12.95□□□□□ -0.34
COL6A3-209ENST00000472056 CD300LFQ8TDQ1 290 aa12.95□□□□□ -0.34
COL6A3-209ENST00000472056 PPP1R13LQ8WUF5 828 aa12.95□□□□□ -0.34
COL6A3-209ENST00000472056 JPH3Q8WXH2 748 aaPredicted RBP12.95□□□□□ -0.34
COL6A3-209ENST00000472056 UCK2Q9BZX2 261 aa12.95□□□□□ -0.34
COL6A3-209ENST00000472056 VSTM5A8MXK1 200 aa12.95□□□□□ -0.34
COL6A3-209ENST00000472056 TOR1BO14657 336 aa12.95□□□□□ -0.34
COL6A3-209ENST00000472056 MT-CO2P00403 227 aa12.95□□□□□ -0.34
COL6A3-209ENST00000472056 CHRNA1P02708 482 aa12.95□□□□□ -0.34
COL6A3-209ENST00000472056 METTL11BQ5VVY1 283 aa12.95□□□□□ -0.34
COL6A3-209ENST00000472056 RAP1GAP2Q684P5 730 aa12.95□□□□□ -0.34
COL6A3-209ENST00000472056 MSANTD2Q6P1R3 559 aa12.95□□□□□ -0.34
COL6A3-209ENST00000472056 SMARCD3Q6STE5 483 aa12.95□□□□□ -0.34
COL6A3-209ENST00000472056 IFNLR1Q8IU57 520 aaPredicted RBP12.95□□□□□ -0.34
COL6A3-209ENST00000472056 GALNT13Q8IUC8 556 aa12.95□□□□□ -0.34
COL6A3-209ENST00000472056 BEST4Q8NFU0 473 aa12.95□□□□□ -0.34
COL6A3-209ENST00000472056 IL4I1Q96RQ9 567 aa12.95□□□□□ -0.34
COL6A3-209ENST00000472056 RAB9BQ9NP90 201 aa12.95□□□□□ -0.34
COL6A3-209ENST00000472056 ZDHHC18Q9NUE0 388 aa12.95□□□□□ -0.34
COL6A3-209ENST00000472056 UBIAD1Q9Y5Z9 338 aa12.95□□□□□ -0.34
COL6A3-209ENST00000472056 CIB4A0PJX0 185 aa12.95□□□□□ -0.34
COL6A3-209ENST00000472056 RHPN2P1A8MT19 583 aa12.95□□□□□ -0.34
COL6A3-209ENST00000472056 SH3BGRLO75368 114 aa12.95□□□□□ -0.34
COL6A3-209ENST00000472056 HTR1AP08908 422 aa12.95□□□□□ -0.34
COL6A3-209ENST00000472056 ZSCAN1Q8NBB4 408 aa12.95□□□□□ -0.34
COL6A3-209ENST00000472056 LIN37Q96GY3 246 aaPredicted RBP12.95□□□□□ -0.34
COL6A3-209ENST00000472056 SCN4AP35499 1836 aa12.95□□□□□ -0.34
COL6A3-209ENST00000472056 TRIM64BA6NI03 449 aa12.95□□□□□ -0.34
COL6A3-209ENST00000472056 ELOA3DA6NLF2 546 aaPredicted RBP12.95□□□□□ -0.34
COL6A3-209ENST00000472056 DHCR24Q15392 516 aa12.95□□□□□ -0.34
COL6A3-209ENST00000472056 ELOA3BQ3SY89 546 aa12.95□□□□□ -0.34
COL6A3-209ENST00000472056 PIAS4Q8N2W9 510 aaPredicted RBP12.95□□□□□ -0.34
COL6A3-209ENST00000472056 ELOA3Q8NG57 546 aa12.95□□□□□ -0.34
COL6A3-209ENST00000472056 CANT1Q8WVQ1 401 aa12.95□□□□□ -0.34
COL6A3-209ENST00000472056 SLC32A1Q9H598 525 aa12.95□□□□□ -0.34
COL6A3-209ENST00000472056 SDHAF3Q9NRP4 125 aa12.95□□□□□ -0.34
COL6A3-209ENST00000472056 ENPP2Q13822 863 aa12.95□□□□□ -0.34
COL6A3-209ENST00000472056 PROKR2Q8NFJ6 384 aa12.95□□□□□ -0.34
COL6A3-209ENST00000472056 SULT4A1Q9BR01 284 aa12.95□□□□□ -0.34
COL6A3-209ENST00000472056 GPSM3Q9Y4H4 160 aa12.95□□□□□ -0.34
COL6A3-209ENST00000472056 TEX264Q9Y6I9 313 aa12.95□□□□□ -0.34
COL6A3-209ENST00000472056 LCHNA4D1U4 455 aa12.94□□□□□ -0.34
COL6A3-209ENST00000472056 CAPN5O15484 640 aaPredicted RBP12.94□□□□□ -0.34
COL6A3-209ENST00000472056 SLC16A8O95907 504 aa12.94□□□□□ -0.34
COL6A3-209ENST00000472056 C1RP00736 705 aa12.94□□□□□ -0.34
COL6A3-209ENST00000472056 XRCC1P18887 633 aaPredicted RBP12.94□□□□□ -0.34
COL6A3-209ENST00000472056 DNASE1L3Q13609 305 aa12.94□□□□□ -0.34
COL6A3-209ENST00000472056 DSC3Q14574 896 aa12.94□□□□□ -0.34
COL6A3-209ENST00000472056 UGT2A3Q6UWM9 527 aa12.94□□□□□ -0.34
COL6A3-209ENST00000472056 ZNF584Q8IVC4 421 aa12.94□□□□□ -0.34
COL6A3-209ENST00000472056 SLC7A13Q8TCU3 470 aa12.94□□□□□ -0.34
COL6A3-209ENST00000472056 ZBED3Q96IU2 234 aaPredicted RBP12.94□□□□□ -0.34
COL6A3-209ENST00000472056 SLC15A5A6NIM6 579 aa12.94□□□□□ -0.34
COL6A3-209ENST00000472056 FAM159BA6NKW6 160 aa12.94□□□□□ -0.34
COL6A3-209ENST00000472056 H3BSA7 217 aa12.94□□□□□ -0.34
COL6A3-209ENST00000472056 RBBP9O75884 186 aa12.94□□□□□ -0.34
COL6A3-209ENST00000472056 LGALS2P05162 132 aa12.94□□□□□ -0.34
COL6A3-209ENST00000472056 MYF6P23409 242 aa12.94□□□□□ -0.34
COL6A3-209ENST00000472056 UNQ6126/PRO20091Q6UXV3 157 aa12.94□□□□□ -0.34
COL6A3-209ENST00000472056 SSX6Q7RTT6 188 aa12.94□□□□□ -0.34
COL6A3-209ENST00000472056 ZNF283Q8N7M2 679 aa12.94□□□□□ -0.34
COL6A3-209ENST00000472056 FAM86B1Q8N7N1 296 aa12.94□□□□□ -0.34
COL6A3-209ENST00000472056 AQP11Q8NBQ7 271 aa12.94□□□□□ -0.34
COL6A3-209ENST00000472056 TREX2Q9BQ50 279 aaPredicted RBP12.94□□□□□ -0.34
COL6A3-209ENST00000472056 TSPAN8P19075 237 aa12.94□□□□□ -0.34
COL6A3-209ENST00000472056 FRG2Q64ET8 278 aa12.94□□□□□ -0.34
COL6A3-209ENST00000472056 OR5T2Q8NGG2 359 aa12.94□□□□□ -0.34
COL6A3-209ENST00000472056 MALSU1Q96EH3 234 aa12.94□□□□□ -0.34
COL6A3-209ENST00000472056 FRG2BQ96QU4 278 aa12.94□□□□□ -0.34
COL6A3-209ENST00000472056 GON7Q9BXV9 100 aa12.94□□□□□ -0.34
COL6A3-209ENST00000472056 BRINP2Q9C0B6 783 aa12.94□□□□□ -0.34
COL6A3-209ENST00000472056 TMPRSS4Q9NRS4 437 aa12.94□□□□□ -0.34
COL6A3-209ENST00000472056 TVP23BQ9NYZ1 205 aa12.94□□□□□ -0.34
COL6A3-209ENST00000472056 NME7Q9Y5B8 376 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms