RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 ATP1B2P14415 290 aaPredicted RBP4.98□□□□□ -1.61
PTPN4-209ENST00000469511 FSTP19883 344 aa4.98□□□□□ -1.61
PTPN4-209ENST00000469511 DNASE1P24855 282 aa4.98□□□□□ -1.61
PTPN4-209ENST00000469511 PTPN3P26045 913 aa4.98□□□□□ -1.61
PTPN4-209ENST00000469511 EEF1GP26641 437 aaKnown RBP4.98□□□□□ -1.61
PTPN4-209ENST00000469511 PSMB5P28074 263 aa4.98□□□□□ -1.61
PTPN4-209ENST00000469511 RAB28P51157 221 aa4.98□□□□□ -1.61
PTPN4-209ENST00000469511 DGKQP52824 942 aa4.98□□□□□ -1.61
PTPN4-209ENST00000469511 ARSFP54793 590 aa4.98□□□□□ -1.61
PTPN4-209ENST00000469511 CSE1LP55060 971 aaKnown RBP4.98□□□□□ -1.61
PTPN4-209ENST00000469511 MAT1AQ00266 395 aaKnown RBP4.98□□□□□ -1.61
PTPN4-209ENST00000469511 PMPCAQ10713 525 aa4.98□□□□□ -1.61
PTPN4-209ENST00000469511 WASHC5Q12768 1159 aa4.98□□□□□ -1.61
PTPN4-209ENST00000469511 MSLNQ13421 630 aaPredicted RBP4.98□□□□□ -1.61
PTPN4-209ENST00000469511 DOC2BQ14184 412 aa4.98□□□□□ -1.61
PTPN4-209ENST00000469511 GRB7Q14451 532 aa4.98□□□□□ -1.61
PTPN4-209ENST00000469511 TCEAL1Q15170 157 aa4.98□□□□□ -1.61
PTPN4-209ENST00000469511 OR1C1Q15619 314 aa4.98□□□□□ -1.61
PTPN4-209ENST00000469511 SLC1A5Q15758 541 aa4.98□□□□□ -1.61
PTPN4-209ENST00000469511 FIGLAQ6QHK4 219 aa4.98□□□□□ -1.61
PTPN4-209ENST00000469511 SPATC1Q76KD6 591 aa4.98□□□□□ -1.61
PTPN4-209ENST00000469511 APTXQ7Z2E3 356 aaKnown RBP4.98□□□□□ -1.61
PTPN4-209ENST00000469511 GLT6D1Q7Z4J2 308 aa4.98□□□□□ -1.61
PTPN4-209ENST00000469511 CRLF3Q8IUI8 442 aa4.98□□□□□ -1.61
PTPN4-209ENST00000469511 GHDCQ8N2G8 530 aa4.98□□□□□ -1.61
PTPN4-209ENST00000469511 LILRB2Q8N423 598 aa4.98□□□□□ -1.61
PTPN4-209ENST00000469511 AMER3Q8N944 861 aa4.98□□□□□ -1.61
PTPN4-209ENST00000469511 KCTD6Q8NC69 237 aa4.98□□□□□ -1.61
PTPN4-209ENST00000469511 ANKRD20A12PQ8NF67 263 aa4.98□□□□□ -1.61
PTPN4-209ENST00000469511 OR4K2Q8NGD2 314 aa4.98□□□□□ -1.61
PTPN4-209ENST00000469511 SUN3Q8TAQ9 357 aa4.98□□□□□ -1.61
PTPN4-209ENST00000469511 DTX3LQ8TDB6 740 aa4.98□□□□□ -1.61
PTPN4-209ENST00000469511 DLG3Q92796 817 aa4.98□□□□□ -1.61
PTPN4-209ENST00000469511 TMEM125Q96AQ2 219 aa4.98□□□□□ -1.61
PTPN4-209ENST00000469511 RCC1LQ96I51 464 aaKnown RBP4.98□□□□□ -1.61
PTPN4-209ENST00000469511 Q96M66 194 aa4.98□□□□□ -1.61
PTPN4-209ENST00000469511 RNF157Q96PX1 679 aa4.98□□□□□ -1.61
PTPN4-209ENST00000469511 ALPK1Q96QP1 1244 aa4.98□□□□□ -1.61
PTPN4-209ENST00000469511 APOL2Q9BQE5 337 aa4.98□□□□□ -1.61
PTPN4-209ENST00000469511 GORASP1Q9BQQ3 440 aa4.98□□□□□ -1.61
PTPN4-209ENST00000469511 XPO4Q9C0E2 1151 aaKnown RBP4.98□□□□□ -1.61
PTPN4-209ENST00000469511 ZNF700Q9H0M5 742 aa4.98□□□□□ -1.61
PTPN4-209ENST00000469511 THAP2Q9H0W7 228 aa4.98□□□□□ -1.61
PTPN4-209ENST00000469511 C10orf88Q9H8K7 445 aa4.98□□□□□ -1.61
PTPN4-209ENST00000469511 GP6Q9HCN6 339 aa4.98□□□□□ -1.61
PTPN4-209ENST00000469511 KCNJ16Q9NPI9 418 aa4.98□□□□□ -1.61
PTPN4-209ENST00000469511 DMRT3Q9NQL9 472 aa4.98□□□□□ -1.61
PTPN4-209ENST00000469511 RASSF1Q9NS23 344 aa4.98□□□□□ -1.61
PTPN4-209ENST00000469511 FANCLQ9NW38 375 aa4.98□□□□□ -1.61
PTPN4-209ENST00000469511 COQ3Q9NZJ6 369 aa4.98□□□□□ -1.61
PTPN4-209ENST00000469511 WHRNQ9P202 907 aa4.98□□□□□ -1.61
PTPN4-209ENST00000469511 SAE1Q9UBE0 346 aaPredicted RBP4.98□□□□□ -1.61
PTPN4-209ENST00000469511 ZNF282Q9UDV7 671 aaPredicted RBP4.98□□□□□ -1.61
PTPN4-209ENST00000469511 ZC3H7BQ9UGR2 993 aaKnown RBP4.98□□□□□ -1.61
PTPN4-209ENST00000469511 CAPN6Q9Y6Q1 641 aa4.98□□□□□ -1.61
PTPN4-209ENST00000469511 NINQ8N4C6 2090 aa4.98□□□□□ -1.61
PTPN4-209ENST00000469511 CUBNO60494 3623 aa4.98□□□□□ -1.61
PTPN4-209ENST00000469511 DSCAMO60469 2012 aa4.97□□□□□ -1.61
PTPN4-209ENST00000469511 MED12Q93074 2177 aa4.97□□□□□ -1.61
PTPN4-209ENST00000469511 LOC102723996A0A087X1L8 192 aa4.97□□□□□ -1.61
PTPN4-209ENST00000469511 A0A0A6YYK5 440 aaPredicted RBP4.97□□□□□ -1.61
PTPN4-209ENST00000469511 A0A0U1RQJ8 604 aa4.97□□□□□ -1.61
PTPN4-209ENST00000469511 FITM1A5D6W6 292 aa4.97□□□□□ -1.61
PTPN4-209ENST00000469511 C3orf70A6NLC5 250 aaPredicted RBP4.97□□□□□ -1.61
PTPN4-209ENST00000469511 FOXO6A8MYZ6 492 aa4.97□□□□□ -1.61
PTPN4-209ENST00000469511 IFRD1O00458 451 aaPredicted RBP4.97□□□□□ -1.61
PTPN4-209ENST00000469511 PRRG2O14669 202 aa4.97□□□□□ -1.61
PTPN4-209ENST00000469511 MSTNO14793 375 aa4.97□□□□□ -1.61
PTPN4-209ENST00000469511 STX7O15400 261 aaKnown RBP4.97□□□□□ -1.61
PTPN4-209ENST00000469511 FOXS1O43638 330 aa4.97□□□□□ -1.61
PTPN4-209ENST00000469511 HS6ST1O60243 411 aa4.97□□□□□ -1.61
PTPN4-209ENST00000469511 TSPAN12O95859 305 aa4.97□□□□□ -1.61
PTPN4-209ENST00000469511 STATHP02808 62 aa4.97□□□□□ -1.61
PTPN4-209ENST00000469511 EIF2S1P05198 315 aaKnown RBP4.97□□□□□ -1.61
PTPN4-209ENST00000469511 SP1P08047 785 aa4.97□□□□□ -1.61
PTPN4-209ENST00000469511 PIM1P11309 404 aaPredicted RBP4.97□□□□□ -1.61
PTPN4-209ENST00000469511 GZMAP12544 262 aa4.97□□□□□ -1.61
PTPN4-209ENST00000469511 FERP16591 822 aa4.97□□□□□ -1.61
PTPN4-209ENST00000469511 CDK11BP21127 795 aaKnown RBP4.97□□□□□ -1.61
PTPN4-209ENST00000469511 KDELR1P24390 212 aa4.97□□□□□ -1.61
PTPN4-209ENST00000469511 EEF1DP29692 281 aaKnown RBP4.97□□□□□ -1.61
PTPN4-209ENST00000469511 CHRNB4P30926 498 aa4.97□□□□□ -1.61
PTPN4-209ENST00000469511 SHMT2P34897 504 aa4.97□□□□□ -1.61
PTPN4-209ENST00000469511 PTGS2P35354 604 aa4.97□□□□□ -1.61
PTPN4-209ENST00000469511 CD151P48509 253 aa4.97□□□□□ -1.61
PTPN4-209ENST00000469511 UBXN1Q04323 297 aa4.97□□□□□ -1.61
PTPN4-209ENST00000469511 OCA2Q04671 838 aa4.97□□□□□ -1.61
PTPN4-209ENST00000469511 ITGA9Q13797 1035 aa4.97□□□□□ -1.61
PTPN4-209ENST00000469511 PIGHQ14442 188 aaPredicted RBP4.97□□□□□ -1.61
PTPN4-209ENST00000469511 GRM7Q14831 915 aa4.97□□□□□ -1.61
PTPN4-209ENST00000469511 MAPKAPK3Q16644 382 aa4.97□□□□□ -1.61
PTPN4-209ENST00000469511 DEFB113Q30KQ7 82 aa4.97□□□□□ -1.61
PTPN4-209ENST00000469511 CCSMST1Q4G0I0 132 aa4.97□□□□□ -1.61
PTPN4-209ENST00000469511 TEX44Q53QW1 395 aa4.97□□□□□ -1.61
PTPN4-209ENST00000469511 ACER2Q5QJU3 275 aa4.97□□□□□ -1.61
PTPN4-209ENST00000469511 H3F3CQ6NXT2 135 aa4.97□□□□□ -1.61
PTPN4-209ENST00000469511 FBXO42Q6P3S6 717 aa4.97□□□□□ -1.61
PTPN4-209ENST00000469511 TMEM205Q6UW68 189 aa4.97□□□□□ -1.61
PTPN4-209ENST00000469511 VRK3Q8IV63 474 aa4.97□□□□□ -1.61
PTPN4-209ENST00000469511 ZC3H7AQ8IWR0 971 aaKnown RBP4.97□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms