RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 HIST1H2AJQ99878 128 aa11.4□□□□□ -0.58
SQSTM1-206ENST00000466342 CCDC77Q9BR77 488 aa11.4□□□□□ -0.58
SQSTM1-206ENST00000466342 H2AFJQ9BTM1 129 aa11.4□□□□□ -0.58
SQSTM1-206ENST00000466342 PPCSQ9HAB8 311 aa11.4□□□□□ -0.58
SQSTM1-206ENST00000466342 SNX15Q9NRS6 342 aa11.4□□□□□ -0.58
SQSTM1-206ENST00000466342 SERTAD3Q9UJW9 196 aa11.4□□□□□ -0.58
SQSTM1-206ENST00000466342 NOVA2Q9UNW9 492 aaKnown RBP11.4□□□□□ -0.58
SQSTM1-206ENST00000466342 NTNG1Q9Y2I2 539 aa11.4□□□□□ -0.58
SQSTM1-206ENST00000466342 SPG11Q96JI7 2443 aa11.39□□□□□ -0.59
SQSTM1-206ENST00000466342 A0A087X1B8 175 aa11.39□□□□□ -0.59
SQSTM1-206ENST00000466342 A0A096LPK6 155 aa11.39□□□□□ -0.59
SQSTM1-206ENST00000466342 A0A0J9YY10 115 aa11.39□□□□□ -0.59
SQSTM1-206ENST00000466342 A0A1B0GUH1 482 aa11.39□□□□□ -0.59
SQSTM1-206ENST00000466342 PRICKLE3O43900 615 aaPredicted RBP11.39□□□□□ -0.59
SQSTM1-206ENST00000466342 SHBGP04278 402 aa11.39□□□□□ -0.59
SQSTM1-206ENST00000466342 C2P06681 752 aa11.39□□□□□ -0.59
SQSTM1-206ENST00000466342 CD1DP15813 335 aa11.39□□□□□ -0.59
SQSTM1-206ENST00000466342 IMPA1P29218 277 aa11.39□□□□□ -0.59
SQSTM1-206ENST00000466342 TYK2P29597 1187 aa11.39□□□□□ -0.59
SQSTM1-206ENST00000466342 SLC26A3P40879 764 aa11.39□□□□□ -0.59
SQSTM1-206ENST00000466342 MAGEA12P43365 314 aa11.39□□□□□ -0.59
SQSTM1-206ENST00000466342 AP1S2P56377 157 aa11.39□□□□□ -0.59
SQSTM1-206ENST00000466342 ATP6V0D1P61421 351 aa11.39□□□□□ -0.59
SQSTM1-206ENST00000466342 FASTKQ14296 549 aaKnown RBP11.39□□□□□ -0.59
SQSTM1-206ENST00000466342 CSHL1Q14406 222 aa11.39□□□□□ -0.59
SQSTM1-206ENST00000466342 PPP1R3AQ16821 1122 aa11.39□□□□□ -0.59
SQSTM1-206ENST00000466342 SLC5A12Q1EHB4 618 aa11.39□□□□□ -0.59
SQSTM1-206ENST00000466342 LGSNQ5TDP6 509 aa11.39□□□□□ -0.59
SQSTM1-206ENST00000466342 IGFL3Q6UXB1 125 aa11.39□□□□□ -0.59
SQSTM1-206ENST00000466342 MBOAT1Q6ZNC8 495 aa11.39□□□□□ -0.59
SQSTM1-206ENST00000466342 TBC1D1Q86TI0 1168 aaPredicted RBP11.39□□□□□ -0.59
SQSTM1-206ENST00000466342 TAX1BP1Q86VP1 789 aa11.39□□□□□ -0.59
SQSTM1-206ENST00000466342 SPATA6LQ8N4H0 392 aa11.39□□□□□ -0.59
SQSTM1-206ENST00000466342 C2orf73Q8N5S3 287 aaPredicted RBP11.39□□□□□ -0.59
SQSTM1-206ENST00000466342 ZNF480Q8WV37 535 aa11.39□□□□□ -0.59
SQSTM1-206ENST00000466342 SMPDL3AQ92484 453 aa11.39□□□□□ -0.59
SQSTM1-206ENST00000466342 TRIM54Q9BYV2 358 aa11.39□□□□□ -0.59
SQSTM1-206ENST00000466342 CHRNA10Q9GZZ6 450 aa11.39□□□□□ -0.59
SQSTM1-206ENST00000466342 ILKAPQ9H0C8 392 aaPredicted RBP11.39□□□□□ -0.59
SQSTM1-206ENST00000466342 CHST11Q9NPF2 352 aa11.39□□□□□ -0.59
SQSTM1-206ENST00000466342 ARL15Q9NXU5 204 aa11.39□□□□□ -0.59
SQSTM1-206ENST00000466342 STOX2Q9P2F5 926 aaPredicted RBP11.39□□□□□ -0.59
SQSTM1-206ENST00000466342 PSMC3IPQ9P2W1 217 aaPredicted RBP11.39□□□□□ -0.59
SQSTM1-206ENST00000466342 CTNNAL1Q9UBT7 734 aa11.39□□□□□ -0.59
SQSTM1-206ENST00000466342 ACOT9Q9Y305 439 aa11.39□□□□□ -0.59
SQSTM1-206ENST00000466342 ANKHD1Q8IWZ3 2542 aaKnown RBP11.39□□□□□ -0.59
SQSTM1-206ENST00000466342 IQANK1A0A1B0GTG1 560 aa11.38□□□□□ -0.59
SQSTM1-206ENST00000466342 A0A1W2PPV9 198 aa11.38□□□□□ -0.59
SQSTM1-206ENST00000466342 TRIM49D1C9J1S8 452 aa11.38□□□□□ -0.59
SQSTM1-206ENST00000466342 E7ENX8 843 aa11.38□□□□□ -0.59
SQSTM1-206ENST00000466342 MEN1O00255 615 aa11.38□□□□□ -0.59
SQSTM1-206ENST00000466342 FKBP9O95302 570 aa11.38□□□□□ -0.59
SQSTM1-206ENST00000466342 SNRPAP09012 282 aaKnown RBP11.38□□□□□ -0.59
SQSTM1-206ENST00000466342 HBQ1P09105 142 aa11.38□□□□□ -0.59
SQSTM1-206ENST00000466342 LTA4HP09960 611 aaKnown RBP11.38□□□□□ -0.59
SQSTM1-206ENST00000466342 NUDT17P0C025 328 aa11.38□□□□□ -0.59
SQSTM1-206ENST00000466342 RAB40ALP0C0E4 278 aa11.38□□□□□ -0.59
SQSTM1-206ENST00000466342 PVRP15151 417 aa11.38□□□□□ -0.59
SQSTM1-206ENST00000466342 CAPN3P20807 821 aa11.38□□□□□ -0.59
SQSTM1-206ENST00000466342 PSMB5P28074 263 aa11.38□□□□□ -0.59
SQSTM1-206ENST00000466342 GMPRP36959 345 aa11.38□□□□□ -0.59
SQSTM1-206ENST00000466342 RRADP55042 308 aa11.38□□□□□ -0.59
SQSTM1-206ENST00000466342 CDKL1Q00532 357 aa11.38□□□□□ -0.59
SQSTM1-206ENST00000466342 TAP2Q03519 686 aa11.38□□□□□ -0.59
SQSTM1-206ENST00000466342 GPS2Q13227 327 aa11.38□□□□□ -0.59
SQSTM1-206ENST00000466342 TSNQ15631 228 aaKnown RBP11.38□□□□□ -0.59
SQSTM1-206ENST00000466342 VWA5B1Q5TIE3 1220 aa11.38□□□□□ -0.59
SQSTM1-206ENST00000466342 TRIM73Q86UV7 250 aa11.38□□□□□ -0.59
SQSTM1-206ENST00000466342 FJX1Q86VR8 437 aa11.38□□□□□ -0.59
SQSTM1-206ENST00000466342 LRRC56Q8IYG6 542 aaPredicted RBP11.38□□□□□ -0.59
SQSTM1-206ENST00000466342 SYTL1Q8IYJ3 562 aa11.38□□□□□ -0.59
SQSTM1-206ENST00000466342 DSELQ8IZU8 1212 aa11.38□□□□□ -0.59
SQSTM1-206ENST00000466342 CENPLQ8N0S6 344 aaPredicted RBP11.38□□□□□ -0.59
SQSTM1-206ENST00000466342 MREGQ8N565 214 aa11.38□□□□□ -0.59
SQSTM1-206ENST00000466342 SLC38A9Q8NBW4 561 aa11.38□□□□□ -0.59
SQSTM1-206ENST00000466342 PPFIBP2Q8ND30 876 aa11.38□□□□□ -0.59
SQSTM1-206ENST00000466342 OR2A1Q8NGT9 310 aa11.38□□□□□ -0.59
SQSTM1-206ENST00000466342 OR1L3Q8NH93 324 aa11.38□□□□□ -0.59
SQSTM1-206ENST00000466342 MR1Q95460 341 aa11.38□□□□□ -0.59
SQSTM1-206ENST00000466342 KIAA1191Q96A73 305 aa11.38□□□□□ -0.59
SQSTM1-206ENST00000466342 PTERQ96BW5 349 aa11.38□□□□□ -0.59
SQSTM1-206ENST00000466342 MTBPQ96DY7 904 aa11.38□□□□□ -0.59
SQSTM1-206ENST00000466342 NMRAL1Q9HBL8 299 aa11.38□□□□□ -0.59
SQSTM1-206ENST00000466342 UTP6Q9NYH9 597 aaKnown RBP11.38□□□□□ -0.59
SQSTM1-206ENST00000466342 OARD1Q9Y530 152 aa11.38□□□□□ -0.59
SQSTM1-206ENST00000466342 CCDC189A1A4V9 331 aa11.37□□□□□ -0.59
SQSTM1-206ENST00000466342 TMEM150CB9EJG8 249 aa11.37□□□□□ -0.59
SQSTM1-206ENST00000466342 GUCA1CO95843 209 aa11.37□□□□□ -0.59
SQSTM1-206ENST00000466342 SNRPB2P08579 225 aaKnown RBP11.37□□□□□ -0.59
SQSTM1-206ENST00000466342 ANXA5P08758 320 aa11.37□□□□□ -0.59
SQSTM1-206ENST00000466342 STSP08842 583 aa11.37□□□□□ -0.59
SQSTM1-206ENST00000466342 COX6B1P14854 86 aa11.37□□□□□ -0.59
SQSTM1-206ENST00000466342 RORAP35398 523 aa11.37□□□□□ -0.59
SQSTM1-206ENST00000466342 TBPL1P62380 186 aa11.37□□□□□ -0.59
SQSTM1-206ENST00000466342 IRF9Q00978 393 aa11.37□□□□□ -0.59
SQSTM1-206ENST00000466342 DLG1Q12959 904 aa11.37□□□□□ -0.59
SQSTM1-206ENST00000466342 TSTA3Q13630 321 aaPredicted RBP11.37□□□□□ -0.59
SQSTM1-206ENST00000466342 RAPSNQ13702 412 aa11.37□□□□□ -0.59
SQSTM1-206ENST00000466342 RASA2Q15283 850 aa11.37□□□□□ -0.59
SQSTM1-206ENST00000466342 OR4D1Q15615 310 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms