RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 C17orf64Q86WR6 236 aa16.94■□□□□ 0.3
COL7A1-205ENST00000465238 TDRPQ86YL5 185 aa16.94■□□□□ 0.3
COL7A1-205ENST00000465238 MREGQ8N565 214 aa16.94■□□□□ 0.3
COL7A1-205ENST00000465238 FAM26EQ8N5C1 309 aa16.94■□□□□ 0.3
COL7A1-205ENST00000465238 RHEBL1Q8TAI7 183 aa16.94■□□□□ 0.3
COL7A1-205ENST00000465238 EPS8L3Q8TE67 593 aaKnown RBP16.94■□□□□ 0.3
COL7A1-205ENST00000465238 RHBDF1Q96CC6 855 aa16.94■□□□□ 0.3
COL7A1-205ENST00000465238 SLC7A5P2Q9GIP4 190 aa16.94■□□□□ 0.3
COL7A1-205ENST00000465238 SLC6A20Q9NP91 592 aa16.94■□□□□ 0.3
COL7A1-205ENST00000465238 WWOXQ9NZC7 414 aa16.94■□□□□ 0.3
COL7A1-205ENST00000465238 PCDHGB7Q9Y5F8 929 aa16.94■□□□□ 0.3
COL7A1-205ENST00000465238 KLK4Q9Y5K2 254 aa16.94■□□□□ 0.3
COL7A1-205ENST00000465238 SPTBN1Q01082 2364 aaKnown RBP16.94■□□□□ 0.3
COL7A1-205ENST00000465238 TTLL8A6PVC2 850 aa16.93■□□□□ 0.3
COL7A1-205ENST00000465238 SUPT3HB4E1H0 165 aa16.93■□□□□ 0.3
COL7A1-205ENST00000465238 E7EQ34 232 aa16.93■□□□□ 0.3
COL7A1-205ENST00000465238 CDH16O75309 829 aa16.93■□□□□ 0.3
COL7A1-205ENST00000465238 ERLIN1O75477 346 aa16.93■□□□□ 0.3
COL7A1-205ENST00000465238 SUPT3HO75486 399 aa16.93■□□□□ 0.3
COL7A1-205ENST00000465238 CAPN1P07384 714 aa16.93■□□□□ 0.3
COL7A1-205ENST00000465238 NPPBP16860 134 aa16.93■□□□□ 0.3
COL7A1-205ENST00000465238 KRT15P19012 456 aa16.93■□□□□ 0.3
COL7A1-205ENST00000465238 KCNC1P48547 511 aa16.93■□□□□ 0.3
COL7A1-205ENST00000465238 RASA2Q15283 850 aa16.93■□□□□ 0.3
COL7A1-205ENST00000465238 ZXDCQ2QGD7 858 aaPredicted RBP16.93■□□□□ 0.3
COL7A1-205ENST00000465238 DEFB110Q30KQ9 67 aa16.93■□□□□ 0.3
COL7A1-205ENST00000465238 PTCHD3Q3KNS1 767 aa16.93■□□□□ 0.3
COL7A1-205ENST00000465238 FAM198BQ6UWH4 519 aa16.93■□□□□ 0.3
COL7A1-205ENST00000465238 THOC6Q86W42 341 aaKnown RBP16.93■□□□□ 0.3
COL7A1-205ENST00000465238 MCATQ8IVS2 390 aaKnown RBP16.93■□□□□ 0.3
COL7A1-205ENST00000465238 GPR135Q8IZ08 494 aa16.93■□□□□ 0.3
COL7A1-205ENST00000465238 PLD6Q8N2A8 252 aaKnown RBP16.93■□□□□ 0.3
COL7A1-205ENST00000465238 OR2W6PQ8NHA6 318 aa16.93■□□□□ 0.3
COL7A1-205ENST00000465238 SCYL1Q96KG9 808 aa16.93■□□□□ 0.3
COL7A1-205ENST00000465238 GPR78Q96P69 363 aa16.93■□□□□ 0.3
COL7A1-205ENST00000465238 ATOH8Q96SQ7 321 aa16.93■□□□□ 0.3
COL7A1-205ENST00000465238 PLCD4Q9BRC7 762 aa16.93■□□□□ 0.3
COL7A1-205ENST00000465238 CNOT10Q9H9A5 744 aaKnown RBP16.93■□□□□ 0.3
COL7A1-205ENST00000465238 TMEM184CQ9NVA4 438 aa16.93■□□□□ 0.3
COL7A1-205ENST00000465238 IRAK4Q9NWZ3 460 aa16.93■□□□□ 0.3
COL7A1-205ENST00000465238 NUDT4Q9NZJ9 180 aa16.93■□□□□ 0.3
COL7A1-205ENST00000465238 G3BP2Q9UN86 482 aaKnown RBP16.93■□□□□ 0.3
COL7A1-205ENST00000465238 OR2A25A4D2G3 310 aa16.92■□□□□ 0.3
COL7A1-205ENST00000465238 C9J4A7 227 aa16.92■□□□□ 0.3
COL7A1-205ENST00000465238 ZNF749O43361 778 aa16.92■□□□□ 0.3
COL7A1-205ENST00000465238 CEACAM4O75871 244 aa16.92■□□□□ 0.3
COL7A1-205ENST00000465238 RBP1P09455 135 aa16.92■□□□□ 0.3
COL7A1-205ENST00000465238 AGXTP21549 392 aa16.92■□□□□ 0.3
COL7A1-205ENST00000465238 GABRA4P48169 554 aa16.92■□□□□ 0.3
COL7A1-205ENST00000465238 NCF4Q15080 339 aa16.92■□□□□ 0.3
COL7A1-205ENST00000465238 MED25Q71SY5 747 aa16.92■□□□□ 0.3
COL7A1-205ENST00000465238 PAQR7Q86WK9 346 aa16.92■□□□□ 0.3
COL7A1-205ENST00000465238 EFCAB3Q8N7B9 438 aa16.92■□□□□ 0.3
COL7A1-205ENST00000465238 TMEM102Q8N9M5 508 aaPredicted RBP16.92■□□□□ 0.3
COL7A1-205ENST00000465238 ACMSDQ8TDX5 336 aa16.92■□□□□ 0.3
COL7A1-205ENST00000465238 C17orf62Q9BQA9 187 aa16.92■□□□□ 0.3
COL7A1-205ENST00000465238 ROPN1BQ9BZX4 212 aaPredicted RBP16.92■□□□□ 0.3
COL7A1-205ENST00000465238 ROPN1Q9HAT0 212 aaPredicted RBP16.92■□□□□ 0.3
COL7A1-205ENST00000465238 ZNF358Q9NW07 568 aa16.92■□□□□ 0.3
COL7A1-205ENST00000465238 CUEDC1Q9NWM3 386 aaPredicted RBP16.92■□□□□ 0.3
COL7A1-205ENST00000465238 EURLQ9NYK6 297 aa16.92■□□□□ 0.3
COL7A1-205ENST00000465238 SLC22A14Q9Y267 594 aa16.92■□□□□ 0.3
COL7A1-205ENST00000465238 PADI2Q9Y2J8 665 aa16.92■□□□□ 0.3
COL7A1-205ENST00000465238 DYRK1BQ9Y463 629 aa16.92■□□□□ 0.3
COL7A1-205ENST00000465238 ZNF451Q9Y4E5 1061 aa16.92■□□□□ 0.3
COL7A1-205ENST00000465238 UTP20O75691 2785 aaKnown RBP16.92■□□□□ 0.3
COL7A1-205ENST00000465238 A0A0J9YVX5 310 aa16.91■□□□□ 0.3
COL7A1-205ENST00000465238 H7BY64 318 aa16.91■□□□□ 0.3
COL7A1-205ENST00000465238 GOLGA8RI6L899 631 aa16.91■□□□□ 0.3
COL7A1-205ENST00000465238 UBXN8O00124 270 aa16.91■□□□□ 0.3
COL7A1-205ENST00000465238 VPS4BO75351 444 aa16.91■□□□□ 0.3
COL7A1-205ENST00000465238 OR2B3O76000 313 aa16.91■□□□□ 0.3
COL7A1-205ENST00000465238 IPO13O94829 963 aaKnown RBP16.91■□□□□ 0.3
COL7A1-205ENST00000465238 WDR47O94967 919 aa16.91■□□□□ 0.3
COL7A1-205ENST00000465238 RRADP55042 308 aa16.91■□□□□ 0.3
COL7A1-205ENST00000465238 C18orf21Q32NC0 220 aaPredicted RBP16.91■□□□□ 0.3
COL7A1-205ENST00000465238 ZNF425Q6IV72 752 aa16.91■□□□□ 0.3
COL7A1-205ENST00000465238 HPS6Q86YV9 775 aa16.91■□□□□ 0.3
COL7A1-205ENST00000465238 RIBC1Q8N443 379 aaPredicted RBP16.91■□□□□ 0.3
COL7A1-205ENST00000465238 PDPRQ8NCN5 879 aa16.91■□□□□ 0.3
COL7A1-205ENST00000465238 PRAP1Q96NZ9 151 aa16.91■□□□□ 0.3
COL7A1-205ENST00000465238 OR4K3Q96R72 315 aa16.91■□□□□ 0.3
COL7A1-205ENST00000465238 ZFYVE21Q9BQ24 234 aa16.91■□□□□ 0.3
COL7A1-205ENST00000465238 SELENOSQ9BQE4 189 aa16.91■□□□□ 0.3
COL7A1-205ENST00000465238 PTBP2Q9UKA9 531 aaKnown RBP16.91■□□□□ 0.3
COL7A1-205ENST00000465238 VPS4AQ9UN37 437 aa16.91■□□□□ 0.3
COL7A1-205ENST00000465238 KCNE2Q9Y6J6 123 aa16.91■□□□□ 0.3
COL7A1-205ENST00000465238 AP1M2Q9Y6Q5 423 aa16.91■□□□□ 0.3
COL7A1-205ENST00000465238 MDC1Q14676 2089 aaKnown RBP16.91■□□□□ 0.3
COL7A1-205ENST00000465238 FER1L5A0AVI2 2057 aa16.9■□□□□ 0.3
COL7A1-205ENST00000465238 IGKV1-8A0A0C4DH67 115 aa16.9■□□□□ 0.3
COL7A1-205ENST00000465238 A0A1W2PPM1 405 aa16.9■□□□□ 0.3
COL7A1-205ENST00000465238 TAPBPO15533 448 aa16.9■□□□□ 0.3
COL7A1-205ENST00000465238 HCRTR1O43613 425 aa16.9■□□□□ 0.3
COL7A1-205ENST00000465238 SRPX2O60687 465 aaPredicted RBP16.9■□□□□ 0.3
COL7A1-205ENST00000465238 CTSVO60911 334 aa16.9■□□□□ 0.3
COL7A1-205ENST00000465238 STK16O75716 305 aa16.9■□□□□ 0.3
COL7A1-205ENST00000465238 PYGBP11216 843 aa16.9■□□□□ 0.3
COL7A1-205ENST00000465238 CDH1P12830 882 aa16.9■□□□□ 0.3
COL7A1-205ENST00000465238 GP1BBP13224 206 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms