RNA–Protein interactions for RNA: ENST00000464493.5

SQSTM1-205, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 532 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-205ENST00000464493 TRBC2A0A5B9 178 aa13.84□□□□□ -0.19
SQSTM1-205ENST00000464493 K7EPI3 171 aa13.84□□□□□ -0.19
SQSTM1-205ENST00000464493 CLGNO14967 610 aa13.84□□□□□ -0.19
SQSTM1-205ENST00000464493 RAB40ALP0C0E4 278 aa13.84□□□□□ -0.19
SQSTM1-205ENST00000464493 CXCR2P25025 360 aa13.84□□□□□ -0.19
SQSTM1-205ENST00000464493 VARSP26640 1264 aaKnown RBP13.84□□□□□ -0.19
SQSTM1-205ENST00000464493 RPS15P62841 145 aaKnown RBP13.84□□□□□ -0.19
SQSTM1-205ENST00000464493 SETDB1Q15047 1291 aa13.84□□□□□ -0.19
SQSTM1-205ENST00000464493 PDK4Q16654 411 aa13.84□□□□□ -0.19
SQSTM1-205ENST00000464493 MUM1Q2TAK8 710 aa13.84□□□□□ -0.19
SQSTM1-205ENST00000464493 NKAIN1Q4KMZ8 207 aa13.84□□□□□ -0.19
SQSTM1-205ENST00000464493 GARNL3Q5VVW2 1013 aa13.84□□□□□ -0.19
SQSTM1-205ENST00000464493 ATG9BQ674R7 924 aa13.84□□□□□ -0.19
SQSTM1-205ENST00000464493 SLCO4C1Q6ZQN7 724 aa13.84□□□□□ -0.19
SQSTM1-205ENST00000464493 VN1R4Q7Z5H5 301 aa13.84□□□□□ -0.19
SQSTM1-205ENST00000464493 ZNF740Q8NDX6 193 aa13.84□□□□□ -0.19
SQSTM1-205ENST00000464493 SNRNP27Q8WVK2 155 aaKnown RBP13.84□□□□□ -0.19
SQSTM1-205ENST00000464493 TM4SF19Q96DZ7 209 aa13.84□□□□□ -0.19
SQSTM1-205ENST00000464493 C17orf62Q9BQA9 187 aa13.84□□□□□ -0.19
SQSTM1-205ENST00000464493 ROPN1BQ9BZX4 212 aaPredicted RBP13.84□□□□□ -0.19
SQSTM1-205ENST00000464493 FAM117AQ9C073 453 aa13.84□□□□□ -0.19
SQSTM1-205ENST00000464493 MRPL46Q9H2W6 279 aaKnown RBP13.84□□□□□ -0.19
SQSTM1-205ENST00000464493 PRORYQ9H606 182 aa13.84□□□□□ -0.19
SQSTM1-205ENST00000464493 ROPN1Q9HAT0 212 aaPredicted RBP13.84□□□□□ -0.19
SQSTM1-205ENST00000464493 OPTCQ9UBM4 332 aa13.84□□□□□ -0.19
SQSTM1-205ENST00000464493 DCDC2Q9UHG0 476 aa13.84□□□□□ -0.19
SQSTM1-205ENST00000464493 TMCO1Q9UM00 188 aa13.84□□□□□ -0.19
SQSTM1-205ENST00000464493 FARSAQ9Y285 508 aaKnown RBP13.84□□□□□ -0.19
SQSTM1-205ENST00000464493 PCDHGA6Q9Y5G7 932 aa13.84□□□□□ -0.19
SQSTM1-205ENST00000464493 TNPO3Q9Y5L0 923 aaKnown RBP13.84□□□□□ -0.19
SQSTM1-205ENST00000464493 MRPS18BQ9Y676 258 aaKnown RBP13.84□□□□□ -0.19
SQSTM1-205ENST00000464493 LOC400499M0QZD8 3231 aa13.83□□□□□ -0.19
SQSTM1-205ENST00000464493 FER1L5A0AVI2 2057 aa13.83□□□□□ -0.2
SQSTM1-205ENST00000464493 FOXO6A8MYZ6 492 aa13.83□□□□□ -0.2
SQSTM1-205ENST00000464493 C9J4A7 227 aa13.83□□□□□ -0.2
SQSTM1-205ENST00000464493 TK2O00142 265 aa13.83□□□□□ -0.2
SQSTM1-205ENST00000464493 P2RX6O15547 441 aa13.83□□□□□ -0.2
SQSTM1-205ENST00000464493 SMIM24O75264 130 aa13.83□□□□□ -0.2
SQSTM1-205ENST00000464493 MED26O95402 600 aa13.83□□□□□ -0.2
SQSTM1-205ENST00000464493 STATHP02808 62 aa13.83□□□□□ -0.2
SQSTM1-205ENST00000464493 CAPN1P07384 714 aa13.83□□□□□ -0.2
SQSTM1-205ENST00000464493 GSTA1P08263 222 aa13.83□□□□□ -0.2
SQSTM1-205ENST00000464493 ATXN8OSP0DMR3 200 aa13.83□□□□□ -0.2
SQSTM1-205ENST00000464493 PIM1P11309 404 aaPredicted RBP13.83□□□□□ -0.2
SQSTM1-205ENST00000464493 PTPN4P29074 926 aa13.83□□□□□ -0.2
SQSTM1-205ENST00000464493 SCTRP47872 440 aa13.83□□□□□ -0.2
SQSTM1-205ENST00000464493 REEP5Q00765 189 aa13.83□□□□□ -0.2
SQSTM1-205ENST00000464493 RBBP5Q15291 538 aaKnown RBP13.83□□□□□ -0.2
SQSTM1-205ENST00000464493 XKR6Q5GH73 641 aa13.83□□□□□ -0.2
SQSTM1-205ENST00000464493 MLIPQ5VWP3 458 aa13.83□□□□□ -0.2
SQSTM1-205ENST00000464493 ASPGQ86U10 573 aa13.83□□□□□ -0.2
SQSTM1-205ENST00000464493 RIBC1Q8N443 379 aaPredicted RBP13.83□□□□□ -0.2
SQSTM1-205ENST00000464493 TMEM151AQ8N4L1 468 aa13.83□□□□□ -0.2
SQSTM1-205ENST00000464493 CAMKVQ8NCB2 501 aa13.83□□□□□ -0.2
SQSTM1-205ENST00000464493 SLC13A3Q8WWT9 602 aa13.83□□□□□ -0.2
SQSTM1-205ENST00000464493 PHF21BQ96EK2 531 aa13.83□□□□□ -0.2
SQSTM1-205ENST00000464493 C10orf90Q96M02 699 aa13.83□□□□□ -0.2
SQSTM1-205ENST00000464493 RUFY1Q96T51 708 aa13.83□□□□□ -0.2
SQSTM1-205ENST00000464493 SPNS1Q9H2V7 528 aa13.83□□□□□ -0.2
SQSTM1-205ENST00000464493 EHD1Q9H4M9 534 aa13.83□□□□□ -0.2
SQSTM1-205ENST00000464493 GEMIN8Q9NWZ8 242 aaKnown RBP13.83□□□□□ -0.2
SQSTM1-205ENST00000464493 TMEM216Q9P0N5 145 aa13.83□□□□□ -0.2
SQSTM1-205ENST00000464493 IFT80Q9P2H3 777 aaPredicted RBP13.83□□□□□ -0.2
SQSTM1-205ENST00000464493 GPN3Q9UHW5 284 aaPredicted RBP13.83□□□□□ -0.2
SQSTM1-205ENST00000464493 ANGPTL3Q9Y5C1 460 aa13.83□□□□□ -0.2
SQSTM1-205ENST00000464493 NBEAQ8NFP9 2946 aa13.83□□□□□ -0.2
SQSTM1-205ENST00000464493 MGAQ8IWI9 3026 aa13.82□□□□□ -0.2
SQSTM1-205ENST00000464493 ZNF891A8MT65 544 aaPredicted RBP13.82□□□□□ -0.2
SQSTM1-205ENST00000464493 PRAMEF4O60810 478 aa13.82□□□□□ -0.2
SQSTM1-205ENST00000464493 ONECUT2O95948 504 aa13.82□□□□□ -0.2
SQSTM1-205ENST00000464493 SBK3P0C264 359 aa13.82□□□□□ -0.2
SQSTM1-205ENST00000464493 SLC35G6P0C7Q6 338 aa13.82□□□□□ -0.2
SQSTM1-205ENST00000464493 EPB42P16452 691 aa13.82□□□□□ -0.2
SQSTM1-205ENST00000464493 EPORP19235 508 aa13.82□□□□□ -0.2
SQSTM1-205ENST00000464493 ITGAXP20702 1163 aa13.82□□□□□ -0.2
SQSTM1-205ENST00000464493 AHRP35869 848 aa13.82□□□□□ -0.2
SQSTM1-205ENST00000464493 OR1D4P47884 311 aa13.82□□□□□ -0.2
SQSTM1-205ENST00000464493 MC1RQ01726 317 aa13.82□□□□□ -0.2
SQSTM1-205ENST00000464493 IRF8Q02556 426 aa13.82□□□□□ -0.2
SQSTM1-205ENST00000464493 PWP1Q13610 501 aa13.82□□□□□ -0.2
SQSTM1-205ENST00000464493 SLBPQ14493 270 aaKnown RBP eCLIP13.82□□□□□ -0.2
SQSTM1-205ENST00000464493 NCF4Q15080 339 aa13.82□□□□□ -0.2
SQSTM1-205ENST00000464493 PCBP2Q15366 365 aaKnown RBP eCLIP13.82□□□□□ -0.2
SQSTM1-205ENST00000464493 NDUFA9Q16795 377 aa13.82□□□□□ -0.2
SQSTM1-205ENST00000464493 PRAMEF9Q5VWM5 478 aa13.82□□□□□ -0.2
SQSTM1-205ENST00000464493 METTL2BQ6P1Q9 378 aaKnown RBP13.82□□□□□ -0.2
SQSTM1-205ENST00000464493 PRMT9Q6P2P2 845 aa13.82□□□□□ -0.2
SQSTM1-205ENST00000464493 C16orf46Q6P387 395 aa13.82□□□□□ -0.2
SQSTM1-205ENST00000464493 FAM198BQ6UWH4 519 aa13.82□□□□□ -0.2
SQSTM1-205ENST00000464493 SH2D5Q6ZV89 423 aa13.82□□□□□ -0.2
SQSTM1-205ENST00000464493 GPR155Q7Z3F1 870 aa13.82□□□□□ -0.2
SQSTM1-205ENST00000464493 KRT78Q8N1N4 520 aa13.82□□□□□ -0.2
SQSTM1-205ENST00000464493 ARHGEF39Q8N4T4 335 aa13.82□□□□□ -0.2
SQSTM1-205ENST00000464493 DTWD1Q8N5C7 304 aa13.82□□□□□ -0.2
SQSTM1-205ENST00000464493 METTL27Q8N6F8 245 aaPredicted RBP13.82□□□□□ -0.2
SQSTM1-205ENST00000464493 TEX9Q8N6V9 391 aa13.82□□□□□ -0.2
SQSTM1-205ENST00000464493 PTGR2Q8N8N7 351 aaPredicted RBP13.82□□□□□ -0.2
SQSTM1-205ENST00000464493 ENDOVQ8N8Q3 282 aaKnown RBP13.82□□□□□ -0.2
SQSTM1-205ENST00000464493 STARD8Q92502 1023 aa13.82□□□□□ -0.2
SQSTM1-205ENST00000464493 WDR34Q96EX3 536 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms