RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 SHANK1Q9Y566 2161 aa20.14■□□□□ 0.81
HMGB3-205ENST00000455596 IDSB3KWA1 339 aa20.14■□□□□ 0.81
HMGB3-205ENST00000455596 H0YIG0 161 aa20.14■□□□□ 0.81
HMGB3-205ENST00000455596 LCMT2O60294 686 aaKnown RBP20.14■□□□□ 0.81
HMGB3-205ENST00000455596 NSA2O95478 260 aaKnown RBP20.14■□□□□ 0.81
HMGB3-205ENST00000455596 HPP00738 406 aa20.14■□□□□ 0.81
HMGB3-205ENST00000455596 HEXBP07686 556 aa20.14■□□□□ 0.81
HMGB3-205ENST00000455596 BCL6P41182 706 aa20.14■□□□□ 0.81
HMGB3-205ENST00000455596 CCR8P51685 355 aa20.14■□□□□ 0.81
HMGB3-205ENST00000455596 CAV1Q03135 178 aa20.14■□□□□ 0.81
HMGB3-205ENST00000455596 PPP1R3AQ16821 1122 aa20.14■□□□□ 0.81
HMGB3-205ENST00000455596 SYT16Q17RD7 645 aa20.14■□□□□ 0.81
HMGB3-205ENST00000455596 ATG9BQ674R7 924 aa20.14■□□□□ 0.81
HMGB3-205ENST00000455596 ASPGQ86U10 573 aa20.14■□□□□ 0.81
HMGB3-205ENST00000455596 PARP9Q8IXQ6 854 aa20.14■□□□□ 0.81
HMGB3-205ENST00000455596 ZADH2Q8N4Q0 377 aa20.14■□□□□ 0.81
HMGB3-205ENST00000455596 Q8NA96 180 aa20.14■□□□□ 0.81
HMGB3-205ENST00000455596 ABHD11Q8NFV4 315 aa20.14■□□□□ 0.81
HMGB3-205ENST00000455596 TM4SF19Q96DZ7 209 aa20.14■□□□□ 0.81
HMGB3-205ENST00000455596 OR4K3Q96R72 315 aa20.14■□□□□ 0.81
HMGB3-205ENST00000455596 MCMBPQ9BTE3 642 aa20.14■□□□□ 0.81
HMGB3-205ENST00000455596 GPAMQ9HCL2 828 aa20.14■□□□□ 0.81
HMGB3-205ENST00000455596 LUZP4Q9P127 313 aa20.14■□□□□ 0.81
HMGB3-205ENST00000455596 NPEPPSL1A6NEC2 478 aa20.13■□□□□ 0.81
HMGB3-205ENST00000455596 CDC7O00311 574 aa20.13■□□□□ 0.81
HMGB3-205ENST00000455596 PIAS1O75925 651 aa20.13■□□□□ 0.81
HMGB3-205ENST00000455596 GSTA2P09210 222 aa20.13■□□□□ 0.81
HMGB3-205ENST00000455596 SLC35G6P0C7Q6 338 aa20.13■□□□□ 0.81
HMGB3-205ENST00000455596 CXCR2P25025 360 aa20.13■□□□□ 0.81
HMGB3-205ENST00000455596 PLTPP55058 493 aa20.13■□□□□ 0.81
HMGB3-205ENST00000455596 CDKL1Q00532 357 aa20.13■□□□□ 0.81
HMGB3-205ENST00000455596 POU4F1Q01851 419 aa20.13■□□□□ 0.81
HMGB3-205ENST00000455596 CKAP4Q07065 602 aaKnown RBP20.13■□□□□ 0.81
HMGB3-205ENST00000455596 TMEM214Q6NUQ4 689 aaKnown RBP20.13■□□□□ 0.81
HMGB3-205ENST00000455596 C3orf62Q6ZUJ4 267 aa20.13■□□□□ 0.81
HMGB3-205ENST00000455596 CYS1Q717R9 158 aa20.13■□□□□ 0.81
HMGB3-205ENST00000455596 ZNF572Q7Z3I7 529 aaPredicted RBP20.13■□□□□ 0.81
HMGB3-205ENST00000455596 CEP97Q8IW35 865 aa20.13■□□□□ 0.81
HMGB3-205ENST00000455596 TBC1D19Q8N5T2 526 aa20.13■□□□□ 0.81
HMGB3-205ENST00000455596 MFSD9Q8NBP5 474 aa20.13■□□□□ 0.81
HMGB3-205ENST00000455596 OR4K1Q8NGD4 311 aa20.13■□□□□ 0.81
HMGB3-205ENST00000455596 OR9A4Q8NGU2 314 aa20.13■□□□□ 0.81
HMGB3-205ENST00000455596 SLC13A3Q8WWT9 602 aa20.13■□□□□ 0.81
HMGB3-205ENST00000455596 C8orf44Q96CB5 159 aa20.13■□□□□ 0.81
HMGB3-205ENST00000455596 THOC3Q96J01 351 aaKnown RBP20.13■□□□□ 0.81
HMGB3-205ENST00000455596 MACROD1Q9BQ69 325 aa20.13■□□□□ 0.81
HMGB3-205ENST00000455596 PHACTR1Q9C0D0 580 aa20.13■□□□□ 0.81
HMGB3-205ENST00000455596 LHPPQ9H008 270 aa20.13■□□□□ 0.81
HMGB3-205ENST00000455596 B3GNT3Q9Y2A9 372 aa20.13■□□□□ 0.81
HMGB3-205ENST00000455596 OARD1Q9Y530 152 aa20.13■□□□□ 0.81
HMGB3-205ENST00000455596 SCN2AQ99250 2005 aa20.13■□□□□ 0.81
HMGB3-205ENST00000455596 TCRBV9S1A1TA0A576 114 aa20.12■□□□□ 0.81
HMGB3-205ENST00000455596 CXorf49A8MYA2 514 aaPredicted RBP20.12■□□□□ 0.81
HMGB3-205ENST00000455596 PCDH17O14917 1159 aa20.12■□□□□ 0.81
HMGB3-205ENST00000455596 VPS4BO75351 444 aa20.12■□□□□ 0.81
HMGB3-205ENST00000455596 IL1RNP18510 177 aa20.12■□□□□ 0.81
HMGB3-205ENST00000455596 VARSP26640 1264 aaKnown RBP20.12■□□□□ 0.81
HMGB3-205ENST00000455596 SNRPNP63162 240 aaKnown RBP20.12■□□□□ 0.81
HMGB3-205ENST00000455596 MAT1AQ00266 395 aaKnown RBP20.12■□□□□ 0.81
HMGB3-205ENST00000455596 MEF2AQ02078 507 aaPredicted RBP20.12■□□□□ 0.81
HMGB3-205ENST00000455596 CSHL1Q14406 222 aa20.12■□□□□ 0.81
HMGB3-205ENST00000455596 INPP5JQ15735 1006 aaPredicted RBP20.12■□□□□ 0.81
HMGB3-205ENST00000455596 AGAP7PQ5VUJ5 663 aa20.12■□□□□ 0.81
HMGB3-205ENST00000455596 FRA10AC1Q70Z53 315 aa20.12■□□□□ 0.81
HMGB3-205ENST00000455596 ADAMTSL2Q86TH1 951 aa20.12■□□□□ 0.81
HMGB3-205ENST00000455596 ZC3H7AQ8IWR0 971 aaKnown RBP20.12■□□□□ 0.81
HMGB3-205ENST00000455596 KCT2Q8NC54 265 aa20.12■□□□□ 0.81
HMGB3-205ENST00000455596 FBXO25Q8TCJ0 367 aa20.12■□□□□ 0.81
HMGB3-205ENST00000455596 ANKRD49Q8WVL7 239 aa20.12■□□□□ 0.81
HMGB3-205ENST00000455596 SLC5A11Q8WWX8 675 aa20.12■□□□□ 0.81
HMGB3-205ENST00000455596 TSPAN17Q96FV3 270 aa20.12■□□□□ 0.81
HMGB3-205ENST00000455596 AGAP4Q96P64 663 aa20.12■□□□□ 0.81
HMGB3-205ENST00000455596 CPNE1Q99829 537 aa20.12■□□□□ 0.81
HMGB3-205ENST00000455596 EGFL8Q99944 293 aa20.12■□□□□ 0.81
HMGB3-205ENST00000455596 MESP1Q9BRJ9 268 aa20.12■□□□□ 0.81
HMGB3-205ENST00000455596 SARGQ9BW04 601 aa20.12■□□□□ 0.81
HMGB3-205ENST00000455596 ZNF160Q9HCG1 818 aa20.12■□□□□ 0.81
HMGB3-205ENST00000455596 ANKHQ9HCJ1 492 aa20.12■□□□□ 0.81
HMGB3-205ENST00000455596 CTNNAL1Q9UBT7 734 aa20.12■□□□□ 0.81
HMGB3-205ENST00000455596 VPS4AQ9UN37 437 aa20.12■□□□□ 0.81
HMGB3-205ENST00000455596 MTO1Q9Y2Z2 717 aaKnown RBP20.12■□□□□ 0.81
HMGB3-205ENST00000455596 DYRK1BQ9Y463 629 aa20.12■□□□□ 0.81
HMGB3-205ENST00000455596 CPAMD8Q8IZJ3 1885 aa20.11■□□□□ 0.81
HMGB3-205ENST00000455596 NSG1A0A0A6YYJ2 146 aa20.11■□□□□ 0.81
HMGB3-205ENST00000455596 TRBC2A0A5B9 178 aa20.11■□□□□ 0.81
HMGB3-205ENST00000455596 OR1F1O43749 312 aa20.11■□□□□ 0.81
HMGB3-205ENST00000455596 COX6A1P12074 109 aa20.11■□□□□ 0.81
HMGB3-205ENST00000455596 Q0VFX4 171 aa20.11■□□□□ 0.81
HMGB3-205ENST00000455596 PLEKHN1Q494U1 663 aaPredicted RBP20.11■□□□□ 0.81
HMGB3-205ENST00000455596 CATSPEREQ5SY80 951 aa20.11■□□□□ 0.81
HMGB3-205ENST00000455596 FAAH2Q6GMR7 532 aa20.11■□□□□ 0.81
HMGB3-205ENST00000455596 NDUFAF7Q7L592 441 aa20.11■□□□□ 0.81
HMGB3-205ENST00000455596 PRSS41Q7RTY9 318 aa20.11■□□□□ 0.81
HMGB3-205ENST00000455596 THOC6Q86W42 341 aaKnown RBP20.11■□□□□ 0.81
HMGB3-205ENST00000455596 CCDC25Q86WR0 208 aa20.11■□□□□ 0.81
HMGB3-205ENST00000455596 ZCCHC10Q8TBK6 192 aa20.11■□□□□ 0.81
HMGB3-205ENST00000455596 NEIL2Q969S2 332 aa20.11■□□□□ 0.81
HMGB3-205ENST00000455596 RBBP8Q99708 897 aa20.11■□□□□ 0.81
HMGB3-205ENST00000455596 ILKAPQ9H0C8 392 aaPredicted RBP20.11■□□□□ 0.81
HMGB3-205ENST00000455596 ZBTB20Q9HC78 741 aaPredicted RBP20.11■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms