RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 PEX5LQ8IYB4 626 aa3.93□□□□□ -1.78
VPS29-202ENST00000447578 ANKRD13CQ8N6S4 541 aa3.93□□□□□ -1.78
VPS29-202ENST00000447578 MLKLQ8NB16 471 aa3.93□□□□□ -1.78
VPS29-202ENST00000447578 ACVR1CQ8NER5 493 aa3.93□□□□□ -1.78
VPS29-202ENST00000447578 DBF4BQ8NFT6 615 aa3.93□□□□□ -1.78
VPS29-202ENST00000447578 PSMA8Q8TAA3 256 aa3.93□□□□□ -1.78
VPS29-202ENST00000447578 PPP4R1Q8TF05 950 aa3.93□□□□□ -1.78
VPS29-202ENST00000447578 SEPT1Q8WYJ6 367 aa3.93□□□□□ -1.78
VPS29-202ENST00000447578 PAGE5Q96GU1 130 aa3.93□□□□□ -1.78
VPS29-202ENST00000447578 MUS81Q96NY9 551 aa3.93□□□□□ -1.78
VPS29-202ENST00000447578 TMEM237Q96Q45 408 aa3.93□□□□□ -1.78
VPS29-202ENST00000447578 HSD3B7Q9H2F3 369 aa3.93□□□□□ -1.78
VPS29-202ENST00000447578 DPAGT1Q9H3H5 408 aa3.93□□□□□ -1.78
VPS29-202ENST00000447578 KRCC1Q9NPI7 259 aaPredicted RBP3.93□□□□□ -1.78
VPS29-202ENST00000447578 NPAP1Q9NZP6 1156 aa3.93□□□□□ -1.78
VPS29-202ENST00000447578 PCDHGA1Q9Y5H4 931 aa3.93□□□□□ -1.78
VPS29-202ENST00000447578 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP3.93□□□□□ -1.78
VPS29-202ENST00000447578 TCHHQ07283 1943 aa3.93□□□□□ -1.78
VPS29-202ENST00000447578 AKAP11Q9UKA4 1901 aa3.93□□□□□ -1.78
VPS29-202ENST00000447578 NUP98P52948 1817 aa3.93□□□□□ -1.78
VPS29-202ENST00000447578 DUOX1Q9NRD9 1551 aa3.93□□□□□ -1.78
VPS29-202ENST00000447578 PDS5AQ29RF7 1337 aaKnown RBP3.93□□□□□ -1.78
VPS29-202ENST00000447578 LAMB2P55268 1798 aa3.92□□□□□ -1.78
VPS29-202ENST00000447578 FEZF1A0PJY2 475 aa3.92□□□□□ -1.78
VPS29-202ENST00000447578 OR2M5A3KFT3 312 aa3.92□□□□□ -1.78
VPS29-202ENST00000447578 YDJCA8MPS7 323 aa3.92□□□□□ -1.78
VPS29-202ENST00000447578 KIF2AO00139 706 aaPredicted RBP3.92□□□□□ -1.78
VPS29-202ENST00000447578 PGRMC2O15173 223 aa3.92□□□□□ -1.78
VPS29-202ENST00000447578 CRCPO75575 148 aa3.92□□□□□ -1.78
VPS29-202ENST00000447578 ACSL3O95573 720 aa3.92□□□□□ -1.78
VPS29-202ENST00000447578 PPP1R3DO95685 299 aa3.92□□□□□ -1.78
VPS29-202ENST00000447578 BAG3O95817 575 aa3.92□□□□□ -1.78
VPS29-202ENST00000447578 CH25HO95992 272 aa3.92□□□□□ -1.78
VPS29-202ENST00000447578 INHBAP08476 426 aa3.92□□□□□ -1.78
VPS29-202ENST00000447578 UROSP10746 265 aa3.92□□□□□ -1.78
VPS29-202ENST00000447578 GAP43P17677 238 aa3.92□□□□□ -1.78
VPS29-202ENST00000447578 CASP1P29466 404 aa3.92□□□□□ -1.78
VPS29-202ENST00000447578 CLCNKAP51800 687 aa3.92□□□□□ -1.78
VPS29-202ENST00000447578 ART1P52961 327 aa3.92□□□□□ -1.78
VPS29-202ENST00000447578 KIAA1024LP59773 190 aa3.92□□□□□ -1.78
VPS29-202ENST00000447578 SEC61BP60468 96 aaKnown RBP3.92□□□□□ -1.78
VPS29-202ENST00000447578 ERVFC1-1P60608 527 aa3.92□□□□□ -1.78
VPS29-202ENST00000447578 GSTO1P78417 241 aa3.92□□□□□ -1.78
VPS29-202ENST00000447578 ARF5P84085 180 aa3.92□□□□□ -1.78
VPS29-202ENST00000447578 IL1RL1Q01638 556 aa3.92□□□□□ -1.78
VPS29-202ENST00000447578 PRKCZQ05513 592 aa3.92□□□□□ -1.78
VPS29-202ENST00000447578 NCBP1Q09161 790 aaKnown RBP3.92□□□□□ -1.78
VPS29-202ENST00000447578 LASP1Q14847 261 aaKnown RBP3.92□□□□□ -1.78
VPS29-202ENST00000447578 PPA1Q15181 289 aa3.92□□□□□ -1.78
VPS29-202ENST00000447578 FAM76BQ5HYJ3 339 aa3.92□□□□□ -1.78
VPS29-202ENST00000447578 PAPPA-AS1Q5QFB9 102 aa3.92□□□□□ -1.78
VPS29-202ENST00000447578 FNBP1LQ5T0N5 605 aa3.92□□□□□ -1.78
VPS29-202ENST00000447578 C12orf60Q5U649 245 aa3.92□□□□□ -1.78
VPS29-202ENST00000447578 FAM109BQ6ICB4 259 aaPredicted RBP3.92□□□□□ -1.78
VPS29-202ENST00000447578 KLHL10Q6JEL2 608 aa3.92□□□□□ -1.78
VPS29-202ENST00000447578 MFSD12Q6NUT3 480 aa3.92□□□□□ -1.78
VPS29-202ENST00000447578 SLC27A1Q6PCB7 646 aa3.92□□□□□ -1.78
VPS29-202ENST00000447578 SYT10Q6XYQ8 523 aa3.92□□□□□ -1.78
VPS29-202ENST00000447578 LIN28BQ6ZN17 250 aaKnown RBP eCLIP3.92□□□□□ -1.784e-10■■■■□ 25.2
VPS29-202ENST00000447578 ARMC9Q7Z3E5 817 aa3.92□□□□□ -1.78
VPS29-202ENST00000447578 VSTM4Q8IW00 320 aa3.92□□□□□ -1.78
VPS29-202ENST00000447578 MAP7D3Q8IWC1 876 aa3.92□□□□□ -1.78
VPS29-202ENST00000447578 CHERPQ8IWX8 916 aaKnown RBP3.92□□□□□ -1.78
VPS29-202ENST00000447578 ZNF444Q8N0Y2 327 aaPredicted RBP3.92□□□□□ -1.78
VPS29-202ENST00000447578 PDCL2Q8N4E4 241 aa3.92□□□□□ -1.78
VPS29-202ENST00000447578 CNBD1Q8NA66 436 aa3.92□□□□□ -1.78
VPS29-202ENST00000447578 OR2AK2Q8NG84 335 aa3.92□□□□□ -1.78
VPS29-202ENST00000447578 OR5M8Q8NGP6 311 aa3.92□□□□□ -1.78
VPS29-202ENST00000447578 MAGEC3Q8TD91 643 aa3.92□□□□□ -1.78
VPS29-202ENST00000447578 SLC44A1Q8WWI5 657 aa3.92□□□□□ -1.78
VPS29-202ENST00000447578 ANKRD7Q92527 254 aa3.92□□□□□ -1.78
VPS29-202ENST00000447578 RAD54LQ92698 747 aa3.92□□□□□ -1.78
VPS29-202ENST00000447578 MTERF3Q96E29 417 aa3.92□□□□□ -1.78
VPS29-202ENST00000447578 DYNLL2Q96FJ2 89 aa3.92□□□□□ -1.78
VPS29-202ENST00000447578 TXNDC15Q96J42 360 aa3.92□□□□□ -1.78
VPS29-202ENST00000447578 EPSTI1Q96J88 318 aa3.92□□□□□ -1.78
VPS29-202ENST00000447578 RUNDC3BQ96NL0 473 aa3.92□□□□□ -1.78
VPS29-202ENST00000447578 QRFPRQ96P65 431 aa3.92□□□□□ -1.78
VPS29-202ENST00000447578 CCDC94Q9BW85 323 aaPredicted RBP3.92□□□□□ -1.78
VPS29-202ENST00000447578 CACNG6Q9BXT2 260 aa3.92□□□□□ -1.78
VPS29-202ENST00000447578 ZNF350Q9GZX5 532 aa3.92□□□□□ -1.78
VPS29-202ENST00000447578 ZNF556Q9HAH1 456 aa3.92□□□□□ -1.78
VPS29-202ENST00000447578 KLHL1Q9NR64 748 aa3.92□□□□□ -1.78
VPS29-202ENST00000447578 IARS2Q9NSE4 1012 aaKnown RBP3.92□□□□□ -1.78
VPS29-202ENST00000447578 TRPC4Q9UBN4 977 aa3.92□□□□□ -1.78
VPS29-202ENST00000447578 ABT1Q9ULW3 272 aaKnown RBP3.92□□□□□ -1.78
VPS29-202ENST00000447578 PADI3Q9ULW8 664 aa3.92□□□□□ -1.78
VPS29-202ENST00000447578 STX8Q9UNK0 236 aa3.92□□□□□ -1.78
VPS29-202ENST00000447578 GRIP1Q9Y3R0 1128 aa3.92□□□□□ -1.78
VPS29-202ENST00000447578 NME7Q9Y5B8 376 aa3.92□□□□□ -1.78
VPS29-202ENST00000447578 SNX9Q9Y5X1 595 aa3.92□□□□□ -1.78
VPS29-202ENST00000447578 BCORQ6W2J9 1755 aa3.91□□□□□ -1.78
VPS29-202ENST00000447578 MYH3P11055 1940 aa3.91□□□□□ -1.78
VPS29-202ENST00000447578 MYH15Q9Y2K3 1946 aa3.91□□□□□ -1.78
VPS29-202ENST00000447578 DOCK2Q92608 1830 aa3.91□□□□□ -1.78
VPS29-202ENST00000447578 A0A1B0GUV1 79 aa3.91□□□□□ -1.78
VPS29-202ENST00000447578 PRSS51A0A1B0GVH4 220 aa3.91□□□□□ -1.78
VPS29-202ENST00000447578 TMEM221A6NGB7 291 aa3.91□□□□□ -1.78
VPS29-202ENST00000447578 SDR42E2A6NKP2 422 aa3.91□□□□□ -1.78
VPS29-202ENST00000447578 SELENOFO60613 162 aa3.91□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 107.6 ms