RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 REEP5Q00765 189 aa8.08□□□□□ -1.12
USP54-203ENST00000418501 RPE65Q16518 533 aa8.08□□□□□ -1.12
USP54-203ENST00000418501 LCN8Q6JVE9 175 aa8.08□□□□□ -1.12
USP54-203ENST00000418501 ADHFE1Q8IWW8 467 aa8.08□□□□□ -1.12
USP54-203ENST00000418501 FLCNQ8NFG4 579 aa8.08□□□□□ -1.12
USP54-203ENST00000418501 NEIL2Q969S2 332 aa8.08□□□□□ -1.12
USP54-203ENST00000418501 ZBED6CLQ96FA7 236 aaPredicted RBP8.08□□□□□ -1.12
USP54-203ENST00000418501 TOE1Q96GM8 510 aaKnown RBP8.08□□□□□ -1.12
USP54-203ENST00000418501 BBS4Q96RK4 519 aa8.08□□□□□ -1.12
USP54-203ENST00000418501 SPATA5L1Q9BVQ7 753 aa8.08□□□□□ -1.12
USP54-203ENST00000418501 MBNL1Q9NR56 388 aaKnown RBP8.08□□□□□ -1.12
USP54-203ENST00000418501 PHF11Q9UIL8 331 aa8.08□□□□□ -1.12
USP54-203ENST00000418501 A8MUI8 341 aa8.08□□□□□ -1.12
USP54-203ENST00000418501 F3P13726 295 aa8.08□□□□□ -1.12
USP54-203ENST00000418501 GPC1P35052 558 aa8.08□□□□□ -1.12
USP54-203ENST00000418501 SOAT1P35610 550 aa8.08□□□□□ -1.12
USP54-203ENST00000418501 TAS2R38P59533 333 aa8.08□□□□□ -1.12
USP54-203ENST00000418501 PRDX1Q06830 199 aaKnown RBP8.08□□□□□ -1.12
USP54-203ENST00000418501 KLC1Q07866 573 aa8.08□□□□□ -1.12
USP54-203ENST00000418501 EIF2B5Q13144 721 aaKnown RBP8.08□□□□□ -1.12
USP54-203ENST00000418501 SLC9A5Q14940 896 aa8.08□□□□□ -1.12
USP54-203ENST00000418501 LARP7Q4G0J3 582 aaKnown RBP eCLIP8.08□□□□□ -1.12
USP54-203ENST00000418501 GLYATQ6IB77 296 aa8.08□□□□□ -1.12
USP54-203ENST00000418501 Q6ZSR6 202 aa8.08□□□□□ -1.12
USP54-203ENST00000418501 RABEPKQ7Z6M1 372 aa8.08□□□□□ -1.12
USP54-203ENST00000418501 PARGQ86W56 976 aa8.08□□□□□ -1.12
USP54-203ENST00000418501 KIAA2013Q8IYS2 634 aa8.08□□□□□ -1.12
USP54-203ENST00000418501 ST13P4Q8IZP2 240 aaPredicted RBP8.08□□□□□ -1.12
USP54-203ENST00000418501 SPEM1Q8N4L4 309 aa8.08□□□□□ -1.12
USP54-203ENST00000418501 CADM4Q8NFZ8 388 aa8.08□□□□□ -1.12
USP54-203ENST00000418501 OR4A15Q8NGL6 344 aa8.08□□□□□ -1.12
USP54-203ENST00000418501 PROKR1Q8TCW9 393 aa8.08□□□□□ -1.12
USP54-203ENST00000418501 PYDC1Q8WXC3 89 aa8.08□□□□□ -1.12
USP54-203ENST00000418501 FAM131CQ96AQ9 280 aa8.08□□□□□ -1.12
USP54-203ENST00000418501 GPR174Q9BXC1 333 aa8.08□□□□□ -1.12
USP54-203ENST00000418501 EBF2Q9HAK2 575 aa8.08□□□□□ -1.12
USP54-203ENST00000418501 CD248Q9HCU0 757 aa8.08□□□□□ -1.12
USP54-203ENST00000418501 VCX3AQ9NNX9 186 aa8.08□□□□□ -1.12
USP54-203ENST00000418501 ENOPH1Q9UHY7 261 aa8.08□□□□□ -1.12
USP54-203ENST00000418501 ZFR2Q9UPR6 939 aaKnown RBP8.08□□□□□ -1.12
USP54-203ENST00000418501 FAM170BA6NMN3 283 aa8.08□□□□□ -1.12
USP54-203ENST00000418501 SCAMP2O15127 329 aaKnown RBP8.08□□□□□ -1.12
USP54-203ENST00000418501 SPINT1O43278 529 aa8.08□□□□□ -1.12
USP54-203ENST00000418501 E2F6O75461 281 aa8.08□□□□□ -1.12
USP54-203ENST00000418501 SOD1P00441 154 aa8.08□□□□□ -1.12
USP54-203ENST00000418501 CEACAM5P06731 702 aa8.08□□□□□ -1.12
USP54-203ENST00000418501 NPPBP16860 134 aa8.08□□□□□ -1.12
USP54-203ENST00000418501 CAPN3P20807 821 aa8.08□□□□□ -1.12
USP54-203ENST00000418501 BUD31P41223 144 aaPredicted RBP8.08□□□□□ -1.12
USP54-203ENST00000418501 NEK2P51955 445 aa8.08□□□□□ -1.12
USP54-203ENST00000418501 C21orf58P58505 322 aa8.08□□□□□ -1.12
USP54-203ENST00000418501 RBBP4Q09028 425 aa8.08□□□□□ -1.12
USP54-203ENST00000418501 SUZ12Q15022 739 aaKnown RBP8.08□□□□□ -1.12
USP54-203ENST00000418501 ZC3H12BQ5HYM0 836 aaKnown RBP8.08□□□□□ -1.12
USP54-203ENST00000418501 TJAP1Q5JTD0 557 aa8.08□□□□□ -1.12
USP54-203ENST00000418501 TMTC4Q5T4D3 741 aa8.08□□□□□ -1.12
USP54-203ENST00000418501 KHDRBS2Q5VWX1 349 aaKnown RBP8.08□□□□□ -1.12
USP54-203ENST00000418501 KRT80Q6KB66 452 aa8.08□□□□□ -1.12
USP54-203ENST00000418501 ABHD13Q7L211 337 aa8.08□□□□□ -1.12
USP54-203ENST00000418501 RASGRP3Q8IV61 690 aa8.08□□□□□ -1.12
USP54-203ENST00000418501 SLC15A3Q8IY34 581 aa8.08□□□□□ -1.12
USP54-203ENST00000418501 MICU2Q8IYU8 434 aa8.08□□□□□ -1.12
USP54-203ENST00000418501 INSM2Q96T92 566 aaPredicted RBP8.08□□□□□ -1.12
USP54-203ENST00000418501 ACAT2Q9BWD1 397 aa8.08□□□□□ -1.12
USP54-203ENST00000418501 MS4A12Q9NXJ0 267 aa8.08□□□□□ -1.12
USP54-203ENST00000418501 ABCD2Q9UBJ2 740 aa8.08□□□□□ -1.12
USP54-203ENST00000418501 CA14Q9ULX7 337 aa8.08□□□□□ -1.12
USP54-203ENST00000418501 PRKAB1Q9Y478 270 aa8.08□□□□□ -1.12
USP54-203ENST00000418501 DGKBQ9Y6T7 804 aa8.08□□□□□ -1.12
USP54-203ENST00000418501 NDUFS4O43181 175 aa8.08□□□□□ -1.12
USP54-203ENST00000418501 LILRB5O75023 590 aa8.08□□□□□ -1.12
USP54-203ENST00000418501 SOX30O94993 753 aa8.08□□□□□ -1.12
USP54-203ENST00000418501 THEGLP0DJG4 465 aa8.08□□□□□ -1.12
USP54-203ENST00000418501 ITGA2P17301 1181 aa8.08□□□□□ -1.12
USP54-203ENST00000418501 ATP6V1C1P21283 382 aa8.08□□□□□ -1.12
USP54-203ENST00000418501 CD27P26842 260 aa8.08□□□□□ -1.12
USP54-203ENST00000418501 RPL10P27635 214 aaKnown RBP8.08□□□□□ -1.12
USP54-203ENST00000418501 GSK3BP49841 420 aa8.08□□□□□ -1.12
USP54-203ENST00000418501 HNRNPKP61978 463 aaKnown RBP eCLIP8.08□□□□□ -1.12
USP54-203ENST00000418501 SPIDRQ14159 915 aa8.08□□□□□ -1.12
USP54-203ENST00000418501 ADRM1Q16186 407 aa8.08□□□□□ -1.12
USP54-203ENST00000418501 SPANXN4Q5MJ08 99 aa8.08□□□□□ -1.12
USP54-203ENST00000418501 NANOGP8Q6NSW7 305 aa8.08□□□□□ -1.12
USP54-203ENST00000418501 IRGCQ6NXR0 463 aa8.08□□□□□ -1.12
USP54-203ENST00000418501 TLDC1Q6P9B6 456 aa8.08□□□□□ -1.12
USP54-203ENST00000418501 ZNF438Q7Z4V0 828 aa8.08□□□□□ -1.12
USP54-203ENST00000418501 METTL4Q8N3J2 472 aa8.08□□□□□ -1.12
USP54-203ENST00000418501 OR8J2Q8NGG1 315 aa8.08□□□□□ -1.12
USP54-203ENST00000418501 WDR20Q8TBZ3 569 aa8.08□□□□□ -1.12
USP54-203ENST00000418501 WDR60Q8WVS4 1066 aa8.08□□□□□ -1.12
USP54-203ENST00000418501 RASSF5Q8WWW0 418 aa8.08□□□□□ -1.12
USP54-203ENST00000418501 NR1H4Q96RI1 486 aaPredicted RBP8.08□□□□□ -1.12
USP54-203ENST00000418501 RHBGQ9H310 441 aa8.08□□□□□ -1.12
USP54-203ENST00000418501 EPB41L1Q9H4G0 881 aa8.08□□□□□ -1.12
USP54-203ENST00000418501 NANOGQ9H9S0 305 aa8.08□□□□□ -1.12
USP54-203ENST00000418501 PCDH10Q9P2E7 1040 aa8.08□□□□□ -1.12
USP54-203ENST00000418501 CNOT11Q9UKZ1 510 aaKnown RBP8.08□□□□□ -1.12
USP54-203ENST00000418501 MAN2B2Q9Y2E5 1009 aa8.08□□□□□ -1.12
USP54-203ENST00000418501 FAM32AQ9Y421 112 aaKnown RBP8.08□□□□□ -1.12
USP54-203ENST00000418501 GOLGB1Q14789 3259 aaKnown RBP8.07□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms