RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 PTCHD3Q3KNS1 767 aa14.31□□□□□ -0.12
USP4-203ENST00000415188 CYBRD1Q53TN4 286 aa14.31□□□□□ -0.12
USP4-203ENST00000415188 LDLRAP1Q5SW96 308 aa14.31□□□□□ -0.12
USP4-203ENST00000415188 LYSMD4Q5XG99 296 aa14.31□□□□□ -0.12
USP4-203ENST00000415188 RFLNAQ6ZTI6 216 aa14.31□□□□□ -0.12
USP4-203ENST00000415188 MSRB3Q8IXL7 192 aa14.31□□□□□ -0.12
USP4-203ENST00000415188 BEND7Q8N7W2 519 aaPredicted RBP14.31□□□□□ -0.12
USP4-203ENST00000415188 WFIKKN2Q8TEU8 576 aa14.31□□□□□ -0.12
USP4-203ENST00000415188 NMD3Q96D46 503 aaKnown RBP14.31□□□□□ -0.12
USP4-203ENST00000415188 VPS35Q96QK1 796 aa14.31□□□□□ -0.12
USP4-203ENST00000415188 RSL24D1Q9UHA3 163 aaKnown RBP14.31□□□□□ -0.12
USP4-203ENST00000415188 SLCO3A1Q9UIG8 710 aa14.31□□□□□ -0.12
USP4-203ENST00000415188 CYP8B1Q9UNU6 501 aa14.31□□□□□ -0.12
USP4-203ENST00000415188 SLC27A6Q9Y2P4 619 aa14.31□□□□□ -0.12
USP4-203ENST00000415188 STON1Q9Y6Q2 735 aa14.31□□□□□ -0.12
USP4-203ENST00000415188 PLXND1Q9Y4D7 1925 aa14.31□□□□□ -0.12
USP4-203ENST00000415188 EME2A4GXA9 379 aaPredicted RBP14.31□□□□□ -0.12
USP4-203ENST00000415188 CDX4O14627 284 aaPredicted RBP14.31□□□□□ -0.12
USP4-203ENST00000415188 RECQL5O94762 991 aaPredicted RBP14.31□□□□□ -0.12
USP4-203ENST00000415188 KCNK5O95279 499 aa14.31□□□□□ -0.12
USP4-203ENST00000415188 SRPRAP08240 638 aaKnown RBP14.31□□□□□ -0.12
USP4-203ENST00000415188 ETS2P15036 469 aa14.31□□□□□ -0.12
USP4-203ENST00000415188 CDH2P19022 906 aaPredicted RBP14.31□□□□□ -0.12
USP4-203ENST00000415188 IL12RB1P42701 662 aa14.31□□□□□ -0.12
USP4-203ENST00000415188 PNLIPRP1P54315 467 aa14.31□□□□□ -0.12
USP4-203ENST00000415188 ABHD18Q0P651 414 aa14.31□□□□□ -0.12
USP4-203ENST00000415188 ZNF284Q2VY69 593 aa14.31□□□□□ -0.12
USP4-203ENST00000415188 TRIM61Q5EBN2 209 aa14.31□□□□□ -0.12
USP4-203ENST00000415188 HENMT1Q5T8I9 393 aaKnown RBP14.31□□□□□ -0.12
USP4-203ENST00000415188 FRG2Q64ET8 278 aa14.31□□□□□ -0.12
USP4-203ENST00000415188 NRSN1Q8IZ57 195 aa14.31□□□□□ -0.12
USP4-203ENST00000415188 ZNF786Q8N393 782 aa14.31□□□□□ -0.12
USP4-203ENST00000415188 OR10A6Q8NH74 314 aa14.31□□□□□ -0.12
USP4-203ENST00000415188 FRS2Q8WU20 508 aa14.31□□□□□ -0.12
USP4-203ENST00000415188 SKA2Q8WVK7 121 aaPredicted RBP14.31□□□□□ -0.12
USP4-203ENST00000415188 SORCS1Q8WY21 1168 aa14.31□□□□□ -0.12
USP4-203ENST00000415188 ELMO1Q92556 727 aa14.31□□□□□ -0.12
USP4-203ENST00000415188 FIG4Q92562 907 aa14.31□□□□□ -0.12
USP4-203ENST00000415188 GLMNQ92990 594 aa14.31□□□□□ -0.12
USP4-203ENST00000415188 FAM162AQ96A26 154 aa14.31□□□□□ -0.12
USP4-203ENST00000415188 MPP4Q96JB8 637 aa14.31□□□□□ -0.12
USP4-203ENST00000415188 MRGPRX1Q96LB2 322 aa14.31□□□□□ -0.12
USP4-203ENST00000415188 FRG2BQ96QU4 278 aa14.31□□□□□ -0.12
USP4-203ENST00000415188 KAT8Q9H7Z6 458 aaKnown RBP14.31□□□□□ -0.12
USP4-203ENST00000415188 NTN4Q9HB63 628 aa14.31□□□□□ -0.12
USP4-203ENST00000415188 FSCN3Q9NQT6 498 aa14.31□□□□□ -0.12
USP4-203ENST00000415188 SLC25A37Q9NYZ2 338 aa14.31□□□□□ -0.12
USP4-203ENST00000415188 USE1Q9NZ43 259 aa14.31□□□□□ -0.12
USP4-203ENST00000415188 ADGRE2Q9UHX3 823 aa14.31□□□□□ -0.12
USP4-203ENST00000415188 PCDHGA11Q9Y5H2 935 aa14.31□□□□□ -0.12
USP4-203ENST00000415188 CROCCQ5TZA2 2017 aa14.3□□□□□ -0.12
USP4-203ENST00000415188 PSMD11O00231 422 aa14.3□□□□□ -0.12
USP4-203ENST00000415188 UPK1AO00322 258 aa14.3□□□□□ -0.12
USP4-203ENST00000415188 PSIP1O75475 530 aaKnown RBP14.3□□□□□ -0.12
USP4-203ENST00000415188 CATP04040 527 aaKnown RBP14.3□□□□□ -0.12
USP4-203ENST00000415188 TIMP2P16035 220 aa14.3□□□□□ -0.12
USP4-203ENST00000415188 HOXB9P17482 250 aaPredicted RBP14.3□□□□□ -0.12
USP4-203ENST00000415188 AMD1P17707 334 aa14.3□□□□□ -0.12
USP4-203ENST00000415188 PRPS1L1P21108 318 aa14.3□□□□□ -0.12
USP4-203ENST00000415188 XPAP23025 273 aaPredicted RBP14.3□□□□□ -0.12
USP4-203ENST00000415188 MAP4P27816 1152 aaKnown RBP14.3□□□□□ -0.12
USP4-203ENST00000415188 ARSFP54793 590 aa14.3□□□□□ -0.12
USP4-203ENST00000415188 SEMG2Q02383 582 aa14.3□□□□□ -0.12
USP4-203ENST00000415188 ZBED5Q49AG3 693 aa14.3□□□□□ -0.12
USP4-203ENST00000415188 ZNF805Q5CZA5 627 aa14.3□□□□□ -0.12
USP4-203ENST00000415188 CCNYL2Q5T2Q4 361 aa14.3□□□□□ -0.12
USP4-203ENST00000415188 TMEM215Q68D42 235 aa14.3□□□□□ -0.12
USP4-203ENST00000415188 NEK5Q6P3R8 708 aa14.3□□□□□ -0.12
USP4-203ENST00000415188 KIAA1324Q6UXG2 1013 aaKnown RBP14.3□□□□□ -0.12
USP4-203ENST00000415188 HSD11B1LQ7Z5J1 315 aa14.3□□□□□ -0.12
USP4-203ENST00000415188 GPR141Q7Z602 305 aa14.3□□□□□ -0.12
USP4-203ENST00000415188 SYT12Q8IV01 421 aa14.3□□□□□ -0.12
USP4-203ENST00000415188 EID3Q8N140 333 aa14.3□□□□□ -0.12
USP4-203ENST00000415188 KRTCAP2Q8N6L1 136 aa14.3□□□□□ -0.12
USP4-203ENST00000415188 MAGEE2Q8TD90 523 aaPredicted RBP14.3□□□□□ -0.12
USP4-203ENST00000415188 BTN2A2Q8WVV5 523 aa14.3□□□□□ -0.12
USP4-203ENST00000415188 TMBIM1Q969X1 311 aa14.3□□□□□ -0.12
USP4-203ENST00000415188 FAM120BQ96EK7 910 aaKnown RBP14.3□□□□□ -0.12
USP4-203ENST00000415188 SLC47A1Q96FL8 570 aa14.3□□□□□ -0.12
USP4-203ENST00000415188 AURKBQ96GD4 344 aaPredicted RBP14.3□□□□□ -0.12
USP4-203ENST00000415188 REXO5Q96IC2 774 aaKnown RBP14.3□□□□□ -0.12
USP4-203ENST00000415188 MRGPRX3Q96LB0 322 aa14.3□□□□□ -0.12
USP4-203ENST00000415188 CCDC138Q96M89 665 aa14.3□□□□□ -0.12
USP4-203ENST00000415188 PIF1Q9H611 641 aa14.3□□□□□ -0.12
USP4-203ENST00000415188 PCDH12Q9NPG4 1184 aa14.3□□□□□ -0.12
USP4-203ENST00000415188 TMEM9BQ9NQ34 198 aa14.3□□□□□ -0.12
USP4-203ENST00000415188 SERHLQ9NQF3 203 aa14.3□□□□□ -0.12
USP4-203ENST00000415188 THAP10Q9P2Z0 257 aaPredicted RBP14.3□□□□□ -0.12
USP4-203ENST00000415188 IL36AQ9UHA7 158 aa14.3□□□□□ -0.12
USP4-203ENST00000415188 ZNHIT2Q9UHR6 403 aa14.3□□□□□ -0.12
USP4-203ENST00000415188 PILRBQ9UKJ0 227 aa14.3□□□□□ -0.12
USP4-203ENST00000415188 TNRC6BQ9UPQ9 1833 aaKnown RBP14.29□□□□□ -0.12
USP4-203ENST00000415188 SGTAO43765 313 aa14.29□□□□□ -0.12
USP4-203ENST00000415188 GNAO1P09471 354 aa14.29□□□□□ -0.12
USP4-203ENST00000415188 THRBP10828 461 aa14.29□□□□□ -0.12
USP4-203ENST00000415188 SDC1P18827 310 aa14.29□□□□□ -0.12
USP4-203ENST00000415188 HNF4AP41235 474 aa14.29□□□□□ -0.12
USP4-203ENST00000415188 GZMMP51124 257 aa14.29□□□□□ -0.12
USP4-203ENST00000415188 SRSF11Q05519 484 aaKnown RBP14.29□□□□□ -0.12
USP4-203ENST00000415188 BIRC2Q13490 618 aa14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms