RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 C3orf30Q96M34 536 aa13.66□□□□□ -0.22
SF3B1-204ENST00000414963 TGM7Q96PF1 710 aa13.66□□□□□ -0.22
SF3B1-204ENST00000414963 MAP3K3Q99759 626 aa13.66□□□□□ -0.22
SF3B1-204ENST00000414963 CCDC28BQ9BUN5 200 aa13.66□□□□□ -0.22
SF3B1-204ENST00000414963 RABEP2Q9H5N1 569 aa13.66□□□□□ -0.22
SF3B1-204ENST00000414963 BTRCQ9Y297 605 aa13.66□□□□□ -0.22
SF3B1-204ENST00000414963 KLHL20Q9Y2M5 609 aa13.66□□□□□ -0.22
SF3B1-204ENST00000414963 AP1M2Q9Y6Q5 423 aa13.66□□□□□ -0.22
SF3B1-204ENST00000414963 RALGAPA1Q6GYQ0 2036 aa13.66□□□□□ -0.22
SF3B1-204ENST00000414963 A0A0G2JND7 137 aa13.65□□□□□ -0.22
SF3B1-204ENST00000414963 SLC9B1P1A6NJY1 282 aa13.65□□□□□ -0.22
SF3B1-204ENST00000414963 NTN3O00634 580 aaPredicted RBP13.65□□□□□ -0.22
SF3B1-204ENST00000414963 RGS14O43566 566 aa13.65□□□□□ -0.22
SF3B1-204ENST00000414963 OR1F1O43749 312 aa13.65□□□□□ -0.22
SF3B1-204ENST00000414963 DIAPH2O60879 1101 aa13.65□□□□□ -0.22
SF3B1-204ENST00000414963 CTSVO60911 334 aa13.65□□□□□ -0.22
SF3B1-204ENST00000414963 SKAP2O75563 359 aaPredicted RBP13.65□□□□□ -0.22
SF3B1-204ENST00000414963 CLEC3AO75596 197 aa13.65□□□□□ -0.22
SF3B1-204ENST00000414963 RPLP0P05388 317 aaKnown RBP13.65□□□□□ -0.22
SF3B1-204ENST00000414963 PRR35P0CG20 571 aa13.65□□□□□ -0.22
SF3B1-204ENST00000414963 HOXB3P14651 431 aaPredicted RBP13.65□□□□□ -0.22
SF3B1-204ENST00000414963 PVRP15151 417 aa13.65□□□□□ -0.22
SF3B1-204ENST00000414963 ST6GAL1P15907 406 aa13.65□□□□□ -0.22
SF3B1-204ENST00000414963 PRPH2P23942 346 aa13.65□□□□□ -0.22
SF3B1-204ENST00000414963 BCL6P41182 706 aa13.65□□□□□ -0.22
SF3B1-204ENST00000414963 GFERP55789 205 aa13.65□□□□□ -0.22
SF3B1-204ENST00000414963 NHLH1Q02575 133 aa13.65□□□□□ -0.22
SF3B1-204ENST00000414963 ILKQ13418 452 aa13.65□□□□□ -0.22
SF3B1-204ENST00000414963 TUBB3Q13509 450 aa13.65□□□□□ -0.22
SF3B1-204ENST00000414963 RBBP5Q15291 538 aaKnown RBP13.65□□□□□ -0.22
SF3B1-204ENST00000414963 SMU1Q2TAY7 513 aa13.65□□□□□ -0.22
SF3B1-204ENST00000414963 SGO1Q5FBB7 561 aa13.65□□□□□ -0.22
SF3B1-204ENST00000414963 METTL21CQ5VZV1 264 aa13.65□□□□□ -0.22
SF3B1-204ENST00000414963 FAM92BQ6ZTR7 304 aa13.65□□□□□ -0.22
SF3B1-204ENST00000414963 LARP4Q71RC2 724 aaKnown RBP eCLIP13.65□□□□□ -0.22
SF3B1-204ENST00000414963 RNF44Q7L0R7 432 aa13.65□□□□□ -0.22
SF3B1-204ENST00000414963 ADCK2Q7Z695 626 aa13.65□□□□□ -0.22
SF3B1-204ENST00000414963 KMT5CQ86Y97 462 aa13.65□□□□□ -0.22
SF3B1-204ENST00000414963 DDIASQ8IXT1 998 aa13.65□□□□□ -0.22
SF3B1-204ENST00000414963 DNAJC22Q8N4W6 341 aa13.65□□□□□ -0.22
SF3B1-204ENST00000414963 C19orf47Q8N9M1 422 aaKnown RBP13.65□□□□□ -0.22
SF3B1-204ENST00000414963 OR4D9Q8NGE8 314 aa13.65□□□□□ -0.22
SF3B1-204ENST00000414963 OR2T11Q8NH01 316 aa13.65□□□□□ -0.22
SF3B1-204ENST00000414963 WDR48Q8TAF3 677 aa13.65□□□□□ -0.22
SF3B1-204ENST00000414963 CREB3L4Q8TEY5 395 aa13.65□□□□□ -0.22
SF3B1-204ENST00000414963 KLHL6Q8WZ60 621 aa13.65□□□□□ -0.22
SF3B1-204ENST00000414963 MTFMTQ96DP5 389 aaKnown RBP13.65□□□□□ -0.22
SF3B1-204ENST00000414963 METTL2AQ96IZ6 378 aaKnown RBP13.65□□□□□ -0.22
SF3B1-204ENST00000414963 OR2A5Q96R48 311 aa13.65□□□□□ -0.22
SF3B1-204ENST00000414963 EBF4Q9BQW3 602 aa13.65□□□□□ -0.22
SF3B1-204ENST00000414963 TMEM120AQ9BXJ8 343 aa13.65□□□□□ -0.22
SF3B1-204ENST00000414963 ACPTQ9BZG2 426 aa13.65□□□□□ -0.22
SF3B1-204ENST00000414963 DMRT3Q9NQL9 472 aa13.65□□□□□ -0.22
SF3B1-204ENST00000414963 RIC8BQ9NVN3 520 aa13.65□□□□□ -0.22
SF3B1-204ENST00000414963 ZFP69BQ9UJL9 534 aa13.65□□□□□ -0.22
SF3B1-204ENST00000414963 ARL2BPQ9Y2Y0 163 aa13.65□□□□□ -0.22
SF3B1-204ENST00000414963 PCDHGA4Q9Y5G9 962 aa13.65□□□□□ -0.22
SF3B1-204ENST00000414963 EP300Q09472 2414 aaPredicted RBP13.65□□□□□ -0.22
SF3B1-204ENST00000414963 MYO15AQ9UKN7 3530 aa13.65□□□□□ -0.22
SF3B1-204ENST00000414963 IGHV5-51A0A0C4DH38 117 aa13.64□□□□□ -0.23
SF3B1-204ENST00000414963 FEZF1A0PJY2 475 aa13.64□□□□□ -0.23
SF3B1-204ENST00000414963 ANKDD1BA6NHY2 528 aa13.64□□□□□ -0.23
SF3B1-204ENST00000414963 KIF1CO43896 1103 aaKnown RBP13.64□□□□□ -0.23
SF3B1-204ENST00000414963 GDF9O60383 454 aa13.64□□□□□ -0.23
SF3B1-204ENST00000414963 NRP2O60462 931 aa13.64□□□□□ -0.23
SF3B1-204ENST00000414963 RSL1D1O76021 490 aaKnown RBP13.64□□□□□ -0.23
SF3B1-204ENST00000414963 ZBTB11O95625 1053 aaPredicted RBP13.64□□□□□ -0.23
SF3B1-204ENST00000414963 ANKRD34CP0C6C1 535 aa13.64□□□□□ -0.23
SF3B1-204ENST00000414963 PCNAP12004 261 aa13.64□□□□□ -0.23
SF3B1-204ENST00000414963 PTX3P26022 381 aaPredicted RBP13.64□□□□□ -0.23
SF3B1-204ENST00000414963 EPHA3P29320 983 aa13.64□□□□□ -0.23
SF3B1-204ENST00000414963 ACADVLP49748 655 aa13.64□□□□□ -0.23
SF3B1-204ENST00000414963 PHEXP78562 749 aa13.64□□□□□ -0.23
SF3B1-204ENST00000414963 GABPB1Q06547 395 aaPredicted RBP13.64□□□□□ -0.23
SF3B1-204ENST00000414963 CUL3Q13618 768 aa13.64□□□□□ -0.23
SF3B1-204ENST00000414963 TERF2Q15554 542 aa13.64□□□□□ -0.23
SF3B1-204ENST00000414963 CACHD1Q5VU97 1274 aa13.64□□□□□ -0.23
SF3B1-204ENST00000414963 ADNP2Q6IQ32 1131 aa13.64□□□□□ -0.23
SF3B1-204ENST00000414963 SCIMPQ6UWF3 145 aa13.64□□□□□ -0.23
SF3B1-204ENST00000414963 ZNF574Q6ZN55 896 aaPredicted RBP13.64□□□□□ -0.23
SF3B1-204ENST00000414963 ACAD11Q709F0 780 aa13.64□□□□□ -0.23
SF3B1-204ENST00000414963 ASCL5Q7RTU5 278 aa13.64□□□□□ -0.23
SF3B1-204ENST00000414963 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP13.64□□□□□ -0.23
SF3B1-204ENST00000414963 TRPV3Q8NET8 790 aa13.64□□□□□ -0.23
SF3B1-204ENST00000414963 CEP70Q8NHQ1 597 aa13.64□□□□□ -0.23
SF3B1-204ENST00000414963 TM4SF19Q96DZ7 209 aa13.64□□□□□ -0.23
SF3B1-204ENST00000414963 PPP3R2Q96LZ3 170 aa13.64□□□□□ -0.23
SF3B1-204ENST00000414963 OR52B2Q96RD2 323 aa13.64□□□□□ -0.23
SF3B1-204ENST00000414963 MTERF1Q99551 399 aaKnown RBP13.64□□□□□ -0.23
SF3B1-204ENST00000414963 ZFYVE21Q9BQ24 234 aa13.64□□□□□ -0.23
SF3B1-204ENST00000414963 NUDT22Q9BRQ3 303 aa13.64□□□□□ -0.23
SF3B1-204ENST00000414963 WDR55Q9H6Y2 383 aaPredicted RBP13.64□□□□□ -0.23
SF3B1-204ENST00000414963 AKTIPQ9H8T0 292 aa13.64□□□□□ -0.23
SF3B1-204ENST00000414963 TCF7L2Q9NQB0 619 aa13.64□□□□□ -0.23
SF3B1-204ENST00000414963 ENAMQ9NRM1 1142 aa13.64□□□□□ -0.23
SF3B1-204ENST00000414963 NMRK1Q9NWW6 199 aa13.64□□□□□ -0.23
SF3B1-204ENST00000414963 PTGDR2Q9Y5Y4 395 aa13.64□□□□□ -0.23
SF3B1-204ENST00000414963 ZFHX2Q9C0A1 2572 aaPredicted RBP13.64□□□□□ -0.23
SF3B1-204ENST00000414963 DNAH14Q0VDD8 3507 aa13.64□□□□□ -0.23
SF3B1-204ENST00000414963 MAGEB17A8MXT2 336 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms