RNA–Protein interactions for RNA: ENST00000398729.1

VCX3A-202, Transcript of variable charge X-linked 3A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VCX3A, Length 808 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3A-202ENST00000398729 SGPP1Q9BX95 441 aa12.74□□□□□ -0.37
VCX3A-202ENST00000398729 LHPPQ9H008 270 aa12.74□□□□□ -0.37
VCX3A-202ENST00000398729 MKKSQ9NPJ1 570 aaPredicted RBP12.74□□□□□ -0.37
VCX3A-202ENST00000398729 C14orf105Q9NVL8 296 aa12.74□□□□□ -0.37
VCX3A-202ENST00000398729 ARL15Q9NXU5 204 aa12.74□□□□□ -0.37
VCX3A-202ENST00000398729 MAP10Q9P2G4 905 aa12.74□□□□□ -0.37
VCX3A-202ENST00000398729 SNX24Q9Y343 169 aa12.74□□□□□ -0.37
VCX3A-202ENST00000398729 SETD2Q9BYW2 2564 aaPredicted RBP12.74□□□□□ -0.37
VCX3A-202ENST00000398729 KCNE1BA0A087WTH5 132 aa12.73□□□□□ -0.37
VCX3A-202ENST00000398729 IDSB3KWA1 339 aa12.73□□□□□ -0.37
VCX3A-202ENST00000398729 E7ESA3 106 aa12.73□□□□□ -0.37
VCX3A-202ENST00000398729 FFAR3O14843 346 aa12.73□□□□□ -0.37
VCX3A-202ENST00000398729 FANCGO15287 622 aa12.73□□□□□ -0.37
VCX3A-202ENST00000398729 TP73O15350 636 aa12.73□□□□□ -0.37
VCX3A-202ENST00000398729 GPR42O15529 346 aa12.73□□□□□ -0.37
VCX3A-202ENST00000398729 CXCR2P25025 360 aa12.73□□□□□ -0.37
VCX3A-202ENST00000398729 GRK3P35626 688 aa12.73□□□□□ -0.37
VCX3A-202ENST00000398729 RPL21P46778 160 aaKnown RBP12.73□□□□□ -0.37
VCX3A-202ENST00000398729 AVPR1BP47901 424 aa12.73□□□□□ -0.37
VCX3A-202ENST00000398729 CSNK1G2P78368 415 aa12.73□□□□□ -0.37
VCX3A-202ENST00000398729 MRPL49Q13405 166 aaKnown RBP12.73□□□□□ -0.37
VCX3A-202ENST00000398729 FASTKD3Q14CZ7 662 aaKnown RBP12.73□□□□□ -0.37
VCX3A-202ENST00000398729 PLEKHN1Q494U1 663 aaPredicted RBP12.73□□□□□ -0.37
VCX3A-202ENST00000398729 PRR30Q53SZ7 412 aaPredicted RBP12.73□□□□□ -0.37
VCX3A-202ENST00000398729 ATG9BQ674R7 924 aa12.73□□□□□ -0.37
VCX3A-202ENST00000398729 DUPD1Q68J44 220 aa12.73□□□□□ -0.37
VCX3A-202ENST00000398729 LAPTM4BQ86VI4 370 aa12.73□□□□□ -0.37
VCX3A-202ENST00000398729 SLC26A11Q86WA9 606 aa12.73□□□□□ -0.37
VCX3A-202ENST00000398729 IQCKQ8N0W5 287 aa12.73□□□□□ -0.37
VCX3A-202ENST00000398729 CAMKVQ8NCB2 501 aa12.73□□□□□ -0.37
VCX3A-202ENST00000398729 ATL1Q8WXF7 558 aa12.73□□□□□ -0.37
VCX3A-202ENST00000398729 PDLIM5Q96HC4 596 aaKnown RBP12.73□□□□□ -0.37
VCX3A-202ENST00000398729 OLFM1Q99784 485 aa12.73□□□□□ -0.37
VCX3A-202ENST00000398729 HAUS8Q9BT25 410 aa12.73□□□□□ -0.37
VCX3A-202ENST00000398729 SLC29A3Q9BZD2 475 aa12.73□□□□□ -0.37
VCX3A-202ENST00000398729 TGIF2Q9GZN2 237 aa12.73□□□□□ -0.37
VCX3A-202ENST00000398729 ILKAPQ9H0C8 392 aaPredicted RBP12.73□□□□□ -0.37
VCX3A-202ENST00000398729 NSMCE4AQ9NXX6 385 aa12.73□□□□□ -0.37
VCX3A-202ENST00000398729 NSG1A0A0A6YYJ2 146 aa12.72□□□□□ -0.37
VCX3A-202ENST00000398729 FAM187AA6NFU0 413 aa12.72□□□□□ -0.37
VCX3A-202ENST00000398729 H0YIG0 161 aa12.72□□□□□ -0.37
VCX3A-202ENST00000398729 PCDH17O14917 1159 aa12.72□□□□□ -0.37
VCX3A-202ENST00000398729 DDAH2O95865 285 aa12.72□□□□□ -0.37
VCX3A-202ENST00000398729 STATHP02808 62 aa12.72□□□□□ -0.37
VCX3A-202ENST00000398729 HEXBP07686 556 aa12.72□□□□□ -0.37
VCX3A-202ENST00000398729 ENO2P09104 434 aaPredicted RBP12.72□□□□□ -0.37
VCX3A-202ENST00000398729 CDH1P12830 882 aa12.72□□□□□ -0.37
VCX3A-202ENST00000398729 NPPBP16860 134 aa12.72□□□□□ -0.37
VCX3A-202ENST00000398729 ZNF37AP17032 561 aaPredicted RBP12.72□□□□□ -0.37
VCX3A-202ENST00000398729 SAT1P21673 171 aa12.72□□□□□ -0.37
VCX3A-202ENST00000398729 PGGT1BP53609 377 aa12.72□□□□□ -0.37
VCX3A-202ENST00000398729 CALCOCO2Q13137 446 aa12.72□□□□□ -0.37
VCX3A-202ENST00000398729 CBLBQ13191 982 aa12.72□□□□□ -0.37
VCX3A-202ENST00000398729 MAATS1Q7Z4T9 603 aa12.72□□□□□ -0.37
VCX3A-202ENST00000398729 VN1R4Q7Z5H5 301 aa12.72□□□□□ -0.37
VCX3A-202ENST00000398729 STRA8Q7Z7C7 330 aa12.72□□□□□ -0.37
VCX3A-202ENST00000398729 ZC3HC1Q86WB0 502 aaKnown RBP12.72□□□□□ -0.37
VCX3A-202ENST00000398729 ZBED8Q8IZ13 594 aa12.72□□□□□ -0.37
VCX3A-202ENST00000398729 SPATA4Q8NEY3 305 aa12.72□□□□□ -0.37
VCX3A-202ENST00000398729 OR56A3Q8NH54 315 aa12.72□□□□□ -0.37
VCX3A-202ENST00000398729 PYCR2Q96C36 320 aa12.72□□□□□ -0.37
VCX3A-202ENST00000398729 C8orf44Q96CB5 159 aa12.72□□□□□ -0.37
VCX3A-202ENST00000398729 THOC3Q96J01 351 aaKnown RBP12.72□□□□□ -0.37
VCX3A-202ENST00000398729 WDR77Q9BQA1 342 aaPredicted RBP12.72□□□□□ -0.37
VCX3A-202ENST00000398729 FAM129AQ9BZQ8 928 aa12.72□□□□□ -0.37
VCX3A-202ENST00000398729 EPS8L2Q9H6S3 715 aa12.72□□□□□ -0.37
VCX3A-202ENST00000398729 ZBTB20Q9HC78 741 aaPredicted RBP12.72□□□□□ -0.37
VCX3A-202ENST00000398729 ZNF160Q9HCG1 818 aa12.72□□□□□ -0.37
VCX3A-202ENST00000398729 MOCS1Q9NZB8 636 aa12.72□□□□□ -0.37
VCX3A-202ENST00000398729 SH2B3Q9UQQ2 575 aa12.72□□□□□ -0.37
VCX3A-202ENST00000398729 PSAT1Q9Y617 370 aa12.72□□□□□ -0.37
VCX3A-202ENST00000398729 ZFHX3Q15911 3703 aa12.72□□□□□ -0.37
VCX3A-202ENST00000398729 DOCK10Q96BY6 2186 aa12.71□□□□□ -0.37
VCX3A-202ENST00000398729 C2CD3Q4AC94 2353 aa12.71□□□□□ -0.37
VCX3A-202ENST00000398729 FAM95CA0A1B0GW59 222 aa12.71□□□□□ -0.37
VCX3A-202ENST00000398729 FEZF1A0PJY2 475 aa12.71□□□□□ -0.37
VCX3A-202ENST00000398729 NSA2O95478 260 aaKnown RBP12.71□□□□□ -0.37
VCX3A-202ENST00000398729 GUCA1CO95843 209 aa12.71□□□□□ -0.37
VCX3A-202ENST00000398729 CASQ1P31415 396 aa12.71□□□□□ -0.37
VCX3A-202ENST00000398729 BCL6P41182 706 aa12.71□□□□□ -0.37
VCX3A-202ENST00000398729 CCR8P51685 355 aa12.71□□□□□ -0.37
VCX3A-202ENST00000398729 MRPS25P82663 173 aaKnown RBP12.71□□□□□ -0.37
VCX3A-202ENST00000398729 MAT1AQ00266 395 aaKnown RBP12.71□□□□□ -0.37
VCX3A-202ENST00000398729 Q0VFX4 171 aa12.71□□□□□ -0.37
VCX3A-202ENST00000398729 ILF2Q12905 390 aaKnown RBP12.71□□□□□ -0.37
VCX3A-202ENST00000398729 SYT16Q17RD7 645 aa12.71□□□□□ -0.37
VCX3A-202ENST00000398729 TMEM214Q6NUQ4 689 aaKnown RBP12.71□□□□□ -0.37
VCX3A-202ENST00000398729 Q6ZS92 163 aa12.71□□□□□ -0.37
VCX3A-202ENST00000398729 NDUFAF7Q7L592 441 aa12.71□□□□□ -0.37
VCX3A-202ENST00000398729 MAMDC2Q7Z304 686 aaPredicted RBP12.71□□□□□ -0.37
VCX3A-202ENST00000398729 ASPGQ86U10 573 aa12.71□□□□□ -0.37
VCX3A-202ENST00000398729 ZC3H7AQ8IWR0 971 aaKnown RBP12.71□□□□□ -0.37
VCX3A-202ENST00000398729 NKAPQ8N5F7 415 aaKnown RBP12.71□□□□□ -0.37
VCX3A-202ENST00000398729 TBC1D19Q8N5T2 526 aa12.71□□□□□ -0.37
VCX3A-202ENST00000398729 OR9A4Q8NGU2 314 aa12.71□□□□□ -0.37
VCX3A-202ENST00000398729 PPP4R1Q8TF05 950 aa12.71□□□□□ -0.37
VCX3A-202ENST00000398729 PYROXD1Q8WU10 500 aa12.71□□□□□ -0.37
VCX3A-202ENST00000398729 ANKRD7Q92527 254 aa12.71□□□□□ -0.37
VCX3A-202ENST00000398729 FBXL8Q96CD0 374 aa12.71□□□□□ -0.37
VCX3A-202ENST00000398729 SNRNP40Q96DI7 357 aaKnown RBP12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms